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* gnu: dune-istl: Build with suitesparseFelix Gruber2020-03-12
| | | | | | | * gnu/packages/maths.scm (dune-istl)[inputs]: Add suitesparse to build additional solvers in dune-istl. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add dune-subgridFelix Gruber2020-03-12
| | | | | | * gnu/packages/maths.scm (dune-subgrid): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add dune-uggrid.Felix Gruber2020-03-12
| | | | | | | | | | | * gnu/packages/maths.scm (dune-uggrid): New variable. (dune-grid)[propagated-inputs]: Add dune-uggrid dependency, so that the UGGrid class in dune-grid can be used by packages that have dune-grid as input. (dune-functions)[arguments]: Enable tests that previously weren't built as they require dune-uggrid. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: dune-*: set up MPI for testsFelix Gruber2020-03-12
| | | | | | | | * gnu/packages/maths.scm (dune-common, dune-grid, dune-istl, dune-alugrid): [arguments]: correctly set up MPI instead of disabling tests that require MPI. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: speedcrunch: Use HTTPS home page.Tobias Geerinckx-Rice2020-03-09
| | | | * gnu/packages/maths.scm (speedcrunch)[home-page]: Use HTTPS.
* gnu: openblas: Use HTTPS home page.Tobias Geerinckx-Rice2020-03-07
| | | | * gnu/packages/maths.scm (openblas)[home-page]: Use HTTPS.
* gnu: wxmaxima: Update to 20.02.4.Kei Kebreau2020-03-06
| | | | | | * gnu/packages/maths.scm (wxmaxima): Update to 20.02.4. [arguments]: Enable tests and set #:test-target to "test". [native-inputs]: Add xorg-server-for-tests.
* gnu: SuiteSparse: Update to 5.7.1.Felix Gruber2020-03-04
| | | | | | | | | | | | | | * gnu/packages/maths.scm (suitesparse): Update to 5.7.1. [source]: The latest releases of SuiteSparse have only been published on GitHub. Fetch from git tag as GitHub releases page only contains autogenerated tarballs that guix lint complains about. Apply new patch for Mongoose's CMakeList.txt to find SuiteSparse_config. [arguments]: Add CMake flags used by new components GraphBLAS and Mongoose. [native-inputs]: Add CMake and m4 needed to build GraphBLAS and Mongoose. * gnu/packages/patches/suitesparse-mongoose-cmake.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: z3: Build the Python bindingsJakub Kądziołka2020-02-23
| | | | | | * gnu/packages/maths.scm (z3)[arguments]: Add the --python and --pypkgdir flags to configure. To facilitate the latter, add (guix build python-build-system) to #:modules and #:imported-modules.
* gnu: Add vinci.Andreas Enge2020-02-21
| | | | * gnu/packages/maths.scm (vinci): New variable.
* gnu: octave, octave-cli: Update to 5.2.0.Kei Kebreau2020-02-10
| | | | | * gnu/packages/maths.scm (octave, octave-cli): Update to 5.2.0. [inputs]: Add bdb.
* gnu: superlu-dist: Update to 6.2.0.Eric Bavier2020-01-31
| | | | | | | * gnu/packages/maths.scm (superlu-dist): Update to 6.2.0. [source]: Update upstream url. Remove mpi deprecations patch. * gnu/packages/patches/superlu-dist-fix-mpi-deprecations.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: superlu: Update upstream url.Eric Bavier2020-01-31
| | | | * gnu/packages/maths.scm (superlu)[source,home-page]: Update url.
* gnu: wxmaxima: Update to 20.01.3.Kei Kebreau2020-01-23
| | | | | * gnu/packages/maths.scm (wxmaxima): Update to 20.01.3. [home-page]: Update URL.
* gnu: elemental: Update home page.Tobias Geerinckx-Rice2020-01-19
| | | | | * gnu/packages/maths.scm (elemental)[home-page]: Use repository home page.
* gnu: petsc: Use HTTPS home page.Tobias Geerinckx-Rice2020-01-19
| | | | * gnu/packages/maths.scm (petsc)[home-page, license]: Use HTTPS.
* gnu: Use HTTPS for www.hdfgroup.org.Tobias Geerinckx-Rice2020-01-17
| | | | | * gnu/packages/maths.scm (hdf5)[home-page, license]: Use HTTPS. (hdf-java, h5check)[source]: Likewise.
* gnu: netcdf: Use HTTPS home page.Tobias Geerinckx-Rice2020-01-17
| | | | * gnu/packages/maths.scm (netcdf)[home-page]: Use HTTPS.
* gnu: scotch: Use HTTPS home page.Tobias Geerinckx-Rice2020-01-17
| | | | * gnu/packages/maths.scm (scotch)[home-page]: Use HTTPS.
* Update email address for Amin Bandali.Amin Bandali2020-01-17
| | | | | | | | | * .mailmap: Add name and email addresses for Amin Bandali. * gnu/local.mk, gnu/packages/emacs-xyz.scm, gnu/packages/emacs.scm, gnu/packages/fpga.scm, gnu/packages/lean.scm, gnu/packages/maths.scm: Update email address for Amin Bandali. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
* gnu: python-slepc4py: Update to 3.11.0.Paul Garlick2020-01-14
| | | | * gnu/packages/maths.scm (python-slepc4py): Update to 3.11.0.
* gnu: python-petsc4py: Update to 3.11.0.Paul Garlick2020-01-14
| | | | * gnu/packages/maths.scm (python-petsc4py): Update to 3.11.0.
* gnu: hdf5@1.10: Update to 1.10.6.Tobias Geerinckx-Rice2020-01-10
| | | | * gnu/packages/maths.scm (hdf5-1.10): Update to 1.10.6.
* gnu: lapack: Update to 3.9.0.Konrad Hinsen2020-01-07
| | | | | | * gnu/packages/maths.scm (lapack): Update to 3.9.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: hdf5@1.10: Update to 1.10.5.Ludovic Courtès2019-12-13
| | | | | | | * gnu/packages/maths.scm (hdf5-1.10): Update to 1.10.5. Remove "hdf5-mpi-deprecations.patch". * gnu/packages/patches/hdf5-mpi-deprecations.patch: Remove. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: Add lrslib.Andreas Enge2019-12-06
| | | | * gnu/packages/maths.scm (lrslib): New variable.
* Merge branch 'staging'Marius Bakke2019-12-04
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| * Merge branch 'master' into stagingMarius Bakke2019-11-28
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| * \ Merge branch 'master' into stagingMarius Bakke2019-11-21
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| * \ \ Merge branch 'master' into stagingMarius Bakke2019-10-21
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| * \ \ \ Merge branch 'master' into stagingMarius Bakke2019-10-18
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| * \ \ \ \ Merge branch 'master' into stagingMarius Bakke2019-10-13
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| * | | | | | gnu: OpenBLAS: Update to 0.3.7.Marius Bakke2019-10-08
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (openblas): Update to 0.3.7.
| * | | | | | gnu: OpenBLAS: Incorporate grafted changes.Marius Bakke2019-10-08
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (openblas)[replacement]: Remove. [arguments]: Add NUM_THREADS in #:make-flags. (openblas/fixed-num-threads): Remove variable.
* | | | | | | gnu: z3: Update to 4.8.7.Tobias Geerinckx-Rice2019-12-01
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (z3): Update to 4.8.7.
* | | | | | | gnu: nauty: Update to 2.6r12.Tobias Geerinckx-Rice2019-12-01
| |_|_|_|_|/ |/| | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (nauty): Update to 2.6r12.
* | | | | | gnu: Remove obsolete import of R build system module.Ricardo Wurmus2019-11-27
| | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm: Remove import of (guix build-system r).
* | | | | | gnu: r-subplex: Move to (gnu packages cran).zimoun2019-11-27
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (r-subplex): Move from here... * gnu/packages/cran.scm (r-subplex): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* | | | | | gnu: r-pracma: Move to (gnu packages cran).zimoun2019-11-27
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (r-pracma): Move from here... * gnu/packages/cran.scm (r-pracma): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* | | | | | gnu: r-desolve: Move to (gnu packages cran).zimoun2019-11-27
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (r-desolve): Move from here... * gnu/packages/cran.scm (r-desolve): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* | | | | | gnu: r-quadprog: Move to (gnu packages cran).zimoun2019-11-27
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (r-quadprog): Move from here... * gnu/packages/cran.scm (r-quadprog): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* | | | | | gnu: wxmaxima: Update to 19.11.1.Kei Kebreau2019-11-23
| | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (wxmaxima): Update to 19.11.1.
* | | | | | gnu: r-quadprog: Update to 1.5-8.Tobias Geerinckx-Rice2019-11-23
| | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (r-quadprog): Update to 1.5-8.
* | | | | | gnu: r-desolve: Update to 1.25.Tobias Geerinckx-Rice2019-11-23
| |_|_|_|/ |/| | | | | | | | | | | | | | * gnu/packages/maths.scm (r-desolve): Update to 1.25.
* | | | | gnu: Add minisat.Robert Smith2019-11-19
| |_|_|/ |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/minisat-friend-declaration.patch: New file. * gnu/packages/patches/minisat-install.patch: New file. * gnu/local.mk (dist_patch_DATA): Add both files above. * gnu/packages/maths.scm (minisat): New exported variable. Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
* | | | gnu: vc: Update to 1.4.1.Marius Bakke2019-10-20
| |_|/ |/| | | | | | | | | | | | | | * gnu/packages/maths.scm (vc): Update to 1.4.1. [native-inputs]: Add VIRTEST and a test data origin. [arguments]: Add phase to copy test data.
* | | gnu: mumps: Build and install shared libraries.Maurice Brémond2019-10-14
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/mumps-shared-libseq.patch, gnu/packages/patches/mumps-shared-mumps.patch, gnu/packages/patches/mumps-shared-pord.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/maths.scm (mumps)[source](patches): Add them. [arguments]: In 'configure' phase, adjust "Makefile.inc" for shared library support. In 'install' phase, install libmpiseq.so when it exists. Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
* | | gnu: mumps: Update to 5.2.1.Maurice Brémond2019-10-14
| |/ |/| | | | | | | | | * gnu/packages/maths.scm (mumps): Update to 5.2.1. Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
* | gnu: mcrl2: Update source url.Jan Nieuwenhuizen2019-10-08
|/ | | | * gnu/packages/maths.scm (mcrl2): Update source url.
* Merge branch 'core-updates'Ludovic Courtès2019-10-08
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