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* gnu: python-notebook: Update to 6.3.0.Ricardo Wurmus2021-04-13
| | | | * gnu/packages/python-xyz.scm (python-notebook): Update to 6.3.0.
* gnu: python-widgetsnbextension: Add missing inputs.Ricardo Wurmus2021-04-13
| | | | | * gnu/packages/python-xyz.scm (python-widgetsnbextension)[propagated-inputs]: Add python-argon2-cffi and python-terminado.
* gnu: python-ipykernel: Update to 5.5.3.Ricardo Wurmus2021-04-13
| | | | * gnu/packages/python-xyz.scm (python-ipykernel): Update to 5.5.3.
* gnu: python-jupyter-client: Update to 6.1.12.Ricardo Wurmus2021-04-13
| | | | | | * gnu/packages/python-xyz.scm (python-jupyter-client): Update to 6.1.12. [propagated-inputs]: Add python-dateutil and python-tornado-6. [native-inputs]: Add python-pytest.
* gnu: python-jupyter-core: Update to 4.7.1.Ricardo Wurmus2021-04-13
| | | | * gnu/packages/python-xyz.scm (python-jupyter-core): Update to 4.7.1.
* gnu: python-terminado: Update to 0.9.4.Ricardo Wurmus2021-04-13
| | | | | | | | * gnu/packages/python-web.scm (python-terminado): Update to 0.9.4. [propagated-inputs]: Replace python-tornado with python-tornado-6. [native-inputs]: Replace python-nose with python-pytest. [home-page]: Follow redirect. [arguments]: Update check phase.
* gnu: esbuild: Update to 0.11.9.Ryan Prior2021-04-13
| | | | | | * gnu/packages/web.scm (esbuild): Update to 0.11.9. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu: visidata: Update to 2.4.Ryan Prior2021-04-13
| | | | | | * gnu/packages/visidata.scm (visidata): Update to 2.4. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu: gnu-standards: Update to 2020-11-25.Morgan Smith2021-04-13
| | | | | | | | * gnu/packages/gnu-doc.scm (gnu-standards): Update to 2020-11-25. [source]: Make file-name more descriptive. Use version variable for revision. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu: Add texlive-xcharter.Paul Garlick2021-04-13
| | | | * gnu/packages/tex.scm: New variable.
* tests: halt: Fix it.Mathieu Othacehe2021-04-13
| | | | | | | | This fixes: <https://issues.guix.gnu.org/47727>. The OCR prompt detection is failing, so remove it altogether. It looks like the test doesn't need the prompt detection delay to work properly. * gnu/tests/base.scm (run-halt-test): Remove failing OCR detection.
* services: postgresql: Change service default socket directory.Christopher Baines2021-04-12
| | | | | | | | | | | | | | | | | | | | | | | Fixes <https://bugs.gnu.org/46737>. PostgreSQL running with a different socket directory to the default one in the package itself breaks some services, this commit restores the previous behaviour where PostgreSQL by default will run with a socket directory that matches the default used by PostgreSQL packaged for Guix. Switching to a different default value can happen, but only alongside changing the PostgreSQL package. * gnu/services/databases.scm (<postgresql-config-file>)[socket-directory]: Change default to #false. * doc/guix.texi (Database Services): Update documentation, and specify a different value for disabling connections via sockets. * gnu/tests/guix.scm (%guix-data-service-os): Use default PostgreSQL behaviour. * gnu/tests/monitoring.scm (%zabbix-os): Likewise. * gnu/tests/web.scm (patchwork-os): Likewise. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: guile-picture-language: Update to 0.0.1-5.a1322bf.Ricardo Wurmus2021-04-12
| | | | | * gnu/packages/guile-xyz.scm (guile-picture-language): Update to 0.0.1-5.a1322bf.
* services: ipfs: Tweak description.Ludovic Courtès2021-04-12
| | | | | * gnu/services/networking.scm (ipfs-service-type)[description]: Avoid abbreviation.
* gnu: tests: Test basic funtionality of the IPFS service.Maxime Devos2021-04-12
| | | | | | | | | | | | | It is tested whether the IPFS service listens at the gateway and API ports and whether it is possible to upload and download a bytevector. * gnu/tests/networking.scm (%ipfs-os): New variable. (run-ipfs-test): New procedure. (%test-ipfs): New system test. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* tests: Support package extensions in the backdoor REPL.Maxime Devos2021-04-12
| | | | | | | | | | * gnu/tests.scm (<marionette-configuration>): Add 'extensions' field. (marionette-shepherd-service): Honour the field. (with-import-modules-and-extensions): Define a combination of 'with-import-modules' and 'with-extensions'. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* services: Add ipfs-service-typeMaxime Devos2021-04-12
| | | | | | | | | | | | | * gnu/services/networking.scm (ipfs-service-type) (%ipfs-home-mapping, %ipfs-environment) (%ipfs-accounts, %ipfs-home): New variables. (ipfs-configuration, ipfs-configuration?) (ipfs-configuration-package, ipfs-configuration-gateway) (ipfs-configuration-api, ipfs-shepherd-service) (ipfs-binary, %ipfs-activation): New procedures. * doc/guix.texi (Networking Services): Document it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: racket: Don't inject store paths into Racket files.Philip McGrath2021-04-12
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Apparently, during grafting, Guix can somehow mangle compiled Racket CS files (.zo) such that Racket will refuse to load them. (Maybe it has something to do with compression?) So, we stop patching Racket sources with absolute paths to store files (i.e. for foreign libraries to dlopen). Instead, we put them in a data file that doesn't get compiled or, in one case, embed it in C. Fixes https://issues.guix.gnu.org/47064 * gnu/packages/patches/racket-sh-via-rktio.patch: New file. Adds a special case at the C level, controlled by a preprocessor macro, to handle attempts to execute "/bin/sh". * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/scheme.scm (racket)[source](patches): Apply it. (racket)[arguments](#:configure-flags): Add the CPP flag to enable it. (racket)[arguments](#:modules): Use srfi-1. (racket)[arguments](#:phases): Remove 'patch-/bin/sh and 'pre-configure. Change 'pre-configure-minimal to just change directory. Add 'patch-config.rktd-lib-search-dirs after 'build and before 'install to configure Racket's "lib-search-dirs". (racket, racket-minimal)[inputs]: Add bash-minimal as an explicit input. (racket-minimal)[source]: Adjust to inherit patches from racket. (racket-minimal)[arguments]: Inherit from racket: changes no longer needed. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add r-txdb-dmelanogaster-ucsc-dm6-ensgene.hli2021-04-12
| | | | | | | * gnu/packages/bioconductor.scm (r-txdb-dmelanogaster-ucsc-dm6-ensgene): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* services: Support DELETE in MODIFY-SERVICES macro.Ricardo Wurmus2021-04-12
| | | | | | | * gnu/services.scm (%modify-service): Add clause for DELETE syntax. (modify-services): Use FILTER-MAP; adjust docstring. * doc/guix.texi (System Services): Mention alternative syntax. (X Window): Use MODIFY-SERVICES syntax.
* gnu: Add cl-bodge-queue.Adam Kandur2021-04-12
| | | | | | | * gnu/packages/lisp-xyz.scm (sbcl-bodge-queue, cl-bodge-queue, ecl-bodge-queue): New variables. Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
* gnu: hydrogen: Update to 1.0.2.Nicolas Goaziou2021-04-12
| | | | * gnu/packages/music.scm (hydrogen): Update to 1.0.2.
* gnu: Add openvdb.Ekaitz Zarraga2021-04-12
| | | | | | * gnu/packages/graphics.scm (openvdb): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add texlive-newtx.Paul Garlick2021-04-12
| | | | * gnu/packages/tex.scm: New variable.
* gnu: java-eclipse-jetty-util: Update to 9.4.39 [security fixes].Julien Lepiller2021-04-12
| | | | | | | | | | | | | | Fixes CVE-2021-28165 - jetty server high CPU when client send data length > 17408, CVE-2021-28164 - Normalize ambiguous URIs and CVE-2021-28163 - Exclude webapps directory from deployment scan. * gnu/packages/java.scm (java-eclipse-jetty-util): Update to 9.4.39. (java-eclipse-jetty-util-ajax): New variable. (java-eclipse-jetty-util, java-eclipse-jetty-io, java-eclipse-jetty-http) (java-eclipse-jetty-jmx, java-eclipse-jetty-server) (java-eclipse-jetty-security, java-eclipse-jetty-servlet) (java-eclipse-jetty-xml, java-eclipse-jetty-webapp): Disable tests. [native-inputs]: Remove test dependencies.
* gnu: hangups: Run test suite.Efraim Flashner2021-04-12
| | | | | * gnu/packages/messaging.scm (hangups)[arguments]: Use custom 'check phase.
* gnu: hangups: Loosen version restrictions further.Efraim Flashner2021-04-12
| | | | | * gnu/packages/messaging.scm (hangups)[arguments]: Adjust custom 'relax-dependencies phase to allow more dependency versions.
* gnu: python-mechanicalsoup: Update to 1.0.0.Ekaitz Zarraga2021-04-12
| | | | | | | | | | | * gnu/packages/python-web.scm (python-mechanicalsoup): Update to 1.0.0. [arguments]: Enable tests. [native-inputs]: Add python-pytest-flake8, python-pytest-httpbin, python-pytest-cov, python-pytest-mock, python-pytest-runner, python-requests-mock. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* tests: docker: Increase VM building memory size to 1024MiB.Mathieu Othacehe2021-04-12
| | | | | | | | | | | | | | | This fixes the following error when running the "docker-system" test: In ice-9/ftw.scm: 553:30 1 (_ #<directory stream db6660>) In unknown file: 0 (readdir #<directory stream db6660>) ERROR: In procedure readdir: In procedure readdir: Cannot allocate memory * gnu/tests/docker.scm (%test-docker-system): Bump image building VM memory size to 1024 MiB.
* system: vm: Add a memory-size argument to system-docker-image.Mathieu Othacehe2021-04-12
| | | | | * gnu/system/vm.scm (system-docker-image): Add a memory-size argument and pass it to expression->derivation-in-linux-vm.
* gnu: renpy: Update to 7.4.4.Leo Prikler2021-04-12
| | | | | * gnu/packages/game-development.scm (python2-renpy): Update to 7.4.4. (python2-pygame-sdl2)[renpy-version]: Likewise.
* gnu: nginx: Enable stream module.methuselah-02021-04-12
| | | | | | * gnu/packages/web.scm (nginx)[arguments]: Add --with-stream option in the 'configure phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add prips.methuselah-02021-04-12
| | | | | | gnu/packages/admin.scm (prips): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: blis: Add deprecated aliases.Ludovic Courtès2021-04-12
| | | | | | | Add deprecated aliases for packages removed in the parent commit. * gnu/packages/maths.scm (blis-sandybridge, blis-haswell, blis-knl): New variables.
* gnu: blis: Update to 0.8.1.Philip McGrath2021-04-12
| | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (make-blis): Remove internal function. Inline into ... (bliss): ... this variable. Update to 0.8.1. [native-inputs]: Add "python" and "perl". [arguments]: Adjust 'configure' phase to take advantage of new support for "configuration families" with runtime hardware detection. Select configuration automatically based on target systems, and allow "--blis-config=" in #:configure-flags to override the default. When building for x86_64, include all supported microarchetecture specializations. Add "--enable-verbose-make" configure flag for better build logs. Stop ignoring other flags from #:configure-flags. Remove explicit #:substitutable? argument: the package is now always substitutable. Add (srfi srfi-1) to #:modules. (blis/x86_64): Remove internal macro. (blis-sandybridge): Remove package: included in 'blis'. (blis-haswell): Remove package: included in 'blis'. (blis-knl): Remove package: included in 'blis'. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* ci: Fix system-tests subset.Mathieu Othacehe2021-04-12
| | | | | * gnu/ci.scm (system-test-jobs): Make sure that "all-system-tests" is also covered by the "current-guix-package" parameter.
* gnu: monero-gui: Update to 0.17.2.0.Guillaume Le Vaillant2021-04-12
| | | | * gnu/packages/finance.scm (monero-gui): Update to 0.17.2.0.
* gnu: monero: Update to 0.17.2.0.Guillaume Le Vaillant2021-04-12
| | | | * gnu/packages/finance.scm (monero): Update to 0.17.2.0.
* gnu: newlib-nano: Fix nano lib and header paths.Morgan Smith2021-04-12
| | | | | | | * gnu/packages/embedded.scm (newlib-nano-arm-none-eabi)[arguments]: Hard link library files from *.a to *_nano.a. Hard link newlib.h to a common location. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu: electron-cash: Add missing input.Guillaume Le Vaillant2021-04-12
| | | | | | Fixes <https://bugs.gnu.org/47654>. * gnu/packages/finance.scm (electron-cash)[inputs]: Add python-pathvalidate.
* gnu: Add python-pathvalidate.Guillaume Le Vaillant2021-04-12
| | | | * gnu/packages/python-xyz.scm (python-pathvalidate): New variable.
* gnu: Add python-allpairspy.Guillaume Le Vaillant2021-04-12
| | | | * gnu/packages/python-check.scm (python-allpairspy): New variable.
* gnu: Syncthing: Update to 1.15.1 [fixes CVE-2021-21404].Leo Famulari2021-04-11
| | | | | | | | | * gnu/packages/syncthing.scm (syncthing): Update to 1.15.1. [source]: Use bundled dependencies. [inputs]: Remove field. [arguments]: Adjust the custom 'build' and 'install' phases for 1.15.1. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: python-cython: Update to 0.29.22.Tobias Geerinckx-Rice2021-04-12
| | | | * gnu/packages/python-xyz.scm (python-cython): Update to 0.29.22.
* gnu: python-fastimport: Update to 0.9.9.Tobias Geerinckx-Rice2021-04-12
| | | | * gnu/packages/python-xyz.scm (python-fastimport): Update to 0.9.9.
* gnu: minetest: Update to 5.4.1.Tobias Geerinckx-Rice2021-04-12
| | | | * gnu/packages/games.scm (minetest, minetest-data): Update to 5.4.1.
* gnu: ghq: Update to 1.1.7.Tobias Geerinckx-Rice2021-04-12
| | | | * gnu/packages/version-control.scm (ghq): Update to 1.1.7.
* gnu: lagrange: Update to 1.3.2.Tobias Geerinckx-Rice2021-04-11
| | | | * gnu/packages/web-browsers.scm (lagrange): Update to 1.3.2.
* gnu: irssi: Update to 1.2.3.Tobias Geerinckx-Rice2021-04-11
| | | | * gnu/packages/irc.scm (irssi): Update to 1.2.3.
* gnu: edgar: Update to 1.34.Tobias Geerinckx-Rice2021-04-11
| | | | * gnu/packages/games.scm (edgar): Update to 1.34.
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