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* gnu: Add r-ensdb-hsapiens-v86.Ricardo Wurmus2022-03-10
| | | | * gnu/packages/bioconductor.scm (r-ensdb-hsapiens-v86): New variable.
* gnu: Add r-ensdb-mmusculus-v79.Ricardo Wurmus2022-03-10
| | | | * gnu/packages/bioconductor.scm (r-ensdb-mmusculus-v79): New variable.
* gnu: r-abn: Update to 2.6-0.Ricardo Wurmus2022-01-23
| | | | | * gnu/packages/bioconductor.scm (r-abn): Update to 2.6-0. [propagated-inputs]: Add r-doparallel and r-foreach.
* gnu: r-activepathways: Update to 1.0.4.Ricardo Wurmus2022-01-23
| | | | * gnu/packages/bioconductor.scm (r-activepathways): Update to 1.0.4.
* gnu: r-bigmelon: Add r-knitr.Ricardo Wurmus2022-01-21
| | | | * gnu/packages/bioconductor.scm (r-bigmelon)[native-inputs]: Add r-knitr.
* gnu: Add r-hgu133plus2-db.zimoun2022-01-21
| | | | * gnu/packages/bioconductor.scm (r-hgu133plus2-db): New variable.
* gnu: Add r-jetset.zimoun2022-01-21
| | | | * gnu/packages/bioconductor.scm (r-jetset): New variable.
* gnu: r-org-dr-eg-db: Update to 3.14.0.zimoun2022-01-21
| | | | * gnu/packages/bioconductor.scm (r-org-dr-eg-db): Update to 3.14.0.
* gnu: r-rbowtie: Add missing input.Ricardo Wurmus2022-01-20
| | | | * gnu/packages/bioconductor.scm (r-rbowtie)[inputs]: Add zlib.
* gnu: r-pasilla: Use bioconductor-uri.Ricardo Wurmus2022-01-20
| | | | * gnu/packages/bioconductor.scm (r-pasilla)[source]: Use bioconductor-uri.
* gnu: Add r-transcriptr.Ricardo Wurmus2022-01-11
| | | | * gnu/packages/bioconductor.scm (r-transcriptr): New variable.
* gnu: r-sanssouci: Add source file-name.Efraim Flashner2022-01-07
| | | | | * gnu/packages/bioinformatics.scm (r-sanssourci)[source]: Add file-name field.
* gnu: r-tximeta: Update to 1.12.4.Ricardo Wurmus2022-01-06
| | | | * gnu/packages/bioconductor.scm (r-tximeta): Update to 1.12.4.
* gnu: r-tcgabiolinks: Update to 2.22.2.Ricardo Wurmus2022-01-06
| | | | * gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.22.2.
* gnu: r-biodb: Update to 1.2.2.Ricardo Wurmus2022-01-06
| | | | * gnu/packages/bioconductor.scm (r-biodb): Update to 1.2.2.
* gnu: r-sushi: Update to 1.32.0.Ricardo Wurmus2022-01-06
| | | | * gnu/packages/bioconductor.scm (r-sushi): Update to 1.32.0.
* gnu: r-bioassayr: Update to 1.32.1.Ricardo Wurmus2022-01-06
| | | | * gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.32.1.
* gnu: r-universalmotif: Update to 1.12.2.Ricardo Wurmus2022-01-06
| | | | * gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.12.2.
* gnu: r-cytolib: Update to 2.6.1.Ricardo Wurmus2022-01-06
| | | | * gnu/packages/bioconductor.scm (r-cytolib): Update to 2.6.1.
* gnu: r-clusterprofiler: Update to 4.2.1.Ricardo Wurmus2022-01-06
| | | | * gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.2.1.
* gnu: r-icobra: Update to 1.22.2.Ricardo Wurmus2022-01-06
| | | | * gnu/packages/bioconductor.scm (r-icobra): Update to 1.22.2.
* gnu: r-destiny: Update to 3.8.0.Ricardo Wurmus2022-01-06
| | | | * gnu/packages/bioconductor.scm (r-destiny): Update to 3.8.0.
* gnu: r-diffbind: Update to 3.4.3.Ricardo Wurmus2022-01-06
| | | | * gnu/packages/bioconductor.scm (r-diffbind): Update to 3.4.3.
* gnu: r-systempiper: Update to 2.0.5.Ricardo Wurmus2022-01-06
| | | | * gnu/packages/bioconductor.scm (r-systempiper): Update to 2.0.5.
* gnu: r-structuralvariantannotation: Update to 1.10.1.Ricardo Wurmus2022-01-06
| | | | * gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.10.1.
* gnu: r-genomicfeatures: Update to 1.46.3.Ricardo Wurmus2022-01-06
| | | | * gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.46.3.
* gnu: r-chipseeker: Update to 1.30.3.Ricardo Wurmus2022-01-06
| | | | * gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.30.3.
* gnu: r-biocparallel: Update to 1.28.3.Ricardo Wurmus2022-01-06
| | | | * gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.28.3.
* gnu: r-yapsa: Update to 1.20.1.Ricardo Wurmus2022-01-06
| | | | | * gnu/packages/bioconductor.scm (r-yapsa): Update to 1.20.1. [propagated-inputs]: Remove r-pmcmr; add r-pmcmrplus.
* gnu: r-activedriverwgs: Update to 1.0.3.Ricardo Wurmus2022-01-05
| | | | * gnu/packages/bioconductor.scm (r-activedriverwgs): Update to 1.0.3.
* gnu: r-activedriverwgs: Update to 1.1.2.Ricardo Wurmus2022-01-05
| | | | | | * gnu/packages/bioconductor.scm (r-activedriverwgs): Update to 1.1.2. [propagated-inputs]: Add r-bsgenome-hsapiens-ucsc-hg38, r-bsgenome-mmusculus-ucsc-mm9, and r-bsgenome-mmusculus-ucsc-mm10.
* gnu: r-valr: Update to 0.6.4.Ricardo Wurmus2022-01-05
| | | | | | * gnu/packages/cran.scm (r-valr): Move from here... * gnu/packages/bioconductor.scm (r-valr): ...to here. Update to 0.6.4. [propagated-inputs]: Add r-rtracklayer.
* gnu: Add r-singler.Ricardo Wurmus2021-12-16
| | | | * gnu/packages/bioconductor.scm (r-singler): New variable.
* gnu: Add r-celldex.Ricardo Wurmus2021-12-16
| | | | * gnu/packages/bioconductor.scm (r-celldex): New variable.
* gnu: Add r-maftools.Ricardo Wurmus2021-12-14
| | | | * gnu/packages/bioconductor.scm (r-maftools): New variable.
* gnu: Add r-tcgabiolinks.Ricardo Wurmus2021-12-14
| | | | * gnu/packages/bioconductor.scm (r-tcgabiolinks): New variable.
* gnu: Add r-tcgabiolinksgui-data.Ricardo Wurmus2021-12-14
| | | | * gnu/packages/bioconductor.scm (r-tcgabiolinksgui-data): New variable.
* Merge branch 'core-updates-frozen' into 'master'.Maxim Cournoyer2021-12-13
|\ | | | | | | At last!
| * gnu: Further simplify package inputs.Ludovic Courtès2021-12-13
| | | | | | | | | | | | | | | | | | This is the result of running: ./pre-inst-env guix style --input-simplification=safe and manually undoing changes on a dozen of packages to reduce rebuilds (derivations for emacs, icecat, and libreoffice are unchanged.)
| * gnu: Simplify package inputs.Ludovic Courtès2021-12-13
| | | | | | | | | | | | | | | | This commit was obtained by running: ./pre-inst-env guix style without any additional argument.
* | gnu: Add r-chromvarmotifs.Mădălin Ionel Patrașcu2021-12-13
|/ | | | | | * gnu/packages/bioconductor.scm (r-chromvarmotifs): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add r-sanssouci.Ricardo Wurmus2021-12-13
| | | | * gnu/packages/bioconductor.scm (r-sanssouci): New variable.
* gnu: Add r-isoformswitchanalyzer.Ricardo Wurmus2021-12-13
| | | | * gnu/packages/bioconductor.scm (r-isoformswitchanalyzer): New variable.
* gnu: Add r-drimseq.Ricardo Wurmus2021-12-13
| | | | * gnu/packages/bioconductor.scm (r-drimseq): New variable.
* gnu: Add r-dearseq.Marcel Schilling2021-12-13
| | | | | | * gnu/packages/bioconductor.scm (r-dearseq): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: r-flowclust: Add gsl.Ricardo Wurmus2021-12-03
| | | | | * gnu/packages/bioconductor.scm (r-flowclust)[inputs]: Remove accidentally committed comment character.
* gnu: Add r-scdblfinder.Ricardo Wurmus2021-12-02
| | | | * gnu/packages/bioconductor.scm (r-scdblfinder): New variable.
* gnu: Add r-phyloseq.Nicolas Vallet2021-12-01
| | | | | | * gnu/packages/cran.scm (r-phyloseq): New variable Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add r-fmcsr.Ricardo Wurmus2021-11-30
| | | | * gnu/packages/bioconductor.scm (r-fmcsr): New variable.
* gnu: Add r-xmapbridge.Mădălin Ionel Patrașcu2021-11-27
| | | | | | * gnu/packages/bioconductor.scm (r-xmapbridge): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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