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-rw-r--r--gnu/packages/cran.scm212
1 files changed, 144 insertions, 68 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 458b141f91..5bf37e3900 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -53,7 +53,7 @@
#:use-module (gnu packages gnome)
#:use-module (gnu packages graph)
#:use-module (gnu packages gtk)
- #:use-module (gnu packages haskell)
+ #:use-module (gnu packages haskell-xyz)
#:use-module (gnu packages icu4c)
#:use-module (gnu packages image)
#:use-module (gnu packages imagemagick)
@@ -166,14 +166,14 @@ objects.")
(define-public r-sys
(package
(name "r-sys")
- (version "3.2")
+ (version "3.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "sys" version))
(sha256
(base32
- "1k5vk5q9wa5sin0n226i05nymg469s24f6lx64yyhb7yc624j698"))))
+ "14wvy46i2iz9jn7lj3cvifmps932s3395wq681hniva0f8m7q8d6"))))
(build-system r-build-system)
(home-page "https://github.com/jeroen/sys")
(synopsis "Powerful and reliable tools for running system commands in R")
@@ -212,14 +212,14 @@ read a protected key.")
(define-public r-vegan
(package
(name "r-vegan")
- (version "2.5-5")
+ (version "2.5-6")
(source
(origin
(method url-fetch)
(uri (cran-uri "vegan" version))
(sha256
(base32
- "0wb90ng02gi13854bjq0b8a2vrknyhb0s0l1v3z38c4zy9k54sw7"))))
+ "0g60rgn1i7wqf9pf5m1yki1m45gcp7i5hmjic0ci0f6vng70mh5k"))))
(build-system r-build-system)
(native-inputs
`(("gfortran" ,gfortran)))
@@ -872,14 +872,14 @@ well as file saving is available.")
(define-public r-d3r
(package
(name "r-d3r")
- (version "0.8.6")
+ (version "0.8.7")
(source
(origin
(method url-fetch)
(uri (cran-uri "d3r" version))
(sha256
(base32
- "0vcmiyhd000xyl28k6rm7ba50x5sz5b2cpllxnq36q13qhdnqw6k"))))
+ "0xl3im76lp7pd5lhp8jfyqdm4j4zvjrx5a5fl81xv2cf7x3n4f2a"))))
(build-system r-build-system)
(arguments
`(#:modules ((guix build utils)
@@ -1122,14 +1122,14 @@ coordinates.")
(define-public r-rgooglemaps
(package
(name "r-rgooglemaps")
- (version "1.4.3")
+ (version "1.4.4")
(source
(origin
(method url-fetch)
(uri (cran-uri "RgoogleMaps" version))
(sha256
(base32
- "06ab3lg1rwm93hkshf1vxfm8mlxq5qsjan0wx43lhnrysay65js4"))))
+ "0sbklacc4jl5524ixhc11mh6smrzdz4l9pji6cn402i6zdn9z05x"))))
(properties `((upstream-name . "RgoogleMaps")))
(build-system r-build-system)
(propagated-inputs `(("r-png" ,r-png)))
@@ -1441,14 +1441,14 @@ processes. Most of its code is based on the @code{psutil} Python package.")
(define-public r-pkgbuild
(package
(name "r-pkgbuild")
- (version "1.0.4")
+ (version "1.0.5")
(source
(origin
(method url-fetch)
(uri (cran-uri "pkgbuild" version))
(sha256
(base32
- "0prvx91dha5pvd0k4jca2arkngvi6vnfs2indmiy3kwwzyjyyd19"))))
+ "0y4i85axwajrk67h3w6fiqfm6wxmhn3dr240w5l2nvqg3ahpxc8q"))))
(build-system r-build-system)
(propagated-inputs
`(("r-callr" ,r-callr)
@@ -1649,14 +1649,14 @@ validation and filtering on the values, making options invisible or private.")
(define-public r-circlize
(package
(name "r-circlize")
- (version "0.4.6")
+ (version "0.4.7")
(source
(origin
(method url-fetch)
(uri (cran-uri "circlize" version))
(sha256
(base32
- "1yjnb88pnzk5c1p0vjxykc7cr3394ln5axviqcf12ajibvy8rj6f"))))
+ "07y1bchkslpz2wl43yg5j5h1nl9z0i425a07jdmfd5avrynd8p3m"))))
(build-system r-build-system)
(propagated-inputs
`(("r-colorspace" ,r-colorspace)
@@ -2663,14 +2663,14 @@ Optimization problems by using the simplex algorithm.")
(define-public r-geometry
(package
(name "r-geometry")
- (version "0.4.2")
+ (version "0.4.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "geometry" version))
(sha256
(base32
- "0vq334115qi039vy198ggv1dsp6n1s6jwcm9ivipf5r8lbm287zz"))))
+ "0z4491mhfmrlbb8lazjvq55alrprx7k0abg2d39fj0lsj84cls1r"))))
(build-system r-build-system)
(propagated-inputs
`(("r-magic" ,r-magic)
@@ -3476,14 +3476,14 @@ of Eigenmatrices} (JADE).")
(define-public r-dtw
(package
(name "r-dtw")
- (version "1.20-1")
+ (version "1.21-3")
(source
(origin
(method url-fetch)
(uri (cran-uri "dtw" version))
(sha256
(base32
- "1w301xwizncy5r8v9rwwdxfshydgp3l1pnjla1fjn6n8lx3imjj3"))))
+ "02hyhx1sy5h3vzh9zixy18a7d47df4k5d0wyflcvlcbsbcl6p90s"))))
(build-system r-build-system)
(propagated-inputs `(("r-proxy" ,r-proxy)))
(home-page "http://dtw.r-forge.r-project.org/")
@@ -3765,14 +3765,14 @@ Markdown documents.")
(define-public r-seriation
(package
(name "r-seriation")
- (version "1.2-7")
+ (version "1.2-8")
(source
(origin
(method url-fetch)
(uri (cran-uri "seriation" version))
(sha256
(base32
- "0dbz5b5msy4fr2whhphyriqk1xc6305zpjq59rrwxyz3d7rzwpa6"))))
+ "1zbdxq0s5rc5v307b69fw9k52m0654ls7pf22lh35ggirig6lwsk"))))
(build-system r-build-system)
(propagated-inputs
`(("r-cluster" ,r-cluster)
@@ -3799,14 +3799,14 @@ iVAT).")
(define-public r-xfun
(package
(name "r-xfun")
- (version "0.8")
+ (version "0.9")
(source
(origin
(method url-fetch)
(uri (cran-uri "xfun" version))
(sha256
(base32
- "05jlbi5byqpw0fkhmmxqglnaxh9gwbcigx77kcpw1pkxnpwfry62"))))
+ "1c3wmy6s4ck821mwl7i2g8cxd31g30llbpivbgq21g1rxs4zwlyl"))))
(build-system r-build-system)
(home-page "https://github.com/yihui/xfun")
(synopsis "Miscellaneous functions")
@@ -4699,14 +4699,14 @@ systems.")
(define-public r-radiant-data
(package
(name "r-radiant-data")
- (version "1.0.0")
+ (version "1.0.6")
(source
(origin
(method url-fetch)
(uri (cran-uri "radiant.data" version))
(sha256
(base32
- "0b35jn4mcj10hqra18l8pi6s4pvj6fxipslbn6hkr4zza1z27gzw"))
+ "08x7zasxf429m021482p86lx3zc6dqz2mih0id8s34isg4gafapg"))
(modules '((guix build utils)))
(snippet
'(begin
@@ -5064,14 +5064,14 @@ evaluated by the @dfn{Akaike Information Criterion} (AIC).")
(define-public r-arules
(package
(name "r-arules")
- (version "1.6-3")
+ (version "1.6-4")
(source
(origin
(method url-fetch)
(uri (cran-uri "arules" version))
(sha256
(base32
- "0dimrq1pz449z0mz9m87nhm5bpc0v789bcc3lghhh97wwi5zah9y"))))
+ "003c5cd3xzq39h7c19px077ygm0n1v7k83icy5zzrnkagyds2p8n"))))
(build-system r-build-system)
(propagated-inputs
`(("r-matrix" ,r-matrix)))
@@ -5161,14 +5161,14 @@ misclassification probabilities of different models.")
(define-public r-zip
(package
(name "r-zip")
- (version "2.0.3")
+ (version "2.0.4")
(source
(origin
(method url-fetch)
(uri (cran-uri "zip" version))
(sha256
(base32
- "0zii05jg9v9ljd0wd67g9x4bhlmpmsy5dzd093sbnc5n3vjbi32a"))))
+ "1c02amk3pl6xir5jnbfiwiv2wvpkpbkkb1w71y6lf2yk7g3d0pdb"))))
(build-system r-build-system)
(home-page "https://github.com/gaborcsardi/zip")
(synopsis "Cross-platform Zip compression")
@@ -6921,14 +6921,14 @@ used to teach mathematics, statistics, computation and modeling.")
(define-public r-raster
(package
(name "r-raster")
- (version "2.9-23")
+ (version "3.0-2")
(source
(origin
(method url-fetch)
(uri (cran-uri "raster" version))
(sha256
(base32
- "1brqigic8ygr223bp2hgk5qjz3q03r4sfglrv4an0ghy7fgfralh"))))
+ "0z4qh3ag1iyly4zjvzi3x2namkndkqn3cjb3ac22xd11sq5gdgiz"))))
(build-system r-build-system)
(propagated-inputs
`(("r-rcpp" ,r-rcpp)
@@ -7489,14 +7489,14 @@ multiple-imputation datasets.")
(define-public r-magick
(package
(name "r-magick")
- (version "2.1")
+ (version "2.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "magick" version))
(sha256
(base32
- "1pz71maz05gx4ds1wfw0alggc8nn2w75lj12dg1zr72s3kybhkzg"))))
+ "1xh5mhaks3wk1iwqs9d3lnbfv121lc1yz5fqdzk5il9ppr831l85"))))
(build-system r-build-system)
(inputs
`(("imagemagick" ,imagemagick)
@@ -7927,14 +7927,14 @@ Cohen (1988).")
(define-public r-libcoin
(package
(name "r-libcoin")
- (version "1.0-4")
+ (version "1.0-5")
(source
(origin
(method url-fetch)
(uri (cran-uri "libcoin" version))
(sha256
(base32
- "1i893ij9vkmc4y721npw1s3prmmcs2da5vf3ajm0j8ccmfhbmp4i"))))
+ "1cm9x1dlg9f7fh7n5nw3x4a7rl88c7ylrlc8x3rx4mq5w1j42x0a"))))
(build-system r-build-system)
(propagated-inputs `(("r-mvtnorm" ,r-mvtnorm)))
(home-page "https://cran.r-project.org/web/packages/libcoin")
@@ -7947,14 +7947,14 @@ and permutation inference in the framework of Strasser and Weber (1999).")
(define-public r-coin
(package
(name "r-coin")
- (version "1.3-0")
+ (version "1.3-1")
(source
(origin
(method url-fetch)
(uri (cran-uri "coin" version))
(sha256
(base32
- "1y0yl4mjaxca0jqz53sv1gcpdg89m099rq61iszxvpx7w0vvpkmd"))))
+ "0qi03fyqw42a2vnqcia5l2m1mzyarj2q1iblknx9n19bdsd53qjx"))))
(build-system r-build-system)
(propagated-inputs
`(("r-libcoin" ,r-libcoin)
@@ -8518,14 +8518,14 @@ ways.")
(define-public r-summarytools
(package
(name "r-summarytools")
- (version "0.9.3")
+ (version "0.9.4")
(source
(origin
(method url-fetch)
(uri (cran-uri "summarytools" version))
(sha256
(base32
- "1wfbkgvicaic37zgpr6zcm4a58yx43p59h0sqggdj44ncqs7147f"))))
+ "1n695baz56mg4f13xjjadfq0xalw5xsn6xicil0yap5hgi8fsr3a"))))
(build-system r-build-system)
(propagated-inputs
`(("r-checkmate" ,r-checkmate)
@@ -8696,14 +8696,14 @@ analysing multivariate abundance data in community ecology.")
(define-public r-afex
(package
(name "r-afex")
- (version "0.24-1")
+ (version "0.25-1")
(source
(origin
(method url-fetch)
(uri (cran-uri "afex" version))
(sha256
(base32
- "14w7kcwr5hxmjcjmdm5ia9ka3bw1nl18pxlm1vpw62nmvicn3455"))))
+ "12n020y7rjm7402940gkqxa5j901p093f381i23p66fa3fyrshkf"))))
(build-system r-build-system)
(propagated-inputs
`(("r-car" ,r-car)
@@ -8930,14 +8930,14 @@ Bioconductor packages.")
(define-public r-rgl
(package
(name "r-rgl")
- (version "0.100.26")
+ (version "0.100.30")
(source
(origin
(method url-fetch)
(uri (cran-uri "rgl" version))
(sha256
(base32
- "0h77akviwjd86j2qyx326xynbmwhypd6ydprzlwqnidd4ckrr271"))))
+ "0rzqzskcwf2ah4yr62x5rjwf7yh90d43h39gk7jmfc5lc08zaxc5"))))
(build-system r-build-system)
(native-inputs
`(("pkg-config" ,pkg-config)))
@@ -9325,6 +9325,51 @@ in-memory raw vectors.")
;; Either of these two license versions.
(license (list license:gpl2 license:gpl3))))
+(define-public r-nlp
+ (package
+ (name "r-nlp")
+ (version "0.2-0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "NLP" version))
+ (sha256
+ (base32
+ "0xbhkrnxcbf322jfw31xcn4y2gnk5y7ccq1bz4h3prf44h0whr7w"))))
+ (properties `((upstream-name . "NLP")))
+ (build-system r-build-system)
+ (home-page "https://cran.r-project.org/web/packages/NLP/")
+ (synopsis "Natural language processing infrastructure")
+ (description
+ "This package provides basic classes and methods for Natural Language
+Processing.")
+ (license license:gpl3)))
+
+(define-public r-tm
+ (package
+ (name "r-tm")
+ (version "0.7-6")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "tm" version))
+ (sha256
+ (base32
+ "0spv43kjbpxq3rdxx8ysgrncjyc35ydiwk7gp8n4sig45iqyz59r"))))
+ (properties `((upstream-name . "tm")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-bh" ,r-bh)
+ ("r-nlp" ,r-nlp)
+ ("r-rcpp" ,r-rcpp)
+ ("r-slam" ,r-slam)
+ ("r-xml2" ,r-xml2)))
+ (home-page "http://tm.r-forge.r-project.org/")
+ (synopsis "Text mining package")
+ (description
+ "This package provides a framework for text mining applications within R.")
+ (license license:gpl3)))
+
(define-public r-waveslim
(package
(name "r-waveslim")
@@ -9364,7 +9409,10 @@ pairs (Selesnick 2001, 2002).")
(build-system r-build-system)
(propagated-inputs
`(("r-rcolorbrewer" ,r-rcolorbrewer)
- ("r-rcpp" ,r-rcpp)))
+ ("r-rcpp" ,r-rcpp)
+ ;; The "tm" package is only "suggested" according to CRAN, but the
+ ;; wordcloud package cannot be loaded without it.
+ ("r-tm" ,r-tm)))
(home-page "https://cran.r-project.org/web/packages/wordcloud")
(synopsis "Word clouds")
(description
@@ -10749,14 +10797,14 @@ Differences with other sparse matrix packages are:
(define-public r-fields
(package
(name "r-fields")
- (version "9.8-3")
+ (version "9.8-6")
(source
(origin
(method url-fetch)
(uri (cran-uri "fields" version))
(sha256
(base32
- "1q9x68dczjym56v7x90x4x5br59vj3dww6w8v42zd3yl17h7c1h1"))))
+ "07x95vk1idjfzi5ikn0ijal754mssdmgr1p4nswmx9w3i5ndcqaz"))))
(build-system r-build-system)
(propagated-inputs
`(("r-maps" ,r-maps)
@@ -11786,14 +11834,14 @@ select colors to use in your R code.")
(define-public r-ggextra
(package
(name "r-ggextra")
- (version "0.8")
+ (version "0.9")
(source
(origin
(method url-fetch)
(uri (cran-uri "ggExtra" version))
(sha256
(base32
- "1m5zpn3l3p1y3d2692gyz50m63d58m2a3b7zb595kvcffdx2qr5b"))))
+ "18mbi6gblqmrsciad1d2c9ngllk6mayaqj43k40hjq9ydqnvjbgj"))))
(properties `((upstream-name . "ggExtra")))
(build-system r-build-system)
(propagated-inputs
@@ -11801,6 +11849,7 @@ select colors to use in your R code.")
("r-ggplot2" ,r-ggplot2)
("r-gtable" ,r-gtable)
("r-miniui" ,r-miniui)
+ ("r-r6" ,r-r6)
("r-scales" ,r-scales)
("r-shiny" ,r-shiny)
("r-shinyjs" ,r-shinyjs)))
@@ -11900,14 +11949,14 @@ probabilities from a standard bivariate normal CDF.")
(define-public r-lavaan
(package
(name "r-lavaan")
- (version "0.6-4")
+ (version "0.6-5")
(source
(origin
(method url-fetch)
(uri (cran-uri "lavaan" version))
(sha256
(base32
- "1zf0sxpms35rhq2syb7r3sshhc8kjvc3pv97dk9x0gf4xl7pck4g"))))
+ "04kvsh2m6mnzlhv83phr3hjzy4sx1ck6f7dgsm7xb8cs84dnxszy"))))
(build-system r-build-system)
(propagated-inputs
`(("r-mass" ,r-mass)
@@ -12189,14 +12238,14 @@ network.")
(define-public r-apcluster
(package
(name "r-apcluster")
- (version "1.4.7")
+ (version "1.4.8")
(source
(origin
(method url-fetch)
(uri (cran-uri "apcluster" version))
(sha256
(base32
- "188hdfmwjjx3aic599nwmkzjqm9j9jighi5bly6qd43c1vj6ih2s"))))
+ "0lzf2jqm56i74wif6x5sw3j0w2qc4sni49zq2fgbl89b7lwkvchj"))))
(build-system r-build-system)
(propagated-inputs
`(("r-matrix" ,r-matrix)
@@ -12347,17 +12396,17 @@ extensions.")
(define-public r-wgaim
(package
(name "r-wgaim")
- (version "1.4-11")
+ (version "2.0-0")
(source
(origin
(method url-fetch)
(uri (cran-uri "wgaim" version))
(sha256
(base32
- "1jjyp100dcjjczp61xlvhmy48ynniqcys535vzbgswhr7fvijymg"))))
+ "0wnb10vibgq8h1ly6lq8kzymf30vx0j0g8fc2zidblbvwag9ka1g"))))
(build-system r-build-system)
(propagated-inputs
- `(("r-lattice" ,r-lattice)
+ `(("r-ggplot2" ,r-ggplot2)
("r-qtl" ,r-qtl)))
(home-page "https://cran.r-project.org/web/packages/wgaim")
(synopsis "Whole genome average interval mapping for QTL detection")
@@ -12566,14 +12615,14 @@ utilities for sequence data management under the ACNUC system.")
(define-public r-units
(package
(name "r-units")
- (version "0.6-3")
+ (version "0.6-4")
(source
(origin
(method url-fetch)
(uri (cran-uri "units" version))
(sha256
(base32
- "0kx640h60s3zzkdr302asap7diap6vri6d41scnx507yvkcqiph3"))))
+ "1jz0mzd78sdfxkhqw041ji50hmhjk2ha55i31yjvz35nsw30lwi5"))))
(build-system r-build-system)
(inputs
`(("udunits" ,udunits)))
@@ -13121,14 +13170,14 @@ exact test for Hardy-Weinberg equilibrium.")
(define-public r-tdthap
(package
(name "r-tdthap")
- (version "1.1-9")
+ (version "1.1-11")
(source
(origin
(method url-fetch)
(uri (cran-uri "tdthap" version))
(sha256
(base32
- "0y01x0hcf0rw06cpn4pk17b0shf4v2c9was7vfs0zhsbq8qcwx7r"))))
+ "15qlj2bivvz3pizd8dq34wczbkbxhzqh3cqp1ixkdkprlyvcxj5k"))))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/tdthap/")
(synopsis "TDT tests for extended haplotypes")
@@ -13164,13 +13213,13 @@ SELECT or UPDATE queries to an end-point.")
(define-public r-bookdown
(package
(name "r-bookdown")
- (version "0.12")
+ (version "0.13")
(source (origin
(method url-fetch)
(uri (cran-uri "bookdown" version))
(sha256
(base32
- "1c2v0rpa1rrpbx8yb66sfvrf4gf57f6a8x7ydjqqbkbwhxdlrsrq"))))
+ "15r9scgnq68hmfcfxvjk286hpbr825bib1d2kgh0lv3dgz2i2bg1"))))
(build-system r-build-system)
(propagated-inputs
`(("r-htmltools" ,r-htmltools)
@@ -13764,14 +13813,14 @@ sets of URLs.")
(define-public r-ggforce
(package
(name "r-ggforce")
- (version "0.3.0")
+ (version "0.3.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "ggforce" version))
(sha256
(base32
- "118qyzy8h9kkkdpjd09667gxgw7xy1kbc8r87pswh54ixn8hymwk"))))
+ "04926cqrda6psvy2nzkkw4czwyxdp7fnxg76byp14v12kgd72lm0"))))
(build-system r-build-system)
(propagated-inputs
`(("r-ggplot2" ,r-ggplot2)
@@ -14616,14 +14665,14 @@ engine (Salmon et al., 2011) as provided by the package @code{sitmo}.")
(define-public r-dalex
(package
(name "r-dalex")
- (version "0.4.4")
+ (version "0.4.7")
(source
(origin
(method url-fetch)
(uri (cran-uri "DALEX" version))
(sha256
(base32
- "04i17ni8g595jj8dxdfwr9vsxmdn2kkam90ab68vlwws3ywqjl6r"))))
+ "0iiwkf0pfdb90lf1xhv43qd32z3cjmkmf0ly9841n5lldkjazy3h"))))
(properties `((upstream-name . "DALEX")))
(build-system r-build-system)
(propagated-inputs `(("r-ggplot2" ,r-ggplot2)))
@@ -14642,14 +14691,14 @@ and model output.")
(define-public r-enrichr
(package
(name "r-enrichr")
- (version "2.0")
+ (version "2.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "enrichR" version))
(sha256
(base32
- "056m6hksfss29fj7zvlk7pbh8g3gq84kjh3240isrsnhp9m1h9iz"))))
+ "0ymhzs9d2wl0s9rvbqc1hqb78mlzwhlc7mmijpfqkm5r720pf6m1"))))
(properties `((upstream-name . "enrichR")))
(build-system r-build-system)
(propagated-inputs
@@ -14812,17 +14861,18 @@ easily.")
(define-public r-umap
(package
(name "r-umap")
- (version "0.2.2.0")
+ (version "0.2.3.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "umap" version))
(sha256
(base32
- "1s82w9gy1387h7cprjfbhp49l89zbmn3gc9s0wzqb1s73nza9n31"))))
+ "0rzz1s029cn1w1bf5va2pav2lg9j1mq97ibwcln39drvm67kj76d"))))
(build-system r-build-system)
(propagated-inputs
- `(("r-rcpp" ,r-rcpp)
+ `(("r-openssl" ,r-openssl)
+ ("r-rcpp" ,r-rcpp)
("r-reticulate" ,r-reticulate)
("r-rspectra" ,r-rspectra)))
(home-page "https://github.com/tkonopka/umap")
@@ -14993,6 +15043,32 @@ radius searches and @code{bd} as well as @code{kd} trees. The distance is
computed using the L1 (Manhattan, taxicab) metric.")
(license license:gpl3+)))
+(define-public r-leiden
+ (package
+ (name "r-leiden")
+ (version "0.3.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "leiden" version))
+ (sha256
+ (base32
+ "19gq27zin4gf4sh7h24gyq3f8jjir20n2l36a7pk1pbzcr4ixyhp"))))
+ (properties `((upstream-name . "leiden")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-igraph" ,r-igraph)
+ ("r-matrix" ,r-matrix)
+ ("r-reticulate" ,r-reticulate)))
+ (home-page "https://github.com/TomKellyGenetics/leiden")
+ (synopsis "R implementation of Leiden clustering algorithm")
+ (description
+ "This package implements the Python @code{leidenalg} module to be called
+in R. It enables clustering using the Leiden algorithm for partitioning a
+graph into communities. See also Traag et al (2018) \"From Louvain to Leiden:
+guaranteeing well-connected communities.\" <arXiv:1810.08473>.")
+ (license license:gpl3)))
+
(define-public r-patchwork
;; There has been no public release yet.
(let ((commit "fd7958bae3e7a1e30237c751952e412a0a1d1242")
generated by cgit v1.2.3 (git 2.45.0) at 2024-06-13 08:03:19 +0000