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| -rw-r--r-- | gnu/packages/graph.scm | 9 |
1 files changed, 9 insertions, 0 deletions
diff --git a/gnu/packages/graph.scm b/gnu/packages/graph.scm index 8be720215e..115fe20b52 100644 --- a/gnu/packages/graph.scm +++ b/gnu/packages/graph.scm @@ -447,6 +447,15 @@ large networks.") (list #:phases '(modify-phases %standard-phases + (add-after 'unpack 'patch-tests + (lambda _ + ;; The warning message has changed in numpy. + (substitute* "test/test_data.py" + (("\"A sparse matrix was passed, but.*array.\",") + "\"Sparse data was passed, but dense data is required. Use '.toarray()' to convert to a dense numpy array.\",") + ;; anndata prints a warning that causes the test to fail. + (("import warnings" m) + (string-append m "\nwarnings.filterwarnings(\"ignore\")"))))) (replace 'check (lambda* (#:key tests? #:allow-other-keys) (when tests? |