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author | Ricardo Wurmus <rekado@elephly.net> | 2019-12-15 14:25:45 +0100 |
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committer | Ricardo Wurmus <rekado@elephly.net> | 2019-12-15 15:38:52 +0100 |
commit | 6aedc805146986e6fe8c8191fcf321b8fbe555ca (patch) | |
tree | 26aafb5d1c2a2b1f6364ce1c0ee294f5e4ba0cf1 | |
parent | b700b9ec21d5fb7664860a777c51f07015af5339 (diff) | |
download | guix-patches-6aedc805146986e6fe8c8191fcf321b8fbe555ca.tar guix-patches-6aedc805146986e6fe8c8191fcf321b8fbe555ca.tar.gz |
gnu: Add r-opencyto.
* gnu/packages/bioconductor.scm (r-opencyto): New variable.
-rw-r--r-- | gnu/packages/bioconductor.scm | 42 |
1 files changed, 42 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index d5eca996ac..56d32ed0d9 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -5585,6 +5585,48 @@ that is beyond the basic infrastructure provided by the @code{flowCore} package.") (license license:artistic2.0))) +(define-public r-opencyto + (package + (name "r-opencyto") + (version "1.24.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "openCyto" version)) + (sha256 + (base32 + "0h25nhvq1zq624wsgb55wjcgri9rcd2fnqkb31h9jdakr01dw2sb")))) + (properties `((upstream-name . "openCyto"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biobase" ,r-biobase) + ("r-biocgenerics" ,r-biocgenerics) + ("r-clue" ,r-clue) + ("r-data-table" ,r-data-table) + ("r-flowclust" ,r-flowclust) + ("r-flowcore" ,r-flowcore) + ("r-flowstats" ,r-flowstats) + ("r-flowviz" ,r-flowviz) + ("r-flowworkspace" ,r-flowworkspace) + ("r-graph" ,r-graph) + ("r-gtools" ,r-gtools) + ("r-ks" ,r-ks) + ("r-lattice" ,r-lattice) + ("r-mass" ,r-mass) + ("r-ncdfflow" ,r-ncdfflow) + ("r-plyr" ,r-plyr) + ("r-r-utils" ,r-r-utils) + ("r-rbgl" ,r-rbgl) + ("r-rcolorbrewer" ,r-rcolorbrewer) + ("r-rcpp" ,r-rcpp) + ("r-rrcov" ,r-rrcov))) + (home-page "https://bioconductor.org/packages/openCyto") + (synopsis "Hierarchical gating pipeline for flow cytometry data") + (description + "This package is designed to facilitate the automated gating methods in a +sequential way to mimic the manual gating strategy.") + (license license:artistic2.0))) + (define-public r-flowsom (package (name "r-flowsom") |