summaryrefslogtreecommitdiff
path: root/gnu/packages/python-science.scm
diff options
context:
space:
mode:
authorLudovic Courtès <ludo@gnu.org>2021-12-13 17:18:24 +0100
committerLudovic Courtès <ludo@gnu.org>2021-12-13 17:48:25 +0100
commit8394619baceb118df92e355377fd543bb1aa501a (patch)
tree504f07c2a9f88596a305b59ef45f941062426a52 /gnu/packages/python-science.scm
parentaca2defe0172868295941fd9f0e97886f6e9b2d4 (diff)
downloadguix-patches-8394619baceb118df92e355377fd543bb1aa501a.tar
guix-patches-8394619baceb118df92e355377fd543bb1aa501a.tar.gz
gnu: Simplify package inputs.
This commit was obtained by running: ./pre-inst-env guix style without any additional argument.
Diffstat (limited to 'gnu/packages/python-science.scm')
-rw-r--r--gnu/packages/python-science.scm278
1 files changed, 127 insertions, 151 deletions
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index eb1f8312cd..d23c56daa6 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -75,20 +75,17 @@
(base32 "0rh5b1rwdcvvagld8vpxnpaibszy1skpx39a0fwzd5gx5pwcjvfb"))))
(build-system python-build-system)
(propagated-inputs
- `(("python-numpy" ,python-numpy)
- ("python-matplotlib" ,python-matplotlib)
- ("python-pyparsing" ,python-pyparsing)))
+ (list python-numpy python-matplotlib python-pyparsing))
(inputs
- `(("openblas" ,openblas)
- ("pybind11" ,pybind11)))
+ (list openblas pybind11))
(native-inputs
- `(("python-cython" ,python-cython)
- ("python-pytest" ,python-pytest)
- ("python-sphinx" ,python-sphinx)
- ("python-numpydoc" ,python-numpydoc)
- ("gfortran" ,gfortran)
- ("perl" ,perl)
- ("which" ,which)))
+ (list python-cython
+ python-pytest
+ python-sphinx
+ python-numpydoc
+ gfortran
+ perl
+ which))
(outputs '("out" "doc"))
(arguments
`(#:phases
@@ -188,14 +185,14 @@ routines such as routines for numerical integration and optimization.")
(base32
"1cgvgin8fvckv96hjh3ikmwkra5rif51bdb75ifzf7xbil5iwcx4"))))
(native-inputs
- `(("python-cython" ,python2-cython)
- ("python-pytest" ,python2-pytest)
- ("python-sphinx" ,python2-sphinx)
- ("python-numpydoc" ,python2-numpydoc)
- ("gfortran" ,gfortran-7)
- ("gcc" ,gcc-7)
- ("perl" ,perl)
- ("which" ,which)))))
+ (list python2-cython
+ python2-pytest
+ python2-sphinx
+ python2-numpydoc
+ gfortran-7
+ gcc-7
+ perl
+ which))))
(define-public python2-weave
(package
@@ -218,9 +215,9 @@ routines such as routines for numerical integration and optimization.")
"--exclude"
"test_(user|incorrect_ownership|char_fail|obj_fail)"))))))
(propagated-inputs
- `(("python-numpy" ,python2-numpy)))
+ (list python2-numpy))
(native-inputs
- `(("python-nose" ,python2-nose)))
+ (list python2-nose))
(home-page "https://www.scipy.org/")
(synopsis "Tools for including C/C++ code within Python code")
(description "Weave is the stand-alone version of the obsolete Scipy
@@ -249,11 +246,9 @@ Cython.")
(invoke "nosetests" "-s" "-v" "skfuzzy")
#t)))))
(native-inputs
- `(("python-nose" ,python-nose)))
+ (list python-nose))
(propagated-inputs
- `(("python-networkx" ,python-networkx)
- ("python-numpy" ,python-numpy)
- ("python-scipy" ,python-scipy)))
+ (list python-networkx python-numpy python-scipy))
(home-page "https://github.com/scikit-fuzzy/scikit-fuzzy")
(synopsis "Fuzzy logic toolkit for SciPy")
(description
@@ -293,24 +288,24 @@ logic, also known as grey logic.")
;; NOTE: scikit-image has an optional dependency on python-pooch, however
;; propagating it would enable many more tests that require online data.
(propagated-inputs
- `(("python-cloudpickle" ,python-cloudpickle)
- ("python-dask" ,python-dask)
- ("python-imageio" ,python-imageio)
- ("python-matplotlib" ,python-matplotlib)
- ("python-networkx" ,python-networkx)
- ("python-numpy" ,python-numpy)
- ("python-pillow" ,python-pillow)
- ("python-pywavelets" ,python-pywavelets)
- ("python-scipy" ,python-scipy)
- ("python-tifffile" ,python-tifffile)))
+ (list python-cloudpickle
+ python-dask
+ python-imageio
+ python-matplotlib
+ python-networkx
+ python-numpy
+ python-pillow
+ python-pywavelets
+ python-scipy
+ python-tifffile))
(native-inputs
- `(("python-codecov" ,python-codecov)
- ("python-cython" ,python-cython)
- ("python-flake8" ,python-flake8)
- ("python-pytest" ,python-pytest)
- ("python-pytest-cov" ,python-pytest-cov)
- ("python-pytest-localserver" ,python-pytest-localserver)
- ("python-wheel" ,python-wheel)))
+ (list python-codecov
+ python-cython
+ python-flake8
+ python-pytest
+ python-pytest-cov
+ python-pytest-localserver
+ python-wheel))
(home-page "https://scikit-image.org/")
(synopsis "Image processing in Python")
(description
@@ -329,7 +324,7 @@ logic, also known as grey logic.")
(base32 "0dncp9i5b6afkg7f8mj9j0qzsp008b8v73yc0qkmizhpns7mvwvx"))))
(build-system python-build-system)
(propagated-inputs
- `(("python-numpy" ,python-numpy)))
+ (list python-numpy))
(home-page "https://github.com/brandon-rhodes/python-sgp4")
(synopsis "Track earth satellite TLE orbits using SGP4")
(description
@@ -394,26 +389,24 @@ of the SGP4 satellite tracking algorithm.")
" and not TestS3"
" and not s3"))))))))))
(propagated-inputs
- `(("python-jinja2" ,python-jinja2)
- ("python-numpy" ,python-numpy)
- ("python-openpyxl" ,python-openpyxl)
- ("python-pytz" ,python-pytz)
- ("python-dateutil" ,python-dateutil)
- ("python-xlrd" ,python-xlrd)))
+ (list python-jinja2
+ python-numpy
+ python-openpyxl
+ python-pytz
+ python-dateutil
+ python-xlrd))
(inputs
- `(("which" ,which)
- ("xclip" ,xclip)
- ("xsel" ,xsel)))
+ (list which xclip xsel))
(native-inputs
- `(("python-cython" ,python-cython)
- ("python-beautifulsoup4" ,python-beautifulsoup4)
- ("python-lxml" ,python-lxml)
- ("python-html5lib" ,python-html5lib)
- ("python-nose" ,python-nose)
- ("python-pytest" ,python-pytest)
- ("python-pytest-mock" ,python-pytest-mock)
- ;; Needed to test clipboard support.
- ("xorg-server" ,xorg-server-for-tests)))
+ (list python-cython
+ python-beautifulsoup4
+ python-lxml
+ python-html5lib
+ python-nose
+ python-pytest
+ python-pytest-mock
+ ;; Needed to test clipboard support.
+ xorg-server-for-tests))
(home-page "https://pandas.pydata.org")
(synopsis "Data structures for data analysis, time series, and statistics")
(description
@@ -508,21 +501,18 @@ doing practical, real world data analysis in Python.")
;; XXX: Due to the deleted tests above.
"not test_read_s3_jsonl"))))))))
(propagated-inputs
- `(("python-numpy" ,python2-numpy)
- ("python-openpyxl" ,python2-openpyxl)
- ("python-pytz" ,python2-pytz)
- ("python-dateutil" ,python2-dateutil)
- ("python-xlrd" ,python2-xlrd)))
+ (list python2-numpy python2-openpyxl python2-pytz python2-dateutil
+ python2-xlrd))
(inputs
- `(("which" ,which)))
+ (list which))
(native-inputs
- `(("python-cython" ,python2-cython)
- ("python-beautifulsoup4" ,python2-beautifulsoup4)
- ("python-lxml" ,python2-lxml)
- ("python-html5lib" ,python2-html5lib)
- ("python-nose" ,python2-nose)
- ("python-pytest" ,python2-pytest)
- ("python-pytest-mock" ,python2-pytest-mock))))))
+ (list python2-cython
+ python2-beautifulsoup4
+ python2-lxml
+ python2-html5lib
+ python2-nose
+ python2-pytest
+ python2-pytest-mock)))))
(define-public python-pyflow
(package
@@ -563,11 +553,9 @@ context of a task dependency graph. It has some similarities to make.")
(lambda _
(invoke "python" "setup.py" "pytest"))))))
(native-inputs
- `(("python-hypothesis" ,python-hypothesis)
- ("python-pytest" ,python-pytest)
- ("python-pytest-runner" ,python-pytest-runner)))
+ (list python-hypothesis python-pytest python-pytest-runner))
(propagated-inputs
- `(("python-numpy" ,python-numpy)))
+ (list python-numpy))
(home-page "https://github.com/pydata/bottleneck")
(synopsis "Fast NumPy array functions written in C")
(description
@@ -587,9 +575,7 @@ written in C.")
(base32 "1c1354a7b3g8slychjgyjxqdm8z40z9kviyl9n4g9kfpdg0p4d64"))))
(build-system python-build-system)
(propagated-inputs
- `(("python-matplotlib" ,python-matplotlib)
- ("python-numpy" ,python-numpy)
- ("python-scipy" ,python-scipy)))
+ (list python-matplotlib python-numpy python-scipy))
(home-page "https://github.com/janezd/baycomp")
(synopsis "Library for comparison of Bayesian classifiers")
(description
@@ -613,11 +599,9 @@ higher scores.")
"1yx8j66b7rn10m2l6gmn8yr9cn38pi5cj0x0wwpy4hdnhy6i7qv4"))))
(build-system python-build-system)
(native-inputs
- `(("python-setuptools-scm" ,python-setuptools-scm)
- ("python-pytest" ,python-pytest)))
+ (list python-setuptools-scm python-pytest))
(propagated-inputs
- `(("python-numpy" ,python-numpy)
- ("python-pandas" ,python-pandas)))
+ (list python-numpy python-pandas))
(arguments
`(#:phases
(modify-phases %standard-phases
@@ -649,8 +633,7 @@ and visualization with these data structures.")
"0syzy645mwcy7lfjwz6pc8f9p2vv1qk4limc8iina3l5nnf0rjyz"))))
(build-system python-build-system)
(propagated-inputs
- `(("python-msgpack" ,python-msgpack)
- ("python-numpy" ,python-numpy)))
+ (list python-msgpack python-numpy))
(home-page "https://github.com/lebedov/msgpack-numpy")
(synopsis
"Numpy data serialization using msgpack")
@@ -684,7 +667,7 @@ Python's native complex data types is also supported.")
(with-directory-excursion "ruffus/test"
(invoke "bash" "run_all_unit_tests3.cmd"))))))))
(native-inputs
- `(("python-pytest" ,python-pytest)))
+ (list python-pytest))
(home-page "http://www.ruffus.org.uk")
(synopsis "Light-weight computational pipeline management")
(description
@@ -705,11 +688,8 @@ automated with the minimum of fuss and the least effort.")
"1f8c2sylzr7lpjbyqxsqlp9xi8rj3d8c9hfh98x4jbb83zxc4026"))))
(build-system python-build-system)
(propagated-inputs
- `(("python-numpy" ,python-numpy)
- ("python-seaborn" ,python-seaborn)
- ("python-matplotlib" ,python-matplotlib)
- ("python-pandas" ,python-pandas)
- ("python-scipy" ,python-scipy)))
+ (list python-numpy python-seaborn python-matplotlib python-pandas
+ python-scipy))
(home-page
"https://github.com/webermarcolivier/statannot")
(synopsis "Add annotations to existing plots generated by seaborn")
@@ -742,11 +722,9 @@ annotations on an existing boxplots and barplots generated by seaborn.")
(add-installed-pythonpath inputs outputs)
(invoke "pytest" "-v" "--doctest-modules"))))))
(propagated-inputs
- `(("python-matplotlib" ,python-matplotlib)
- ("python-pandas" ,python-pandas)))
+ (list python-matplotlib python-pandas))
(native-inputs
- `(("python-pytest-runner" ,python-pytest-runner)
- ("python-pytest-cov" ,python-pytest-cov)))
+ (list python-pytest-runner python-pytest-cov))
(home-page "https://upsetplot.readthedocs.io")
(synopsis "Draw UpSet plots with Pandas and Matplotlib")
(description
@@ -790,7 +768,7 @@ readable.")
("pkgconfig" ,python-pkgconfig)
("matplotlib" ,python-matplotlib)))
(native-inputs ; for python-pkgconfig
- `(("pkg-config" ,pkg-config)))
+ (list pkg-config))
(propagated-inputs
`(("numpy" ,python-numpy)
("vtk" ,vtk)))
@@ -826,8 +804,7 @@ dependencies.")
"12g4av8gpl6l83yza3h97j3f2jblqv69frlidrvdq8ny2rc6awbq"))))
(build-system python-build-system)
(propagated-inputs
- `(("python-pandas" ,python-pandas)
- ("python-xarray" ,python-xarray)))
+ (list python-pandas python-xarray))
(home-page "https://github.com/Zsailer/pandas_flavor")
(synopsis "Write your own flavor of Pandas")
(description "Pandas 0.23 added a simple API for registering accessors
@@ -874,19 +851,18 @@ of Pandas
(when tests?
(invoke "pytest")))))))
(native-inputs
- `(("python-pytest" ,python-pytest)
- ("python-pytest-cov" ,python-pytest-cov)))
+ (list python-pytest python-pytest-cov))
(propagated-inputs
- `(("python-matplotlib" ,python-matplotlib)
- ("python-mpmath" ,python-mpmath)
- ("python-numpy" ,python-numpy)
- ("python-pandas" ,python-pandas)
- ("python-pandas-flavor" ,python-pandas-flavor)
- ("python-scikit-learn" ,python-scikit-learn)
- ("python-scipy" ,python-scipy)
- ("python-seaborn" ,python-seaborn)
- ("python-statsmodels" ,python-statsmodels)
- ("python-tabulate" ,python-tabulate)))
+ (list python-matplotlib
+ python-mpmath
+ python-numpy
+ python-pandas
+ python-pandas-flavor
+ python-scikit-learn
+ python-scipy
+ python-seaborn
+ python-statsmodels
+ python-tabulate))
(home-page "https://pingouin-stats.org/")
(synopsis "Statistical package for Python")
(description "Pingouin is a statistical package written in Python 3 and
@@ -964,21 +940,21 @@ and more
;; "AttributeError: module 'distributed.dashboard' has no attribute 'scheduler'"
" and not test_get_client_functions_spawn_clusters"))))))))
(propagated-inputs
- `(("python-click" ,python-click)
- ("python-cloudpickle" ,python-cloudpickle)
- ("python-cryptography" ,python-cryptography)
- ("python-dask" ,python-dask)
- ("python-msgpack" ,python-msgpack)
- ("python-psutil" ,python-psutil)
- ("python-pyyaml" ,python-pyyaml)
- ("python-setuptools" ,python-setuptools)
- ("python-sortedcontainers" ,python-sortedcontainers)
- ("python-tblib" ,python-tblib)
- ("python-toolz" ,python-toolz)
- ("python-tornado" ,python-tornado-6)
- ("python-zict" ,python-zict)))
+ (list python-click
+ python-cloudpickle
+ python-cryptography
+ python-dask
+ python-msgpack
+ python-psutil
+ python-pyyaml
+ python-setuptools
+ python-sortedcontainers
+ python-tblib
+ python-toolz
+ python-tornado-6
+ python-zict))
(native-inputs
- `(("python-pytest" ,python-pytest)))
+ (list python-pytest))
(home-page "https://distributed.dask.org")
(synopsis "Distributed scheduler for Dask")
(description "Dask.distributed is a lightweight library for distributed
@@ -1018,31 +994,31 @@ computing in Python. It extends both the @code{concurrent.futures} and
(invoke "python" "-m" "pytest"
"modin/pandas/test/test_concat.py")))))))
(propagated-inputs
- `(("python-cloudpickle" ,python-cloudpickle)
- ("python-dask" ,python-dask)
- ("python-distributed" ,python-distributed)
- ("python-numpy" ,python-numpy)
- ("python-packaging" ,python-packaging)
- ("python-pandas" ,python-pandas)))
+ (list python-cloudpickle
+ python-dask
+ python-distributed
+ python-numpy
+ python-packaging
+ python-pandas))
(native-inputs
- `(("python-coverage" ,python-coverage)
- ("python-jinja2" ,python-jinja2)
- ("python-lxml" ,python-lxml)
- ("python-matplotlib" ,python-matplotlib)
- ("python-msgpack" ,python-msgpack)
- ("python-openpyxl" ,python-openpyxl)
- ("python-psutil" ,python-psutil)
- ("python-pyarrow" ,python-pyarrow)
- ("python-pytest" ,python-pytest)
- ("python-pytest-benchmark" ,python-pytest-benchmark)
- ("python-pytest-cov" ,python-pytest-cov)
- ("python-pytest-xdist" ,python-pytest-xdist)
- ("python-scipy" ,python-scipy)
- ("python-sqlalchemy" ,python-sqlalchemy)
- ("python-tables" ,python-tables)
- ("python-tqdm" ,python-tqdm)
- ("python-xarray" ,python-xarray)
- ("python-xlrd" ,python-xlrd)))
+ (list python-coverage
+ python-jinja2
+ python-lxml
+ python-matplotlib
+ python-msgpack
+ python-openpyxl
+ python-psutil
+ python-pyarrow
+ python-pytest
+ python-pytest-benchmark
+ python-pytest-cov
+ python-pytest-xdist
+ python-scipy
+ python-sqlalchemy
+ python-tables
+ python-tqdm
+ python-xarray
+ python-xlrd))
(home-page "https://github.com/modin-project/modin")
(synopsis "Make your pandas code run faster")
(description