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authorzimoun <zimon.toutoune@gmail.com>2020-09-14 18:07:46 +0200
committerRicardo Wurmus <rekado@elephly.net>2020-09-14 21:40:15 +0200
commit3292f6eda0a89f65a0e3d5c0dc9fee71895dfa25 (patch)
treeb633936670013f70b5461e82b735f8d47a8889e1 /gnu/packages/bioconductor.scm
parent7df42d3774778dfbb92e935df720f6eb52965e66 (diff)
downloadguix-patches-3292f6eda0a89f65a0e3d5c0dc9fee71895dfa25.tar
guix-patches-3292f6eda0a89f65a0e3d5c0dc9fee71895dfa25.tar.gz
gnu: r-fithic: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-fithic): Move from here... * gnu/packages/bioconductor.scm (r-fithic): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm26
1 files changed, 26 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index aeb89ae237..f52025da91 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -8348,6 +8348,32 @@ routines.")
objects from the @code{graph} package.")
(license license:epl1.0)))
+(define-public r-fithic
+ (package
+ (name "r-fithic")
+ (version "1.14.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "FitHiC" version))
+ (sha256
+ (base32
+ "1dffkdxm08wq4kjd9j2v2625x3p6vbrk33a2zx94pwpgkghr72yp"))))
+ (properties `((upstream-name . "FitHiC")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-data-table" ,r-data-table)
+ ("r-fdrtool" ,r-fdrtool)
+ ("r-rcpp" ,r-rcpp)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://bioconductor.org/packages/FitHiC")
+ (synopsis "Confidence estimation for intra-chromosomal contact maps")
+ (description
+ "Fit-Hi-C is a tool for assigning statistical confidence estimates to
+intra-chromosomal contact maps produced by genome-wide genome architecture
+assays such as Hi-C.")
+ (license license:gpl2+)))
+
(define-public r-hitc
(package
(name "r-hitc")