diff options
Diffstat (limited to 'gnu/packages/python-xyz.scm')
| -rw-r--r-- | gnu/packages/python-xyz.scm | 11 |
1 files changed, 5 insertions, 6 deletions
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 30645fc4a0..0accf918ee 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -9739,15 +9739,14 @@ Python style, together with a fast and comfortable execution environment.") ;; For cluster execution Snakemake will call Python. Since there is ;; no suitable GUIX_PYTHONPATH set, cluster execution will fail. We ;; fix this by calling the snakemake wrapper instead. - - ;; XXX: There is another instance of sys.executable on line 692, but - ;; it is not clear how to patch it. (add-after 'unpack 'call-wrapper-not-wrapped-snakemake (lambda* (#:key outputs #:allow-other-keys) (substitute* "snakemake/executors/__init__.py" - (("\\{sys.executable\\} -m snakemake") - (string-append (assoc-ref outputs "out") - "/bin/snakemake"))))) + (("self\\.get_python_executable\\(\\),") + "") + (("\"-m snakemake\"") + (string-append "\"" (assoc-ref outputs "out") + "/bin/snakemake" "\""))))) (replace 'check (lambda* (#:key tests? #:allow-other-keys) (when tests? |