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* gnu: scotch: Explicitly pass "-DINTSIZE" to CMake.Ludovic Courtès2022-03-07
| | | | | | | | | | | Previously, the 'scotch' and 'pt-scotch' packages would use the default int size, which turned out to be 32 on x86_64-linux instead of 64 as it used to be in Scotch 6.x. * gnu/packages/maths.scm (scotch)[arguments]: Add "-DINTSIZE" to #:configure-flags. (scotch32)[arguments]: Likewise. (pt-scotch)[arguments]: Likewise. (pt-scotch32)[arguments]: Likewise.
* gnu: hypre: Remove input labels.Ludovic Courtès2022-03-02
| | | | | * gnu/packages/maths.scm (hypre)[native-inputs, inputs]: Remove labels. (hypre-openmpi)[inputs]: Use 'modify-inputs'.
* gnu: texlive-latex-wrapfig: Rename to "texlive-wrapfig".Ludovic Courtès2022-03-02
| | | | | | | | | * gnu/packages/tex.scm (texlive-latex-wrapfig): Rename to... (texlive-wrapfig): ... this. (texlive-latex-wrapfig): Define as deprecated. * gnu/packages/maths.scm (hypre)[native-inputs]: Use new name. * gnu/packages/python-xyz.scm (python-ipython-documentation) (python-numpy-documentation): Likewise.
* gnu: why3: Update to 1.4.1.Julien Lepiller2022-03-02
| | | | * gnu/packages/maths.scm (why3): Update to 1.4.1.
* gnu: Remove unneeded uses of 'libiconv'.Marius Bakke2022-02-15
| | | | | | | | | | | | | | | | | iconv is part of glibc, there is no need to add it as input. * gnu/packages/accessibility.scm (brltty)[inputs]: Remove LIBICONV. * gnu/packages/compression.scm (innoextract)[inputs]: Likewise. * gnu/packages/haskell-apps.scm (darcs)[inputs]: Likewise. * gnu/packages/kde-multimedia.scm (k3b)[inputs]: Likewise. * gnu/packages/linphone.scm (liblinphone)[inputs]: Likewise. * gnu/packages/mail.scm (mailutils)[inputs]: Likewise. * gnu/packages/maths.scm (libqalculate)[inputs]: Likewise. * gnu/packages/pep.scm (pep-engine)[inputs]: Likewise. * gnu/packages/vim.scm (neovim)[inputs]: Likewise. * gnu/packages/wget.scm (wget2)[inputs]: Likewise. * gnu/packages/telegram.scm (telegram-desktop)[inputs]: Likewise. * gnu/packages/video.scm (transcode)[native-inputs]: Likewise.
* gnu: mumps: Remove input labels.Ludovic Courtès2022-02-15
| | | | | | | * gnu/packages/maths.scm (mumps)[inputs]: Remove labels. [arguments]: Adjust 'configure' phase to not rely on the "mpi" and "blas" labels. (mumps-metis, mumps-openmpi, mumps-metis-openmpi): Use 'modify-inputs'.
* gnu: scotch: Update to 7.0.1.Ludovic Courtès2022-02-15
| | | | | | | | | | | | | | * gnu/packages/maths.scm (scotch): Update to 7.0.1. [source]: Switch to 'git-fetch'. [build-system]: Switch to CMAKE-BUILD-SYSTEM. [arguments]: Add #:configure-flags. Remove #:make-flags. Remove 'chdir-to-src', 'configure', and 'build-esmumps' phases. [properties]: Update 'release-monitoring-url' property. (scotch32, pt-scotch, pt-scotch32): Update accordingly, replacing now useless build phases with #:configure-flags. (scotch-shared, pt-scotch-shared): Mark as deprecated. (mumps)[arguments]: In 'configure' phase, use '-lesmumps' unconditionally, since that's now how pt-scotch calls it.
* gnu: opencascade-occt: Update to 7.6.0.Petr Hodina2022-02-11
| | | | | | | * gnu/packages/maths.scm (opencascade-occt): Update to 7.6.0. [native-inputs]: Add fontconfig. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
* gnu: superlu: Update to 5.3.0.Eric Bavier2022-02-05
| | | | | * gnu/packages/maths.scm (superlu): Update to 5.3.0. [source]: Adjust to new url.
* gnu: openblas: Fix building on riscv64-linux.Efraim Flashner2022-02-01
| | | | | | * gnu/packages/maths.scm (openblas)[arguments]: Adjust make-flags on riscv64-linux to target the correct architecture when building for riscv64-linux.
* gnu: Properly deprecate texlive-generic-ulem.Nicolas Goaziou2022-01-28
| | | | | | | * gnu/packages/python-xyz.scm (python-nbconvert): * gnu/packages/maths.scm (hypre): Apply deprecation. * gnu/packages/tex.scm (texlive-generic-ulem): Fix typo in deprecation command.
* gnu: Remove occurrences of deprecated texlive-latex-capt-of.Nicolas Goaziou2022-01-28
| | | | | | * gnu/packages/maths.scm (hypre): * gnu/packages/python-xyz.scm (python-numpy-documentation): (python-ipython-documentation): Use texlive-capt-of instead of texlive-latex-capt-of.
* gnu: jacal: Update to 1c7.Morgan Smith2022-01-22
| | | | | | | | | * gnu/packages/patches/jacal-fix-texinfo.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Delete this. * gnu/packages/maths.scm (jacal)[source]: Delete this patch. [version]: Update to 1c7. Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
* gnu: dune-pdelab: Update to 2.7.1.Felix Gruber2022-01-20
| | | | | | | * gnu/packages/maths.scm (dune-pdelab): Update to 2.7.1. [version]: Use `git-version` to compute the version string. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: dune-functions: Update to 2.7.1.Felix Gruber2022-01-20
| | | | | | | * gnu/packages/maths.scm (dune-functions): Update to 2.7.1. [arguments]: Parallelize build-tests phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: dune-typetree: Update to 2.7.1.Felix Gruber2022-01-20
| | | | | | | * gnu/packages/maths.scm (dune-typetree): Update to 2.7.1. [arguments]: Parallelize build-tests phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: dune-subgrid: Update to 2.7.1.Felix Gruber2022-01-20
| | | | | | | | * gnu/packages/maths.scm (dune-subgrid): Update to 2.7.1. [version]: Use `git-version` to compute the version string. [arguments]: Parallelize build-tests phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: dune-alugrid: Update to 2.7.1.Felix Gruber2022-01-20
| | | | | | | | * gnu/packages/maths.scm (dune-alugrid): Update to 2.7.1. [version]: Use `git-version` to compute the version string. [arguments]: Parallelize build-tests phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: dune-localfunctions: Update to 2.7.1.Felix Gruber2022-01-20
| | | | | | | * gnu/packages/maths.scm (dune-localfunctions): Update to 2.7.1. [arguments]: Parallelize build-tests phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: dune-istl: Update to 2.7.1.Felix Gruber2022-01-20
| | | | | | | | | | * gnu/packages/maths.scm (dune-istl): Update to 2.7.1. [arguments]: Parallelize build-tests phase. [source](patches) Remove patch that is no longer needed. * gnu/packages/patches/dune-istl-2.7-fix-non-mpi-tests.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove above patch. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: dune-grid: Update to 2.7.1.Felix Gruber2022-01-20
| | | | | | | * gnu/packages/maths.scm (dune-grid): Update to 2.7.1. [arguments]: Parallelize build-tests phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: dune-uggrid: Update to 2.7.1.Felix Gruber2022-01-20
| | | | | | | * gnu/packages/maths.scm (dune-uggrid): Update to 2.7.1. [arguments]: Parallelize build-tests phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: dune-geometry: Update to 2.7.1.Felix Gruber2022-01-20
| | | | | | | * gnu/packages/maths.scm (dune-geometry): Update to 2.7.1. [arguments]: Parallelize build-tests phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: dune-common: Update to 2.7.1.Felix Gruber2022-01-20
| | | | | | | * gnu/packages/maths.scm (dune-common): Update to 2.7.1. [arguments]: Parallelize build-tests phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Modernize add-openmpi-to-dune-packageFelix Gruber2022-01-20
| | | | | | | * gnu/packages/maths.scm (add-openmpi-to-dune-package): Use modify-inputs. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Remove python2-cvxopt.Felix Gruber2022-01-12
| | | | | | * gnu/packages/maths.scm (python2-cvxopt): Remove variable. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: python-cvxopt: Update to 1.2.7.Felix Gruber2022-01-12
| | | | | | * gnu/packages/maths.scm (python-cvxopt): Update to 1.2.7. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: ceres: Update to 2.0.0.Felix Gruber2022-01-11
| | | | | | | | | * gnu/packages/maths.scm (ceres): Update to 2.0.0. [inputs]: Use simplified format. (ceres-solver-benchmarks)[phases]: Add schur_eliminator_benchmark. Replace autodiff_cost_function_benchmark with new autodiff_benchmarks. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: dealii: Update to 9.3.2.Felix Gruber2022-01-11
| | | | | | | | | | | | | | * gnu/packages/maths.scm (dealii): Update to 9.3.2. [source]: Add dealii-fix-compiliation-with-boost-1.78.patch and dealii-fix-sundials.patch. [inputs]: Use simplified format. [native-inputs]: Use simplified format. * gnu/packages/patches/dealii-fix-compiliation-with-boost-1.78.patch: New file. * gnu/packages/patches/dealii-fix-sundials.patch: New file. * gnu/local.mk: Add new patch files. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
* gnu: gsl: Add 'tunable?' property.Ludovic Courtès2022-01-01
| | | | * gnu/packages/maths.scm (gsl)[properties]: New field.
* gnu: Add ceres-solver-benchmarks.Ludovic Courtès2022-01-01
| | | | * gnu/packages/maths.scm (ceres-solver-benchmarks): New variable.
* gnu: ceres-solver: Mark as tunable.Ludovic Courtès2022-01-01
| | | | * gnu/packages/maths.scm (ceres)[properties]: New field.
* gnu: Capitalize beginning of synopsis.Vagrant Cascadian2021-12-30
| | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/admin.scm (hungrycat)[synopsis]: Captalize. * gnu/packages/cobol.scm (gnucobol)[synopsis]: Likewise. * gnu/packages/cpp.scm (clipper)[synopsis]: Likewise. * gnu/packages/crates-graphics.scm (rust-piston-texture-0.8)[synopsis]: Likewise. * gnu/packages/crates-io.scm (rust-alloc-stdlib-0.2, rust-atom-0.3, rust-oorandom-11.1, rust-r2d2, rust-scheduled-thread-pool-0.2, rust-takeable-option-0.4, rust-ttf-parser-0.12)[synopsis]: Likewise. * gnu/packages/games.scm (roguebox-adventures)[synopsis]: Likewise. * gnu/packages/gl.scm (libepoxy)[synopsis]: Likewise. * gnu/packages/gnome-xyz.scm (arc-theme)[synopsis]: Likewise. * gnu/packages/haskell-xyz.scm (ghc-cborg-json, ghc-rio)[synopsis]: Likewise. * gnu/packages/installers.scm (mingw-path)[synopsis]: Likewise. * gnu/packages/lisp-xyz.scm (sbcl-cl-utilities)[synopsis]: Likewise. * gnu/packages/maths.scm (coda)[synopsis]: Likewise. * gnu/packages/ocaml.scm (ocaml4.07-ppx-sexp-message)[synopsis]: Likewise. * gnu/packages/perl6.scm (perl6-json)[synopsis]: Likewise. * gnu/packages/python-xyz.scm (python-markuppy, python-febelfin-coda)[synopsis]: Likewise. * gnu/packages/statistics.scm (r-magrittr)[synopsis]: Likewise. * gnu/packages/terminals.scm (sakura)[synopsis]: Likewise.
* gnu: Remove leading article from synopsis.Vagrant Cascadian2021-12-30
| | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/admin.scm (hungrycat)[synopsis]: Remove leading article. * gnu/packages/cobol.scm (gnucobol)[synopsis]: Likewise. * gnu/packages/cpp.scm (clipper)[synopsis]: Likewise. * gnu/packages/crates-graphics.scm (rust-piston-texture-0.8)[synopsis]: Likewise. * gnu/packages/crates-io.scm (rust-alloc-stdlib-0.2, rust-atom-0.3, rust-oorandom-11.1, rust-r2d2, rust-scheduled-thread-pool-0.2, rust-takeable-option-0.4, rust-ttf-parser-0.12, rust-svd-parser-0.9)[synopsis]: Likewise. * gnu/packages/games.scm (roguebox-adventures)[synopsis]: Likewise. * gnu/packages/gl.scm (libepoxy)[synopsis]: Likewise. * gnu/packages/gnome-xyz.scm (arc-theme)[synopsis]: Likewise. * gnu/packages/haskell-xyz.scm (ghc-cborg-json, ghc-rio)[synopsis]: Likewise. * gnu/packages/installers.scm (mingw-path)[synopsis]: Likewise. * gnu/packages/lisp-xyz.scm (sbcl-cl-utilities)[synopsis]: Likewise. * gnu/packages/lisp.scm (gcl, clisp)[synopsis]: Likewise. * gnu/packages/maths.scm (coda)[synopsis]: Likewise. * gnu/packages/ocaml.scm (ocaml4.07-ppx-sexp-message)[synopsis]: Likewise. * gnu/packages/perl6.scm (perl6-json)[synopsis]: Likewise. * gnu/packages/python-xyz.scm (python-pari-jupyter, python-markuppy, python-febelfin-coda)[synopsis]: Likewise. * gnu/packages/scheme.scm (mit-scheme)[synopsis]: Likewise. * gnu/packages/statistics.scm (r-magrittr)[synopsis]: Likewise. * gnu/packages/terminals.scm (sakura)[synopsis]: Likewise.
* gnu: Add feedgnuplot.Marius Bakke2021-12-26
| | | | * gnu/packages/maths.scm (feedgnuplot): New public variable.
* gnu: frama-c: Update to 24.0.Julien Lepiller2021-12-22
| | | | * gnu/packages/maths.scm (frama-c): Update to 24.0.
* gnu: cglm: Use meson-build-system.Liliana Marie Prikler2021-12-19
| | | | | | | | The CMake-based builds fail to correctly encode the version, leading to build failures in dependencies. See <https://bugs.gnu.org/52663>. * gnu/packages/maths.scm (cglm)[build-system]: Change to meson-build-system. [arguments]: Adjust #:configure-flags accordingly.
* gnu: cglm: Update to 0.8.4.Liliana Marie Prikler2021-12-19
| | | | * gnu/packages/maths.scm (cglm): Update to 0.8.4.
* gnu: Further simplify package inputs.Ludovic Courtès2021-12-13
| | | | | | | | | This is the result of running: ./pre-inst-env guix style --input-simplification=safe and manually undoing changes on a dozen of packages to reduce rebuilds (derivations for emacs, icecat, and libreoffice are unchanged.)
* gnu: Simplify package inputs.Ludovic Courtès2021-12-13
| | | | | | | | This commit was obtained by running: ./pre-inst-env guix style without any additional argument.
* gnu: sundials: Add 'release-monitoring-url' property.Ludovic Courtès2021-12-12
| | | | * gnu/packages/maths.scm (sundials)[properties]: New field.
* gnu: sundials: Build with '-fcommon'.Ludovic Courtès2021-12-12
| | | | * gnu/packages/maths.scm (sundials)[arguments]: Pass "-DCMAKE_C_FLAGS".
* gnu: Add gsl-static.Efraim Flashner2021-12-09
| | | | * gnu/packages/maths.scm (gsl-static): New variable.
* gnu: python-slepc4py: Update to 3.16.1.Ludovic Courtès2021-12-08
| | | | | | | | This is a followup 5b4d1e57b6d4931f6ee2a50abf84222fe015d045. * gnu/packages/maths.scm (slepc-openmpi)[inputs]: Move ARPACK-NG-OPENMPI to... [propagated-inputs]: ... here. (python-slepc4py): Update to 3.16.1.
* gnu: python-petsc4py: Update to 3.16.1.Ludovic Courtès2021-12-08
| | | | | | This is a followup to 07ac13a26a0d7c8319afb42c55fc2116ec44668f. * gnu/packages/maths.scm (python-petsc4py): Update to 3.16.1.
* gnu: mumps: Allow compilation with GCC 10.Ludovic Courtès2021-12-08
| | | | | | | | Following the suggestion at <https://community.freefem.org/t/compline-on-macos-10-15-6/543>. * gnu/packages/maths.scm (mumps)[arguments]: In 'configure' phase, add '-fallow-argument-mismatch' to 'OPTF'.
* Merge remote-tracking branch 'origin/master' into core-updates-frozenRicardo Wurmus2021-12-05
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| * gnu: ceres-solver: Install library to lib/ instead of lib64/.Ludovic Courtès2021-11-26
| | | | | | | | | | * gnu/packages/maths.scm (ceres)[arguments]: In 'set-library-directory' phase, modify the top-level 'CMakeLists.txt'.
* | gnu: clapack: Pass -fcommon to compiler.Ricardo Wurmus2021-12-05
| | | | | | | | * gnu/packages/maths.scm (clapack)[arguments]: Set CFLAGS.
* | gnu: clapack: Remove trailing #T.Ricardo Wurmus2021-12-05
| | | | | | | | | | * gnu/packages/maths.scm (clapack)[arguments]: Remove trailing #T from build phases.
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