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authorRicardo Wurmus <rekado@elephly.net>2020-09-14 21:37:22 +0200
committerRicardo Wurmus <rekado@elephly.net>2020-09-14 21:40:15 +0200
commit3159fcf14519f02c79ad84b441985982cb1efeb9 (patch)
treed0af889a9ec79145f1c038256280b60f030d01e9 /gnu/packages/bioconductor.scm
parent3292f6eda0a89f65a0e3d5c0dc9fee71895dfa25 (diff)
downloadguix-patches-3159fcf14519f02c79ad84b441985982cb1efeb9.tar
guix-patches-3159fcf14519f02c79ad84b441985982cb1efeb9.tar.gz
gnu: r-wgcna: Move to (gnu packages bioconductor).
This is a follow-up to commit 6e0ab26f31cd2bb7e5d88719d3d458df68c1963e. * gnu/packages/cran.scm (r-wgcna): Move from here... * gnu/packages/bioconductor.scm (r-wgcna): ...to here.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm40
1 files changed, 40 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index f52025da91..9d5c69e45e 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -8310,6 +8310,46 @@ generated.")
routines.")
(license license:lgpl2.0+)))
+;; This is a CRAN package, but it depends on preprocessorcore, which is a
+;; Bioconductor package.
+(define-public r-wgcna
+ (package
+ (name "r-wgcna")
+ (version "1.69")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "WGCNA" version))
+ (sha256
+ (base32
+ "022hkprnrafvggi8pkjffkvk1qlnibmbbxxrni00wkrdbga5589f"))))
+ (properties `((upstream-name . "WGCNA")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-doparallel" ,r-doparallel)
+ ("r-dynamictreecut" ,r-dynamictreecut)
+ ("r-fastcluster" ,r-fastcluster)
+ ("r-foreach" ,r-foreach)
+ ("r-go-db" ,r-go-db)
+ ("r-hmisc" ,r-hmisc)
+ ("r-impute" ,r-impute)
+ ("r-rcpp" ,r-rcpp)
+ ("r-survival" ,r-survival)
+ ("r-matrixstats" ,r-matrixstats)
+ ("r-preprocesscore" ,r-preprocesscore)))
+ (home-page
+ "http://www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/Rpackages/WGCNA/")
+ (synopsis "Weighted correlation network analysis")
+ (description
+ "This package provides functions necessary to perform Weighted
+Correlation Network Analysis on high-dimensional data. It includes functions
+for rudimentary data cleaning, construction and summarization of correlation
+networks, module identification and functions for relating both variables and
+modules to sample traits. It also includes a number of utility functions for
+data manipulation and visualization.")
+ (license license:gpl2+)))
+
(define-public r-rgraphviz
(package
(name "r-rgraphviz")