From 3159fcf14519f02c79ad84b441985982cb1efeb9 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 14 Sep 2020 21:37:22 +0200
Subject: gnu: r-wgcna: Move to (gnu packages bioconductor).

This is a follow-up to commit 6e0ab26f31cd2bb7e5d88719d3d458df68c1963e.

* gnu/packages/cran.scm (r-wgcna): Move from here...
* gnu/packages/bioconductor.scm (r-wgcna): ...to here.
---
 gnu/packages/bioconductor.scm | 40 ++++++++++++++++++++++++++++++++++++++++
 1 file changed, 40 insertions(+)

(limited to 'gnu/packages/bioconductor.scm')

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index f52025da91..9d5c69e45e 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -8310,6 +8310,46 @@ generated.")
 routines.")
     (license license:lgpl2.0+)))
 
+;; This is a CRAN package, but it depends on preprocessorcore, which is a
+;; Bioconductor package.
+(define-public r-wgcna
+  (package
+    (name "r-wgcna")
+    (version "1.69")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "WGCNA" version))
+       (sha256
+        (base32
+         "022hkprnrafvggi8pkjffkvk1qlnibmbbxxrni00wkrdbga5589f"))))
+    (properties `((upstream-name . "WGCNA")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-annotationdbi" ,r-annotationdbi)
+       ("r-doparallel" ,r-doparallel)
+       ("r-dynamictreecut" ,r-dynamictreecut)
+       ("r-fastcluster" ,r-fastcluster)
+       ("r-foreach" ,r-foreach)
+       ("r-go-db" ,r-go-db)
+       ("r-hmisc" ,r-hmisc)
+       ("r-impute" ,r-impute)
+       ("r-rcpp" ,r-rcpp)
+       ("r-survival" ,r-survival)
+       ("r-matrixstats" ,r-matrixstats)
+       ("r-preprocesscore" ,r-preprocesscore)))
+    (home-page
+     "http://www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/Rpackages/WGCNA/")
+    (synopsis "Weighted correlation network analysis")
+    (description
+     "This package provides functions necessary to perform Weighted
+Correlation Network Analysis on high-dimensional data.  It includes functions
+for rudimentary data cleaning, construction and summarization of correlation
+networks, module identification and functions for relating both variables and
+modules to sample traits.  It also includes a number of utility functions for
+data manipulation and visualization.")
+    (license license:gpl2+)))
+
 (define-public r-rgraphviz
   (package
     (name "r-rgraphviz")
-- 
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