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* gnu: r-loo: Update to 2.3.1.Tobias Geerinckx-Rice2020-07-19
| | | | * gnu/packages/cran.scm (r-loo): Update to 2.3.1.
* gnu: Use HTTPS for github.com (and subdomains) home pages.Tobias Geerinckx-Rice2020-07-16
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/bioconductor.scm (r-qvalue)[home-page]: Use HTTPS and follow permanent redirection. * gnu/packages/check.scm (python-codecov, python-nosexcover) [home-page]: Likewise. * gnu/packages/cran.scm (r-ffbase, r-ggrepel, r-valr) [home-page]: Likewise. * gnu/packages/crates-io.scm (rust-block-0.1, rust-dispatch-0.1) (rust-objc-0.2, rust-objc-exception-0.1) (rust-objc-foundation-0.1, rust-objc-id-0.1, rust-objc-test-utils-0.0) (rust-onig-5.0, rust-onig-sys-69.2, rust-vergen-3.1) [home-page]: Likewise. * gnu/packages/finance.scm (ledger-agent, keepkey-agent) [home-page]: Likewise. * gnu/packages/haskell-check.scm (ghc-tasty-expected-failure) [home-page]: Likewise. * gnu/packages/haskell-web.scm (ghc-bsb-http-chunked, ghc-warp) (ghc-warp-tls)[home-page]: Likewise. * gnu/packages/haskell-xyz.scm (ghc-configurator, ghc-hasktags) (ghc-linear, ghc-newtype-generics, ghc-retry, ghc-xdg-basedir) (ghc-pretty-show)[home-page]: Likewise. * gnu/packages/java.scm (java-javax-inject)[home-page]: Likewise. * gnu/packages/libffi.scm (ruby-ffi)[home-page]: Likewise. * gnu/packages/linux.scm (procenv)[home-page]: Likewise. * gnu/packages/python-web.scm (python-aiodns, python-flask-htpasswd) (python-pycares)[home-page]: Likewise. * gnu/packages/python-xyz.scm (python-progressbar33, python-whatever) (python-funcy)[home-page]: Likewise. * gnu/packages/ruby.scm (ruby-rubyzip, ruby-spinach, ruby-gherkin-ruby) (ruby-code-statistics, ruby-colorize, ruby-wwtd)[home-page]: Likewise.
* gnu: r-brms: Update to 2.13.3.Ricardo Wurmus2020-07-16
| | | | * gnu/packages/cran.scm (r-brms): Update to 2.13.3.
* gnu: r-gamlss: Update to 5.1-7.Ricardo Wurmus2020-07-16
| | | | * gnu/packages/cran.scm (r-gamlss): Update to 5.1-7.
* gnu: r-gamlss-dist: Update to 5.1-7.Ricardo Wurmus2020-07-16
| | | | * gnu/packages/cran.scm (r-gamlss-dist): Update to 5.1-7.
* gnu: r-pillar: Update to 1.4.6.Ricardo Wurmus2020-07-16
| | | | | * gnu/packages/cran.scm (r-pillar): Update to 1.4.6. [propagated-inputs]: Add r-ellipsis and r-lifecycle.
* gnu: r-mice: Update to 3.10.0.Ricardo Wurmus2020-07-16
| | | | | * gnu/packages/cran.scm (r-mice): Update to 3.10.0. [propagated-inputs]: Add r-generics.
* gnu: r-broom: Update to 0.7.0.Ricardo Wurmus2020-07-16
| | | | | | * gnu/packages/cran.scm (r-broom): Update to 0.7.0. [propagated-inputs]: Remove r-nlme and r-reshape2; add r-ellipsis, r-glue, and r-rlang.
* gnu: Add r-conquer.Ricardo Wurmus2020-07-16
| | | | * gnu/packages/cran.scm (r-conquer): New variable.
* gnu: r-rstan: Update to 2.21.1.Ricardo Wurmus2020-07-16
| | | | | | * gnu/packages/cran.scm (r-rstan): Update to 2.21.1. [propagated-inputs]: Add r-rcppparallel and r-v8. [native-inputs]: Add r-knitr.
* gnu: r-loo: Update to 2.3.0.Ricardo Wurmus2020-07-16
| | | | | * gnu/packages/cran.scm (r-loo): Update to 2.3.0. [native-inputs]: Add r-knitr.
* gnu: r-rstantools: Update to 2.1.1.Ricardo Wurmus2020-07-16
| | | | | | * gnu/packages/cran.scm (r-rstantools): Update to 2.1.1. [propagated-inputs]: Add r-rcppparallel. [native-inputs]: Add r-knitr.
* gnu: r-iheatmapr: Update to 0.5.0.Ricardo Wurmus2020-07-16
| | | | | | * gnu/packages/cran.scm (r-iheatmapr): Update to 0.5.0. [propagated-inputs]: Remove r-plyr and r-s4vectors. [native-inputs]: Add r-knitr.
* gnu: r-quanteda: Update to 2.1.0.Ricardo Wurmus2020-07-16
| | | | | * gnu/packages/cran.scm (r-quanteda): Update to 2.1.0. [propagated-inputs]: Add r-digest.
* gnu: r-nonnest2: Update to 0.5-5.Ricardo Wurmus2020-07-16
| | | | * gnu/packages/cran.scm (r-nonnest2): Update to 0.5-5.
* gnu: r-future: Update to 1.18.0.Ricardo Wurmus2020-07-16
| | | | * gnu/packages/cran.scm (r-future): Update to 1.18.0.
* gnu: r-doby: Update to 4.6.7.Ricardo Wurmus2020-07-16
| | | | | * gnu/packages/cran.scm (r-doby): Update to 4.6.7. [propagated-inputs]: Add r-dplyr and r-ggplot2.
* gnu: r-cubature: Update to 2.0.4.1.Ricardo Wurmus2020-07-16
| | | | | * gnu/packages/cran.scm (r-cubature): Update to 2.0.4.1. [native-inputs]: Add r-knitr.
* gnu: r-getoptlong: Update to 1.0.2.Ricardo Wurmus2020-07-16
| | | | * gnu/packages/cran.scm (r-getoptlong): Update to 1.0.2.
* gnu: r-rcpp: Update to 1.0.5.Ricardo Wurmus2020-07-16
| | | | * gnu/packages/cran.scm (r-rcpp): Update to 1.0.5.
* gnu: Add r-rselenium.Peter Lo2020-07-13
| | | | | | * gnu/packages/cran.scm (r-rselenium): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add r-wdman.Peter Lo2020-07-13
| | | | | | * gnu/packages/cran.scm (r-wdman): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add r-binman.Peter Lo2020-07-13
| | | | | | * gnu/packages/cran.scm (r-binman): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add r-semver.Peter Lo2020-07-13
| | | | | | * gnu/packages/cran.scm (r-semver): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add r-rismed.Peter Lo2020-07-13
| | | | | | * gnu/packages/cran.scm (r-rismed): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Remove ".git" from "https://github/…/….git".Ludovic Courtès2020-07-12
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Until now, 'lookup-origin' and thus 'lookup-origin-revision' in (guix swh) would sometimes return #f for these because the ".git" URLs are redirects to the non-".git" URLs. Consequently, 'guix lint -c archival' would keep saying "scheduled Software Heritage archival"; likewise, the fallback download code would fail. * gnu/packages/ada.scm, gnu/packages/admin.scm, gnu/packages/aidc.scm, gnu/packages/algebra.scm, gnu/packages/android.scm, gnu/packages/animation.scm, gnu/packages/arcan.scm, gnu/packages/assembly.scm, gnu/packages/audio.scm, gnu/packages/authentication.scm, gnu/packages/avr.scm, gnu/packages/axoloti.scm, gnu/packages/backup.scm, gnu/packages/bash.scm, gnu/packages/benchmark.scm, gnu/packages/bioconductor.scm, gnu/packages/bioinformatics.scm, gnu/packages/bittorrent.scm, gnu/packages/boost.scm, gnu/packages/build-tools.scm, gnu/packages/c.scm, gnu/packages/calendar.scm, gnu/packages/cdrom.scm, gnu/packages/check.scm, gnu/packages/chemistry.scm, gnu/packages/chez.scm, gnu/packages/clojure.scm, gnu/packages/code.scm, gnu/packages/compression.scm, gnu/packages/compton.scm, gnu/packages/coq.scm, gnu/packages/cpp.scm, gnu/packages/cran.scm, gnu/packages/crypto.scm, gnu/packages/curl.scm, gnu/packages/databases.scm, gnu/packages/datastructures.scm, gnu/packages/debug.scm, gnu/packages/disk.scm, gnu/packages/distributed.scm, gnu/packages/django.scm, gnu/packages/dlang.scm, gnu/packages/dns.scm, gnu/packages/docker.scm, gnu/packages/education.scm, gnu/packages/efi.scm, gnu/packages/elixir.scm, gnu/packages/emacs-xyz.scm, gnu/packages/embedded.scm, gnu/packages/emulators.scm, gnu/packages/engineering.scm, gnu/packages/erlang.scm, gnu/packages/fabric-management.scm, gnu/packages/file-systems.scm, gnu/packages/finance.scm, gnu/packages/firmware.scm, gnu/packages/flashing-tools.scm, gnu/packages/fonts.scm, gnu/packages/fontutils.scm, gnu/packages/fpga.scm, gnu/packages/game-development.scm, gnu/packages/games.scm, gnu/packages/genealogy.scm, gnu/packages/genimage.scm, gnu/packages/geo.scm, gnu/packages/gimp.scm, gnu/packages/gl.scm, gnu/packages/gnome-xyz.scm, gnu/packages/gnome.scm, gnu/packages/gnuzilla.scm, gnu/packages/golang.scm, gnu/packages/gpodder.scm, gnu/packages/graph.scm, gnu/packages/graphics.scm, gnu/packages/graphviz.scm, gnu/packages/groff.scm, gnu/packages/groovy.scm, gnu/packages/gtk.scm, gnu/packages/guile-xyz.scm, gnu/packages/guile.scm, gnu/packages/hardware.scm, gnu/packages/haskell-apps.scm, gnu/packages/haskell-xyz.scm, gnu/packages/hexedit.scm, gnu/packages/i2p.scm, gnu/packages/ibus.scm, gnu/packages/image-processing.scm, gnu/packages/image-viewers.scm, gnu/packages/image.scm, gnu/packages/ipfs.scm, gnu/packages/java-graphics.scm, gnu/packages/java-maths.scm, gnu/packages/java.scm, gnu/packages/javascript.scm, gnu/packages/jrnl.scm, gnu/packages/julia.scm, gnu/packages/jupyter.scm, gnu/packages/kodi.scm, gnu/packages/language.scm, gnu/packages/lego.scm, gnu/packages/less.scm, gnu/packages/libusb.scm, gnu/packages/linux.scm, gnu/packages/lirc.scm, gnu/packages/lisp-xyz.scm, gnu/packages/llvm.scm, gnu/packages/logging.scm, gnu/packages/lolcode.scm, gnu/packages/lua.scm, gnu/packages/lxde.scm, gnu/packages/lxqt.scm, gnu/packages/machine-learning.scm, gnu/packages/mail.scm, gnu/packages/markup.scm, gnu/packages/maths.scm, gnu/packages/maven.scm, gnu/packages/mes.scm, gnu/packages/messaging.scm, gnu/packages/monitoring.scm, gnu/packages/mpd.scm, gnu/packages/music.scm, gnu/packages/networking.scm, gnu/packages/node-xyz.scm, gnu/packages/ocaml.scm, gnu/packages/ocr.scm, gnu/packages/onc-rpc.scm, gnu/packages/opencl.scm, gnu/packages/opencog.scm, gnu/packages/pantheon.scm, gnu/packages/password-utils.scm, gnu/packages/patchutils.scm, gnu/packages/pdf.scm, gnu/packages/perl6.scm, gnu/packages/phabricator.scm, gnu/packages/popt.scm, gnu/packages/printers.scm, gnu/packages/prolog.scm, gnu/packages/protobuf.scm, gnu/packages/pulseaudio.scm, gnu/packages/python-crypto.scm, gnu/packages/python-web.scm, gnu/packages/python-xyz.scm, gnu/packages/qt.scm, gnu/packages/radio.scm, gnu/packages/rails.scm, gnu/packages/rdf.scm, gnu/packages/rednotebook.scm, gnu/packages/rpc.scm, gnu/packages/rsync.scm, gnu/packages/ruby.scm, gnu/packages/rust.scm, gnu/packages/scheme.scm, gnu/packages/screen.scm, gnu/packages/security-token.scm, gnu/packages/selinux.scm, gnu/packages/serialization.scm, gnu/packages/shells.scm, gnu/packages/shellutils.scm, gnu/packages/simh.scm, gnu/packages/sml.scm, gnu/packages/ssh.scm, gnu/packages/statistics.scm, gnu/packages/stenography.scm, gnu/packages/sync.scm, gnu/packages/syncthing.scm, gnu/packages/synergy.scm, gnu/packages/telephony.scm, gnu/packages/terminals.scm, gnu/packages/tex.scm, gnu/packages/texinfo.scm, gnu/packages/text-editors.scm, gnu/packages/textutils.scm, gnu/packages/time.scm, gnu/packages/tmux.scm, gnu/packages/tor.scm, gnu/packages/toys.scm, gnu/packages/version-control.scm, gnu/packages/video.scm, gnu/packages/vim.scm, gnu/packages/virtualization.scm, gnu/packages/vlang.scm, gnu/packages/vnc.scm, gnu/packages/vpn.scm, gnu/packages/web-browsers.scm, gnu/packages/web.scm, gnu/packages/wireservice.scm, gnu/packages/wm.scm, gnu/packages/wxwidgets.scm, gnu/packages/xdisorg.scm, gnu/packages/xml.scm, gnu/packages/xorg.scm, tests/lint.scm: Remove trailing ".git" from 'git-reference' URL.
* gnu: r-processx: Update to 3.4.3.Tobias Geerinckx-Rice2020-07-11
| | | | * gnu/packages/cran.scm (r-processx): Update to 3.4.3.
* gnu: r-htmltable: Update to 2.0.1.Tobias Geerinckx-Rice2020-07-11
| | | | * gnu/packages/cran.scm (r-htmltable): Update to 2.0.1.
* gnu: r-rjava: Update to 0.9-13.Tanguy Le Carrour2020-07-08
| | | | | | * gnu/packages/cran.scm (r-rjava): Update to 0.9-13. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu: r-dalex: Update to 1.3.0.Ricardo Wurmus2020-07-04
| | | | * gnu/packages/cran.scm (r-dalex): Update to 1.3.0.
* gnu: r-spdata: Update to 0.3.8.Ricardo Wurmus2020-07-04
| | | | * gnu/packages/cran.scm (r-spdata): Update to 0.3.8.
* gnu: r-glmmtmb: Update to 1.0.2.1.Ricardo Wurmus2020-07-04
| | | | * gnu/packages/cran.scm (r-glmmtmb): Update to 1.0.2.1.
* gnu: r-abn: Update to 2.2.2.Ricardo Wurmus2020-07-04
| | | | * gnu/packages/cran.scm (r-abn): Update to 2.2.2.
* gnu: r-mda: Update to 0.5-2.Ricardo Wurmus2020-07-02
| | | | * gnu/packages/cran.scm (r-mda): Update to 0.5-2.
* gnu: r-ingredients: Update to 1.3.0.Ricardo Wurmus2020-07-02
| | | | * gnu/packages/cran.scm (r-ingredients): Update to 1.3.0.
* gnu: r-spdep: Update to 1.1-5.Ricardo Wurmus2020-07-02
| | | | | * gnu/packages/cran.scm (r-spdep): Update to 1.1-5. [native-inputs]: Add r-knitr.
* gnu: r-blockmodeling: Update to 1.0.0.Ricardo Wurmus2020-07-02
| | | | * gnu/packages/cran.scm (r-blockmodeling): Update to 1.0.0.
* gnu: r-future-apply: Update to 1.6.0.Ricardo Wurmus2020-07-02
| | | | * gnu/packages/cran.scm (r-future-apply): Update to 1.6.0.
* gnu: r-fs: Update to 1.4.2.Ricardo Wurmus2020-07-02
| | | | * gnu/packages/cran.scm (r-fs): Update to 1.4.2.
* gnu: r-rdpack: Update to 1.0.0.Ricardo Wurmus2020-07-02
| | | | * gnu/packages/cran.scm (r-rdpack): Update to 1.0.0.
* gnu: r-directlabels: Update to 2020.6.17.Ricardo Wurmus2020-06-28
| | | | | * gnu/packages/cran.scm (r-directlabels): Update to 2020.6.17. [native-inputs]: Add r-knitr.
* gnu: r-rgdal: Update to 1.5-12.Ricardo Wurmus2020-06-28
| | | | * gnu/packages/cran.scm (r-rgdal): Update to 1.5-12.
* gnu: r-flexdashboard: Update to 0.5.2.Ricardo Wurmus2020-06-28
| | | | | * gnu/packages/cran.scm (r-flexdashboard): Update to 0.5.2. [source]: Delete minified JavaScript files in a snippet.
* gnu: r-rcppparallel: Update to 5.0.2.Ricardo Wurmus2020-06-28
| | | | * gnu/packages/cran.scm (r-rcppparallel): Update to 5.0.2.
* gnu: r-emmeans: Update to 1.4.8.Ricardo Wurmus2020-06-28
| | | | * gnu/packages/cran.scm (r-emmeans): Update to 1.4.8.
* gnu: r-raster: Update to 3.3-7.Ricardo Wurmus2020-06-28
| | | | * gnu/packages/cran.scm (r-raster): Update to 3.3-7.
* gnu: r-sjlabelled: Update to 1.1.6.Ricardo Wurmus2020-06-28
| | | | * gnu/packages/cran.scm (r-sjlabelled): Update to 1.1.6.
* gnu: r-officer: Update to 0.3.12.Ricardo Wurmus2020-06-28
| | | | * gnu/packages/cran.scm (r-officer): Update to 0.3.12.
* gnu: r-ggpubr: Update to 0.4.0.Ricardo Wurmus2020-06-28
| | | | * gnu/packages/cran.scm (r-ggpubr): Update to 0.4.0.
* gnu: r-renv: Update to 0.11.0.Ricardo Wurmus2020-06-28
| | | | * gnu/packages/cran.scm (r-renv): Update to 0.11.0.
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