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| author | Ricardo Wurmus <rekado@elephly.net> | 2022-05-25 07:33:02 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-05-28 23:18:42 +0200 |
| commit | 43e82253c1a0c5608bb97815778ffc19ad4c85b8 (patch) | |
| tree | c212a1471b54a3ae53542f0eee2c07313724fd4b /gnu/packages/statistics.scm | |
| parent | 0542905a2c5cb4f645399e19c2a4924dc757057e (diff) | |
| download | guix-patches-43e82253c1a0c5608bb97815778ffc19ad4c85b8.tar guix-patches-43e82253c1a0c5608bb97815778ffc19ad4c85b8.tar.gz | |
gnu: r-with-tests: Update to 4.2.0.
* gnu/packages/statistics.scm (r-with-tests): Update to 4.2.0.
[arguments]: Add phase 'patch-tests; add phase 'set-home.
Diffstat (limited to 'gnu/packages/statistics.scm')
| -rw-r--r-- | gnu/packages/statistics.scm | 17 |
1 files changed, 15 insertions, 2 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index aad329400f..67f169661f 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -203,7 +203,7 @@ This package also provides @command{xls2csv} to export Excel files to CSV.") (define r-with-tests (package (name "r-with-tests") - (version "4.1.3") + (version "4.2.0") (source (origin (method url-fetch) (uri (string-append "mirror://cran/src/base/R-" @@ -211,7 +211,7 @@ This package also provides @command{xls2csv} to export Excel files to CSV.") version ".tar.gz")) (sha256 (base32 - "1mpy4sar1amx5ai9rqr9s0nw8p65iqfrqbm5n9h402b17hrmpzqm")))) + "123l17sv3smh5cz0vrjxjj8jf81bb860kah6iww9bl3skdqvgsiq")))) (build-system gnu-build-system) (arguments `(#:disallowed-references (,tzdata-for-tests) @@ -237,6 +237,16 @@ This package also provides @command{xls2csv} to export Excel files to CSV.") (("uname") uname-bin)) (substitute* "src/unix/sys-std.c" (("rm -Rf ") (string-append rm-bin " -Rf ")))))) + (add-after 'unpack 'patch-tests + (lambda _ + ;; This is needed because R is run during the check phase and + ;; /bin/sh doesn't exist in the build container. + (substitute* "src/unix/sys-unix.c" + (("\"/bin/sh\"") + (string-append "\"" (which "sh") "\""))) + ;; This test fails because line numbers are off by two. + (substitute* "tests/reg-packages.R" + (("8 <= print" m) (string-append "## " m))))) (add-after 'unpack 'build-reproducibly (lambda _ ;; The documentation contains time stamps to demonstrate @@ -315,6 +325,9 @@ as.POSIXct(if (\"\" != Sys.getenv(\"SOURCE_DATE_EPOCH\")) {\ (setenv "TZDIR" (search-input-directory inputs "share/zoneinfo")))) + (add-before 'check 'set-home + ;; Some tests require that HOME be set. + (lambda _ (setenv "HOME" "/tmp"))) (add-after 'build 'make-info (lambda _ (invoke "make" "info"))) (add-after 'build 'install-info |