summaryrefslogtreecommitdiff
path: root/gnu/packages/julia.scm
diff options
context:
space:
mode:
authorMaxim Cournoyer <maxim.cournoyer@gmail.com>2021-11-23 14:42:26 -0500
committerMaxim Cournoyer <maxim.cournoyer@gmail.com>2021-11-24 01:02:36 -0500
commitfd3fb596e5c12c5ec187787ba281d27979c34eea (patch)
tree97ff9d28cab802cb691e2210176caa77fd825df7 /gnu/packages/julia.scm
parent57c54bff35875bd551ba3ceeed2fe480f6e11881 (diff)
downloadguix-patches-fd3fb596e5c12c5ec187787ba281d27979c34eea.tar
guix-patches-fd3fb596e5c12c5ec187787ba281d27979c34eea.tar.gz
gnu: julia: Use libgit2-1.1 and prepare for parallel tests.
Commit e0e2316420 updated libgit2 to version 1.3.0, but julia seems to only support 1.1.0 for now. * gnu/packages/julia.scm (julia): Delete trailing #t. [phases]{enable-parallel-tests}: New phase. [inputs]: Use libgit2-1.1. Reported-by: zimoun <zimon.toutoune@gmail.com>
Diffstat (limited to 'gnu/packages/julia.scm')
-rw-r--r--gnu/packages/julia.scm43
1 files changed, 22 insertions, 21 deletions
diff --git a/gnu/packages/julia.scm b/gnu/packages/julia.scm
index bdbfc692b1..aff7e1a66f 100644
--- a/gnu/packages/julia.scm
+++ b/gnu/packages/julia.scm
@@ -6,6 +6,7 @@
;;; Copyright © 2020 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2021 Jean-Baptiste Volatier <jbv@pm.me>
;;; Copyright © 2021 Simon Tournier <zimon.toutoune@gmail.com>
+;;; Copyright © 2021 Maxim Cournoyer <maxim.cournoyer@gmail.com>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -190,8 +191,7 @@ libraries. It is also a bit like @code{ldd} and @code{otool -L}.")
(("(install: .*) \\$\\(BUILDROOT\\)/doc/_build/html/en/index.html" _ line)
(string-append line "\n"))
(("src ui doc deps")
- "src ui deps"))
- #t))
+ "src ui deps"))))
(add-after 'unpack 'use-system-libwhich
(lambda* (#:key inputs #:allow-other-keys)
;; don't build it
@@ -200,15 +200,13 @@ libraries. It is also a bit like @code{ldd} and @code{otool -L}.")
;; call our version
(substitute* "base/Makefile"
(("\\$\\$\\(build_depsbindir\\)/libwhich")
- (search-input-file inputs "/bin/libwhich")))
- #t))
+ (search-input-file inputs "/bin/libwhich")))))
(add-after 'unpack 'change-number-of-precompile-statements
(lambda _
;; Remove nss-certs drops the number of statements below 1200,
;; causing the build to fail prematurely.
(substitute* "contrib/generate_precompile.jl"
- (("1200") "1100"))
- #t))
+ (("1200") "1100"))))
;; For some reason libquadmath is unavailable on this architecture.
;; https://github.com/JuliaLang/julia/issues/41613
,@(if (target-aarch64?)
@@ -250,8 +248,7 @@ libraries. It is also a bit like @code{ldd} and @code{otool -L}.")
(add-before 'build 'replace-default-shell
(lambda _
(substitute* "base/client.jl"
- (("/bin/sh") (which "sh")))
- #t))
+ (("/bin/sh") (which "sh")))))
(add-before 'build 'shared-objects-paths
(lambda* (#:key inputs #:allow-other-keys)
(let ((jlpath
@@ -315,8 +312,17 @@ libraries. It is also a bit like @code{ldd} and @code{otool -L}.")
(to "suitesparse" "libsuitesparseconfig"))
(((from "libumfpack")) (to "suitesparse" "libumfpack")))
(substitute* (jlpath "Zlib")
- (((from "libz")) (to "zlib" "libz"))))
- #t))
+ (((from "libz")) (to "zlib" "libz"))))))
+ (add-after 'unpack 'enable-parallel-tests
+ ;; FIXME: julia fails at networking in the container and falls back
+ ;; to a single worker, which causes the tests to not run in
+ ;; parallel (see: https://github.com/JuliaLang/julia/issues/43205).
+ (lambda* (#:key parallel-build? #:allow-other-keys)
+ (setenv "JULIA_CPU_THREADS" (if parallel-build?
+ (number->string (parallel-job-count))
+ "1"))
+ (format #t "JULIA_CPU_THREADS environment variable set to ~a~%"
+ (getenv "JULIA_CPU_THREADS"))))
(add-after 'unpack 'adjust-test-suite
(lambda* (#:key inputs #:allow-other-keys)
(let ((pcre2 (assoc-ref inputs "pcre2"))
@@ -339,8 +345,7 @@ libraries. It is also a bit like @code{ldd} and @code{otool -L}.")
(substitute* "stdlib/SuiteSparse_jll/test/runtests.jl"
(("5004") ,(string-replace-substring
(version-major+minor
- (package-version suitesparse)) "." "0")))
- #t)))
+ (package-version suitesparse)) "." "0"))))))
(add-before 'check 'disable-broken-tests
(lambda _
;; disabling REPL tests because they require a stdin
@@ -377,8 +382,7 @@ libraries. It is also a bit like @code{ldd} and @code{otool -L}.")
;(setenv "LC_ALL" "en_US.utf8")
(substitute* "test/cmdlineargs.jl"
(("test v\\[3") "test_broken v[3")
- (("test isempty\\(v\\[3") "test_broken isempty(v[3"))
- #t))
+ (("test isempty\\(v\\[3") "test_broken isempty(v[3"))))
(add-before 'install 'symlink-libraries
(lambda* (#:key inputs outputs #:allow-other-keys)
(let ((link
@@ -399,8 +403,7 @@ libraries. It is also a bit like @code{ldd} and @code{otool -L}.")
(link "zlib" "usr/lib/julia/" "libz\\.so")
(link "libunwind" "usr/lib/julia/" "libunwind\\.so")
(symlink (string-append (assoc-ref inputs "p7zip") "/bin/7z")
- "usr/libexec/7z")
- #t)))
+ "usr/libexec/7z"))))
(add-after 'install 'symlink-llvm-utf8proc
(lambda* (#:key inputs outputs #:allow-other-keys)
(let* ((out (assoc-ref outputs "out"))
@@ -415,8 +418,7 @@ libraries. It is also a bit like @code{ldd} and @code{otool -L}.")
(find-files (string-append (assoc-ref inputs pkgname)
"/lib") pred)))))
(link "llvm" "libLLVM-11jl\\.so")
- (link "utf8proc" "libutf8proc\\.so")
- #t)))
+ (link "utf8proc" "libutf8proc\\.so"))))
(add-after 'install 'make-wrapper
(lambda* (#:key inputs outputs #:allow-other-keys)
(let* ((out (assoc-ref outputs "out"))
@@ -427,8 +429,7 @@ libraries. It is also a bit like @code{ldd} and @code{otool -L}.")
`("JULIA_LOAD_PATH" ":" prefix
("" "$JULIA_LOAD_PATH"))
`("JULIA_DEPOT_PATH" ":" prefix
- ("" "$JULIA_DEPOT_PATH"))))
- #t))))
+ ("" "$JULIA_DEPOT_PATH"))))))))
#:make-flags
(list
(string-append "prefix=" (assoc-ref %outputs "out"))
@@ -504,7 +505,7 @@ libraries. It is also a bit like @code{ldd} and @code{otool -L}.")
("gfortran:lib" ,gfortran "lib")
("gmp" ,gmp)
("lapack" ,lapack)
- ("libgit2" ,libgit2)
+ ("libgit2" ,libgit2-1.1)
("libnghttp2" ,nghttp2 "lib")
("libssh2" ,libssh2)
("libunwind" ,libunwind-julia)