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* gnu: gsl: Disable failing tests on powerpc.Efraim Flashner2020-05-17
| | | | | * gnu/packages/maths.scm (gsl)[arguments]: Skip the same set of tests on powerpc as skipped on aarch64.
* gnu: z3: Update to 4.8.8.Tobias Geerinckx-Rice2020-05-16
| | | | * gnu/packages/maths.scm (z3): Update to 4.8.8.
* mailmap: Update entries for Nikita.nikita2020-05-13
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * .mailmap: change email and name for Nikita. * Makefile.am, doc/guix.texi, etc/completion/fish/guix.fish, gnu/packages/accessibility.scm, gnu/packages/admin.scm, gnu/packages/audio.scm, gnu/packages/autotools.scm, gnu/packages/cdrom.scm, gnu/packages/check.scm, gnu/packages/cinnamon.scm, gnu/packages/compression.scm, gnu/packages/crypto.scm, gnu/packages/databases.scm, gnu/packages/django.scm, gnu/packages/dns.scm, gnu/packages/elixir.scm, gnu/packages/emacs-xyz.scm, gnu/packages/emacs.scm, gnu/packages/enlightenment.scm, gnu/packages/erlang.scm, gnu/packages/fonts.scm, gnu/packages/fontutils.scm, gnu/packages/forth.scm, gnu/packages/fvwm.scm, gnu/packages/games.scm, gnu/packages/gl.scm, gnu/packages/gnome.scm, gnu/packages/gnunet.scm, gnu/packages/gnupg.scm, gnu/packages/gtk.scm, gnu/packages/guile-wm.scm, gnu/packages/guile-xyz.scm, gnu/packages/haskell-apps.scm, gnu/packages/haskell-check.scm, gnu/packages/haskell-crypto.scm, gnu/packages/haskell-xyz.scm, gnu/packages/haskell.scm, gnu/packages/image-viewers.scm, gnu/packages/image.scm, gnu/packages/irc.scm, gnu/packages/language.scm, gnu/packages/libcanberra.scm, gnu/packages/linux.scm, gnu/packages/lisp-xyz.scm, gnu/packages/lisp.scm, gnu/packages/lolcode.scm, gnu/packages/lxde.scm, gnu/packages/lxqt.scm, gnu/packages/mail.scm, gnu/packages/markup.scm, gnu/packages/mate.scm, gnu/packages/maths.scm, gnu/packages/mc.scm, gnu/packages/messaging.scm, gnu/packages/music.scm, gnu/packages/ncurses.scm, gnu/packages/networking.scm, gnu/packages/nickle.scm, gnu/packages/openbox.scm, gnu/packages/pdf.scm, gnu/packages/perl-check.scm, gnu/packages/perl.scm, gnu/packages/python-compression.scm, gnu/packages/python-crypto.scm, gnu/packages/python-web.scm, gnu/packages/python-xyz.scm, gnu/packages/python.scm, gnu/packages/qt.scm, gnu/packages/ruby.scm, gnu/packages/rust.scm, gnu/packages/scheme.scm, gnu/packages/serialization.scm, gnu/packages/shells.scm, gnu/packages/ssh.scm, gnu/packages/suckless.scm, gnu/packages/tbb.scm, gnu/packages/telephony.scm, gnu/packages/text-editors.scm, gnu/packages/textutils.scm, gnu/packages/time.scm, gnu/packages/tls.scm, gnu/packages/tor.scm, gnu/packages/version-control.scm, gnu/packages/video.scm, gnu/packages/vim.scm, gnu/packages/web.scm, gnu/packages/wm.scm, gnu/packages/xdisorg.scm, gnu/packages/xfce.scm, gnu/packages/xml.scm, gnu/packages/xorg.scm, gnu/services/certbot.scm, gnu/services/desktop.scm, gnu/services/version-control.scm, gnu/services/web.scm, guix/import/hackage.scm, guix/licenses.scm: Likewise. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu: glm: Update to 0.9.9.8.Marius Bakke2020-05-13
| | | | | | | * gnu/packages/patches/glm-restore-install-target.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/maths.scm (glm): Update to 0.9.9.8. [arguments]: New field.
* gnu: flann: Update to 1.9.1.Ludovic Courtès2020-05-10
| | | | | | * gnu/packages/maths.scm (flann): Update to 1.9.1. [source]: Use 'git-fetch'. [home-page]: Change to github.com.
* gnu: flann: Remove "octave" output.Ludovic Courtès2020-05-10
| | | | | | | | | Octave support currently fails to build and is not used by any other package in Guix. * gnu/packages/maths.scm (flann)[outputs]: Remove "octave" output. [inputs]: Remove OCTAVE-CLI. [arguments]: Remove 'set-octave-directory' phase.
* Merge branch 'master' into core-updatesMarius Bakke2020-04-30
|\ | | | | | | | | | | | | | | | | | | | | | | | | Conflicts: gnu/local.mk gnu/packages/backup.scm gnu/packages/emacs-xyz.scm gnu/packages/guile.scm gnu/packages/lisp.scm gnu/packages/openldap.scm gnu/packages/package-management.scm gnu/packages/web.scm gnu/packages/xorg.scm
| * gnu: Add hdf5-blosc.Ricardo Wurmus2020-04-28
| | | | | | | | * gnu/packages/maths.scm (hdf5-blosc): New variable.
* | Merge branch 'master' into core-updatesMarius Bakke2020-04-23
|\| | | | | | | | | | | | | | | | | | | | | Conflicts: etc/news.scm gnu/local.mk gnu/packages/bootloaders.scm gnu/packages/linphone.scm gnu/packages/linux.scm gnu/packages/tls.scm gnu/system.scm
| * gnu: maths: dune-*: Update to version 2.7Felix Gruber2020-04-22
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (dune-*): Update to version 2.7. (dune-uggrid)[source] Download from Git, as no release tarball for version 2.7 exists. (dune-alugrid,dune-subgrid,dune-pdelab)[source] Use commit hashes as no tags for version 2.7 exist (yet?). (dune-istl)[source](patches) Add patch required to build version 2.7 without openmpi. * gnu/packages/patches/dune-istl-2.7-fix-non-mpi-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: libqalculate: Fix libcurl gnutls CA cert bundle file.R Veera Kumar2020-04-20
| | | | | | | | | | | | | | | | * gnu/packages/patches/libqalculate-3.8.0-libcurl-ssl-fix.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/maths.scm (libqalculate)[source]: Use it. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* | gnu: dune-localfunctions: Fix build failure.Marius Bakke2020-04-14
| | | | | | | | | | * gnu/packages/maths.scm (dune-localfunctions)[arguments]: Add phase 'hide-gfortran'.
* | gnu: dune-istl: Fix build failure.Marius Bakke2020-04-14
| | | | | | | | * gnu/packages/maths.scm (dune-istl)[arguments]: Add phase 'hide-gfortran'.
* | Merge branch 'master' into core-updatesMarius Bakke2020-04-13
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| * gnu: dune-subgrid: Fix grammar of "allows to mark" to "marks".Vagrant Cascadian2020-04-12
| | | | | | | | * gnu/packages/maths (dune-subgrid): Fix grammar.
| * gnu: libqalculate: Fix spelling of "uncertainty".Vagrant Cascadian2020-04-12
| | | | | | | | * gnu/packages/maths (libqalculate): Fix typo.
* | Merge branch 'master' into core-updatesMarius Bakke2020-04-08
|\| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Conflicts: etc/news.scm gnu/local.mk gnu/packages/check.scm gnu/packages/cross-base.scm gnu/packages/gimp.scm gnu/packages/java.scm gnu/packages/mail.scm gnu/packages/sdl.scm gnu/packages/texinfo.scm gnu/packages/tls.scm gnu/packages/version-control.scm
| * gnu: Add dsfmt.Nicolò Balzarotti2020-04-07
| | | | | | | | | | | | * gnu/packages/maths.scm (dsfmt): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| * gnu: scotch: Make some inputs native.Vincent Legoll2020-04-04
| | | | | | | | | | | | | | * gnu/packages/math.scm (scotch)[inputs]: Move flex & bison from here... [native-inputs]: ...to this new field. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
| * gnu: Add qalculate-gtk.R Veera Kumar2020-04-03
| | | | | | | | | | | | * gnu/packages/maths.scm (qalculate-gtk): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: Add libqalculate.R Veera Kumar2020-04-03
| | | | | | | | | | | | * gnu/packages/maths.scm (libqalculate): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* | gnu: octave-cli: Fix build.Marius Bakke2020-04-05
| | | | | | | | | | * gnu/packages/maths.scm (octave-cli)[inputs]: Add LIBJPEG-TURBO. [arguments]: Add "--enable-link-all-dependencies" in #:configure-flags.
* | gnu: GSL: Remove unnecessary (%current-system) call.Marius Bakke2020-04-03
| | | | | | | | | | * gnu/packages/maths.scm (gsl)[arguments]: Use the let-bound SYSTEM variable instead of %CURRENT-SYSTEM.
* | gnu: GSL: Disable failing tests on i686-linux and aarch64-linux.Marius Bakke2020-04-03
| | | | | | | | | | | | | | | | | | This follows up commit 7ad3c81240b366b99f29c4ac5f7c42173c91f38a, which enabled tests that were previously disabled on i686, and takes into account new tests with similar issues. While at it, selectively disable tests on aarch64 instead of disabling all tests. * gnu/packages/maths.scm (gsl)[arguments]: On i686 and aarch64, add #:phases.
* | Merge branch 'master' into core-updatesMarius Bakke2020-03-30
|\| | | | | | | | | | | | | | | | | | | | | Conflicts: gnu/packages/admin.scm gnu/packages/commencement.scm gnu/packages/guile.scm gnu/packages/linux.scm gnu/packages/package-management.scm gnu/packages/pulseaudio.scm gnu/packages/web.scm
| * gnu: z3: Fix build determinism.Jakub Kądziołka2020-03-29
| | | | | | | | | | * gnu/packages/maths.scm (z3)[arguments]: Add a phase to set PYTHONHASHSEED=0.
| * gnu: Remove more packages deprecated for over almost a year.Tobias Geerinckx-Rice2020-03-29
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/games.scm (armagetron-advanced) (cataclysm-dark-days-ahead, gnubackgammon, l-abbaye-des-morts) (the-battle-for-wesnoth, the-battle-for-wesnoth-server) (project-starfighter, kiki-the-nano-bot, fish-fillets-ng) (dungeon-crawl-stone-soup): Let's forget this ever happened. * gnu/packages/emacs-xyz.scm (geiser, paredit, git-modes/old-name) (magit, magit-svn, haskell-mode, emacs-emms-player-mpv, bbdb) (ert-runner, groovy-emacs-modes): Remove variable. * gnu/packages/engineering.scm (emacs-emms-player-simple-mpv) (emacs-evil-ediff, emacs-evil-mu4e, emacs-wgrep-helm, ao): Likewise. * gnu/packages/finance.scm (monero-core): Likewise. * gnu/packages/gnome.scm (dungeon-crawl-stone-soup-tiles) (tales-of-maj-eyal, battle-tanks, the-legend-of-edgar) (gnome-tweak-tool): Likewise. * gnu/packages/gnuzilla.scm (conkeror): Likewise. * gnu/packages/guile-xyz.scm (mcron2): Likewise. * gnu/packages/image.scm (pngcrunch): Likewise. * gnu/packages/linux.scm (eudev-with-hwdb): Likewise. * gnu/packages/maths.scm (qtoctave): Likewise. * gnu/packages/package-management.scm (guile2.0-guix): Likewise. * gnu/packages/php.scm (php-with-bcmath): Likewise. * gnu/packages/python-xyz.scm (python-kivy-next, python2-kivy-next): Likewise. * gnu/packages/video.scm (livestreamer): Likewise. * gnu/packages/virtualization.scm (lookingglass): Likewise. * gnu/packages/vulkan.scm (vulkan-icd-loader): Likewise. * gnu/packages/syndication.scm (newsbeuter): Likewise. (newsboat)[description]: Remove historical footnote.
| * Update email address and Savannah handle for Amin Bandali.Amin Bandali2020-03-28
| | | | | | | | | | | | | | * .mailmap, gnu/local.mk, gnu/packages/emacs-xyz.scm, gnu/packages/emacs.scm, gnu/packages/fonts.scm, gnu/packages/fpga.scm, gnu/packages/lean.scm, gnu/packages/maths.scm, gnu/packages/pulseaudio.scm: Update my email address. * build-aux/git-authenticate.scm: Update my Savannah handle.
| * gnu: armadillo: Fix typo in description.Nicolas Goaziou2020-03-28
| | | | | | | | * gnu/packages/maths.scm (armadillo): Fix spaces after "eg.".
* | Merge branch 'master' into core-updatesMarius Bakke2020-03-27
|\| | | | | | | | | | | | | | | | | | | | | | | Conflicts: gnu/packages/icu4c.scm gnu/packages/man.scm gnu/packages/python-xyz.scm guix/scripts/environment.scm guix/scripts/pack.scm guix/scripts/package.scm guix/scripts/pull.scm guix/store.scm
| * gnu: wxmaxima: Update to 20.03.1.Kei Kebreau2020-03-22
| | | | | | | | * gnu/packages/maths.scm (wxmaxima): Update to 20.03.1.
* | Merge branch 'master' into core-updatesMarius Bakke2020-03-21
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| * gnu: hdf-eos2: Use HTTPS home page.Tobias Geerinckx-Rice2020-03-21
| | | | | | | | * gnu/packages/maths.scm (hdf-eos2)[home-page]: Use HTTPS.
* | Merge branch 'master' into core-updatesMarius Bakke2020-03-18
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| * gnu: openlibm: Use HTTPS home page.Tobias Geerinckx-Rice2020-03-14
| | | | | | | | * gnu/packages/maths.scm (openlibm)[home-page]: Use HTTPS.
| * gnu: define dune-*-openmpi packagesFelix Gruber2020-03-14
| | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (dune-common-openmpi, dune-geometry-openmpi, dune-istl-openmpi, dune-typetree-openmpi, dune-uggrid-openmpi, dune-grid-openmpi, dune-alugrid-openmpi, dune-subgrid-openmpi, dune-localfunctions-openmpi, dune-functions-openmpi, dune-pdelab-openmpi): New variables. (add-openmpi-to-dune-package): New function to add openmpi to the inputs of a dune-* package and replace all dune-* packages in its input with the corresponding dune-*-openmpi package. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: dune-*: remove openmpi dependencyFelix Gruber2020-03-14
| | | | | | | | | | | | | | * gnu/packages/maths.scm (dune-*)[inputs]: Remove openmpi dependency. [arguments]: remove code to setup openmpi for tests. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* | Merge branch 'master' into core-updatesMarius Bakke2020-03-14
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| * gnu: suitesparse: Build with cmake-minimal.Marius Bakke2020-03-14
| | | | | | | | | | * gnu/packages/maths.scm (suitesparse)[native-inputs]: Change from CMAKE to CMAKE-MINIMAL.
| * gnu: dune-istl: Build with suitesparseFelix Gruber2020-03-12
| | | | | | | | | | | | | | * gnu/packages/maths.scm (dune-istl)[inputs]: Add suitesparse to build additional solvers in dune-istl. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: Add dune-subgridFelix Gruber2020-03-12
| | | | | | | | | | | | * gnu/packages/maths.scm (dune-subgrid): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: Add dune-uggrid.Felix Gruber2020-03-12
| | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (dune-uggrid): New variable. (dune-grid)[propagated-inputs]: Add dune-uggrid dependency, so that the UGGrid class in dune-grid can be used by packages that have dune-grid as input. (dune-functions)[arguments]: Enable tests that previously weren't built as they require dune-uggrid. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: dune-*: set up MPI for testsFelix Gruber2020-03-12
| | | | | | | | | | | | | | | | * gnu/packages/maths.scm (dune-common, dune-grid, dune-istl, dune-alugrid): [arguments]: correctly set up MPI instead of disabling tests that require MPI. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* | Merge branch 'master' into core-updatesMarius Bakke2020-03-10
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| * gnu: speedcrunch: Use HTTPS home page.Tobias Geerinckx-Rice2020-03-09
| | | | | | | | * gnu/packages/maths.scm (speedcrunch)[home-page]: Use HTTPS.
| * gnu: openblas: Use HTTPS home page.Tobias Geerinckx-Rice2020-03-07
| | | | | | | | * gnu/packages/maths.scm (openblas)[home-page]: Use HTTPS.
| * gnu: wxmaxima: Update to 20.02.4.Kei Kebreau2020-03-06
| | | | | | | | | | | | * gnu/packages/maths.scm (wxmaxima): Update to 20.02.4. [arguments]: Enable tests and set #:test-target to "test". [native-inputs]: Add xorg-server-for-tests.
| * gnu: SuiteSparse: Update to 5.7.1.Felix Gruber2020-03-04
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (suitesparse): Update to 5.7.1. [source]: The latest releases of SuiteSparse have only been published on GitHub. Fetch from git tag as GitHub releases page only contains autogenerated tarballs that guix lint complains about. Apply new patch for Mongoose's CMakeList.txt to find SuiteSparse_config. [arguments]: Add CMake flags used by new components GraphBLAS and Mongoose. [native-inputs]: Add CMake and m4 needed to build GraphBLAS and Mongoose. * gnu/packages/patches/suitesparse-mongoose-cmake.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Leo Famulari <leo@famulari.name>
* | gnu: OpenBLAS: Update to 0.3.9.Marius Bakke2020-03-05
| | | | | | | | * gnu/packages/maths.scm (openblas): Update to 0.3.9.
* | Merge branch 'master' into core-updatesMarius Bakke2020-03-04
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