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| author | Efraim Flashner <efraim@flashner.co.il> | 2021-12-22 18:27:20 +0200 |
|---|---|---|
| committer | Efraim Flashner <efraim@flashner.co.il> | 2021-12-22 21:17:19 +0200 |
| commit | e8c1562599c7ebee8b7b228237fb0d75d4472a61 (patch) | |
| tree | 799ceb4ff8ab1e8b18bae18ba5162bb5a970fc38 /gnu/packages/python-science.scm | |
| parent | 46143878074b1935b653d9f44f408ac04fc71f70 (diff) | |
| download | guix-patches-e8c1562599c7ebee8b7b228237fb0d75d4472a61.tar guix-patches-e8c1562599c7ebee8b7b228237fb0d75d4472a61.tar.gz | |
gnu: python-scipy: Update to 1.7.3.
* gnu/packages/python-science.scm (python-scipy): Update to 1.7.3.
[native-inputs]: Add python-pydata-sphinx-theme, python-sphinx-panels.
[arguments]: Add phase to build without python-pythran. Remove
trailing #t from phases.
* gnu/packages/sphinx.scm (python-pydata-sphinx-theme)[native-inputs]:
Remove python-plotly.
Diffstat (limited to 'gnu/packages/python-science.scm')
| -rw-r--r-- | gnu/packages/python-science.scm | 21 |
1 files changed, 11 insertions, 10 deletions
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index 393e59896d..1311fbad0c 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -66,13 +66,13 @@ (define-public python-scipy (package (name "python-scipy") - (version "1.6.0") + (version "1.7.3") (source (origin (method url-fetch) (uri (pypi-uri "scipy" version)) (sha256 - (base32 "0rh5b1rwdcvvagld8vpxnpaibszy1skpx39a0fwzd5gx5pwcjvfb")))) + (base32 "1gxsnw6viz2j3sm8ak2a8l7fcn4b2zm3kzfm8w57xxyyrzx7an5b")))) (build-system python-build-system) (propagated-inputs (list python-numpy python-matplotlib python-pyparsing)) @@ -80,8 +80,10 @@ (list openblas pybind11)) (native-inputs (list python-cython + python-pydata-sphinx-theme python-pytest python-sphinx + python-sphinx-panels python-numpydoc gfortran perl @@ -90,11 +92,13 @@ (arguments `(#:phases (modify-phases %standard-phases + (add-after 'unpack 'disable-pythran + (lambda _ + (setenv "SCIPY_USE_PYTHRAN" "0"))) (add-before 'build 'change-home-dir (lambda _ ;; Change from /homeless-shelter to /tmp for write permission. - (setenv "HOME" "/tmp") - #t)) + (setenv "HOME" "/tmp"))) (add-after 'unpack 'disable-broken-tests (lambda _ (substitute* "scipy/sparse/linalg/dsolve/tests/test_linsolve.py" @@ -105,8 +109,7 @@ (substitute* "scipy/sparse/linalg/eigen/arpack/tests/test_arpack.py" (("^def test_parallel_threads\\(\\):" m) (string-append "@pytest.mark.skip(reason=\"Disabled by Guix\")\n" - m))) - #t)) + m))))) (add-before 'build 'configure-openblas (lambda* (#:key inputs #:allow-other-keys) (call-with-output-file "site.cfg" @@ -124,8 +127,7 @@ atlas_libs = openblas " (assoc-ref inputs "openblas") (assoc-ref inputs "openblas") - (assoc-ref inputs "openblas")))) - #t)) + (assoc-ref inputs "openblas")))))) (add-after 'install 'install-doc (lambda* (#:key inputs outputs #:allow-other-keys) (let* ((data (string-append (assoc-ref outputs "doc") "/share")) @@ -151,8 +153,7 @@ atlas_libs = openblas (let* ((dir (dirname file)) (tgt-dir (string-append html "/" dir))) (install-file file html))) - (find-files "." ".*"))))) - #t)) + (find-files "."))))))) ;; Tests can only be run after the library has been installed and not ;; within the source directory. (delete 'check) |