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author | Marius Bakke <mbakke@fastmail.com> | 2019-10-27 10:17:14 +0100 |
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committer | Marius Bakke <mbakke@fastmail.com> | 2019-10-27 10:17:14 +0100 |
commit | a557810ac72effd6841b76772195b10c03dee345 (patch) | |
tree | 26a4d7c1684d4c6fea155bfe05aa3b305499e36f /gnu/packages/cran.scm | |
parent | 4c1918db34e09f0da793c607acc161bdf9ec5535 (diff) | |
parent | 2a19c0deb1da3a9afa8960367a5b84321386ceae (diff) | |
download | guix-patches-a557810ac72effd6841b76772195b10c03dee345.tar guix-patches-a557810ac72effd6841b76772195b10c03dee345.tar.gz |
Merge branch 'master' into staging
Diffstat (limited to 'gnu/packages/cran.scm')
-rw-r--r-- | gnu/packages/cran.scm | 111 |
1 files changed, 79 insertions, 32 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index d3d6f7f4f0..fc5d40186c 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2786,14 +2786,14 @@ Delaunay triangulation and convex hull computation.") (define-public r-ddalpha (package (name "r-ddalpha") - (version "1.3.9") + (version "1.3.10") (source (origin (method url-fetch) (uri (cran-uri "ddalpha" version)) (sha256 (base32 - "1vzs0cvl6xw3h9i00rg3hs02xwgxcnh8326y10kxmhs3qq4m7nb2")))) + "1064g7y8d7kmvd5kjc2m48yvidmh2ci1y0xgil3pcx4ix6mf0ljz")))) (build-system r-build-system) (propagated-inputs `(("r-bh" ,r-bh) @@ -3163,14 +3163,14 @@ Laplace approximation and adaptive Gauss-Hermite quadrature.") (define-public r-jomo (package (name "r-jomo") - (version "2.6-9") + (version "2.6-10") (source (origin (method url-fetch) (uri (cran-uri "jomo" version)) (sha256 (base32 - "16ychdhhv8cii8zrdfdf5gzgnvmfaq573bmi00xqdf323q3lf3xr")))) + "1k9l4290g350zbw1pjs871q9bxj3j2h1dilxpp06v4wy4n7d8qs0")))) (build-system r-build-system) (propagated-inputs `(("r-lme4" ,r-lme4) @@ -6527,25 +6527,51 @@ comparisons to Cohen's d are offered based on Huberty & Lowman's Percentage of Group (Non-)Overlap considerations.") (license license:gpl2))) +(define-public r-deriv + (package + (name "r-deriv") + (version "3.9.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "Deriv" version)) + (sha256 + (base32 + "0hlqm216bg3l79gq6m0am0xz6vd3l2hgjnjm6lym3mkmgkka4kxw")))) + (properties `((upstream-name . "Deriv"))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/web/packages/Deriv") + (synopsis "Symbolic differentiation") + (description + "This package provides an R-based solution for symbolic differentiation. +It admits user-defined functions as well as function substitution in arguments +of functions to be differentiated. Some symbolic simplification is part of +the work.") + (license license:gpl3+))) + (define-public r-doby (package (name "r-doby") - (version "4.6-2") + (version "4.6-3") (source (origin (method url-fetch) (uri (cran-uri "doBy" version)) (sha256 (base32 - "02vbv9nfgywg6lsiialkmfnax5z3rkyb9nr8j9l2cp8xi6ml95mb")))) + "1d0d6pwai1g4i5jls0jm9va29ci5hy92n5957608f3fzi1jwy635")))) (properties `((upstream-name . "doBy"))) (build-system r-build-system) (propagated-inputs - `(("r-dplyr" ,r-dplyr) + `(("r-broom" ,r-broom) + ("r-deriv" ,r-deriv) + ("r-dplyr" ,r-dplyr) ("r-magrittr" ,r-magrittr) ("r-mass" ,r-mass) ("r-matrix" ,r-matrix) - ("r-plyr" ,r-plyr))) + ("r-plyr" ,r-plyr) + ("r-pbkrtest" ,r-pbkrtest) + ("r-tibble" ,r-tibble))) (home-page "http://people.math.aau.dk/~sorenh/software/doBy/") (synopsis "Groupwise statistics, LSmeans, linear contrasts, and utilities") (description @@ -6717,13 +6743,13 @@ the analyzed items.") (define-public r-slam (package (name "r-slam") - (version "0.1-45") + (version "0.1-46") (source (origin (method url-fetch) (uri (cran-uri "slam" version)) (sha256 - (base32 "0xvj8va6xd7zkn3l4a5ad7v62s7xmkz8frq7gpcl3b6vqwckkaw4")))) + (base32 "1ihhbx76miwys35gsbhijriadvrw4f51lc3v45pnn6cvcfd9hr0b")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/slam/") (synopsis "Sparse lightweight arrays and matrices") @@ -7964,14 +7990,14 @@ Hothorn, Westfall, 2010, CRC Press).") (define-public r-emmeans (package (name "r-emmeans") - (version "1.4.1") + (version "1.4.2") (source (origin (method url-fetch) (uri (cran-uri "emmeans" version)) (sha256 (base32 - "1fpawaxnmj67md169a9mzrnnh2d0c973xydfg6hw865933jil9lq")))) + "1sxwbh6sym2shrj7gva8q96ca2csqz3081q4d84avpxz15dfz1z1")))) (build-system r-build-system) (propagated-inputs `(("r-estimability" ,r-estimability) @@ -8197,14 +8223,14 @@ differentiation.") (define-public r-bayestestr (package (name "r-bayestestr") - (version "0.3.0") + (version "0.4.0") (source (origin (method url-fetch) (uri (cran-uri "bayestestR" version)) (sha256 (base32 - "0r453zb106hj9w53jjgckxqajjf7shlrgv10gjxsv8if6qybdz5b")))) + "1d3f50rzjzgzclwd6j887dssyhv7hdq7pik9nnlr3w775v3f69zc")))) (properties `((upstream-name . "bayestestR"))) (build-system r-build-system) (propagated-inputs @@ -8222,14 +8248,14 @@ ROPE percentage and pd).") (define-public r-performance (package (name "r-performance") - (version "0.3.0") + (version "0.4.0") (source (origin (method url-fetch) (uri (cran-uri "performance" version)) (sha256 (base32 - "13j74ffhx950kacs86ixx84nviq9qlwzr7hjnhkmzw2hspjxq99w")))) + "0lxpmp9smn5r3xvfik36nr608wcpmmximjh0v2sckyvjf7hnb4s0")))) (build-system r-build-system) (propagated-inputs `(("r-bayestestr" ,r-bayestestr) @@ -8968,14 +8994,14 @@ other values.") (define-public r-ncdf4 (package (name "r-ncdf4") - (version "1.16.1") + (version "1.17") (source (origin (method url-fetch) (uri (cran-uri "ncdf4" version)) (sha256 (base32 - "083sb24anyd4sw0il3x07pqn9rbx5y5ayqass6mz8x443rnjvphd")))) + "1xls44ln2zjrrlimxl8v4bk2ni3g45c9j0gxdnjx31rikmrc95fv")))) (build-system r-build-system) (inputs `(("netcdf" ,netcdf) @@ -8995,14 +9021,14 @@ netCDF files.") (define-public r-biocmanager (package (name "r-biocmanager") - (version "1.30.8") + (version "1.30.9") (source (origin (method url-fetch) (uri (cran-uri "BiocManager" version)) (sha256 (base32 - "0pqgb7j4aqpcp3bapl313rmyxxj3j96s9csip4f65444gjy5r2x2")))) + "1l9b2mr99nhpvk1wkd93397i0d6z4vvbq3zm8dk86gb1pfci26sx")))) (properties `((upstream-name . "BiocManager"))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/BiocManager/") @@ -10853,14 +10879,14 @@ This makes it a convenient and fast interface to C/C++ and Fortran code.") (define-public r-spam (package (name "r-spam") - (version "2.3-0") + (version "2.3-0.1") (source (origin (method url-fetch) (uri (cran-uri "spam" version)) (sha256 (base32 - "194n5mgvyms9ckjqixl3h33apii8h9kqspqg2si9k741k578qb3w")))) + "0mas2ra7d5f9ccwxwsvxls3dz53prpf59hi2a0rvc347wbm6540b")))) (build-system r-build-system) (propagated-inputs `(("r-dotcall64" ,r-dotcall64))) @@ -11709,18 +11735,17 @@ users of rARPACK are advised to switch to the RSpectra package.") (define-public r-compositions (package (name "r-compositions") - (version "1.40-2") + (version "1.40-3") (source (origin (method url-fetch) (uri (cran-uri "compositions" version)) (sha256 (base32 - "12mp05yi7jkdqg9iwh6bc9sx6sdxagcnrirznxy9hq8502p7238i")))) + "103hbmibrf1n333pn4xpll1gqqsv4szms0n5gdq7zak31aar0bg4")))) (build-system r-build-system) (propagated-inputs `(("r-bayesm" ,r-bayesm) - ("r-energy" ,r-energy) ("r-robustbase" ,r-robustbase) ("r-tensora" ,r-tensora))) (home-page "http://www.stat.boogaart.de/compositions") @@ -12529,21 +12554,43 @@ The bedr package's API enhances access to these tools as well as offers additional utilities for genomic regions processing.") (license license:gpl2))) +(define-public r-sets + (package + (name "r-sets") + (version "1.0-18") + (source + (origin + (method url-fetch) + (uri (cran-uri "sets" version)) + (sha256 + (base32 + "16v7650p47khqrbbw0z98llmwmmhswqmhri0n7nrfhdqwmby1lbl")))) + (properties `((upstream-name . "sets"))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/web/packages/sets") + (synopsis "Sets, generalized sets, customizable sets and intervals") + (description + "This package provides data structures and basic operations for ordinary +sets, generalizations such as fuzzy sets, multisets, and fuzzy multisets, +customizable sets, and intervals.") + (license license:gpl2))) + (define-public r-partitions (package (name "r-partitions") - (version "1.9-19") + (version "1.9-22") (source (origin (method url-fetch) (uri (cran-uri "partitions" version)) (sha256 (base32 - "1pklfnjdc094c8nzkqcdvqzdh8v3p5n8jbg4pf9678iw648saiyx")))) + "1qqy4df28wy4q0g572azrj171jlhvrnzbh7x0wr2g7v6gr20y0ns")))) (build-system r-build-system) (propagated-inputs `(("r-gmp" ,r-gmp) - ("r-polynom" ,r-polynom))) + ("r-polynom" ,r-polynom) + ("r-sets" ,r-sets))) (home-page "https://cran.r-project.org/web/packages/partitions") (synopsis "Additive partitions of integers") (description @@ -14066,14 +14113,14 @@ discriminant analysis for the purpose of classifying high dimensional data.") (define-public r-ggvis (package (name "r-ggvis") - (version "0.4.4") + (version "0.4.5") (source (origin (method url-fetch) (uri (cran-uri "ggvis" version)) (sha256 (base32 - "1bxggjr2313kfy895j0fvrv4bg7yh2z87907lk48i1kn5c9flchk")))) + "091i9f17912j8qcyxppjgwzjnyqj7769ixs9d2gjg6f2clskqdw2")))) (build-system r-build-system) (propagated-inputs `(("r-assertthat" ,r-assertthat) @@ -14746,14 +14793,14 @@ engine (Salmon et al., 2011) as provided by the package @code{sitmo}.") (define-public r-dalex (package (name "r-dalex") - (version "0.4.7") + (version "0.4.9") (source (origin (method url-fetch) (uri (cran-uri "DALEX" version)) (sha256 (base32 - "0iiwkf0pfdb90lf1xhv43qd32z3cjmkmf0ly9841n5lldkjazy3h")))) + "1zviaf7530v8w996lbma0vplabrapgwldi7h70pr0439sxaqd421")))) (properties `((upstream-name . "DALEX"))) (build-system r-build-system) (propagated-inputs `(("r-ggplot2" ,r-ggplot2))) |