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| author | Ricardo Wurmus <rekado@elephly.net> | 2020-06-12 16:01:24 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2020-06-13 01:19:40 +0200 |
| commit | bb18d11d85031d662a962f091b7a77ea4dd7cff0 (patch) | |
| tree | 0316bb759df4b5c9a15ddd3e11edc10c1e7106f9 /gnu/packages/bioinformatics.scm | |
| parent | 681cca95b328ec478c5f86414900ff748b535647 (diff) | |
| download | guix-patches-bb18d11d85031d662a962f091b7a77ea4dd7cff0.tar guix-patches-bb18d11d85031d662a962f091b7a77ea4dd7cff0.tar.gz | |
gnu: r-systempiper: Update to 1.22.0.
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.22.0.
[propagated-inputs]: Add r-assertthat, r-magrittr, r-rsvg, r-dot, and
r-stringr; remove r-biocgenerics.
[native-inputs]: Add r-knitr.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 12 |
1 files changed, 9 insertions, 3 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index adb6f4fc8f..672deb6eae 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7246,22 +7246,23 @@ ungapped alignment formats.") (define-public r-systempiper (package (name "r-systempiper") - (version "1.20.0") + (version "1.22.0") (source (origin (method url-fetch) (uri (bioconductor-uri "systemPipeR" version)) (sha256 (base32 - "17r25v9wcglyma2v1c8fka80dm7fx86saxlsb2aprmwi4h3dhb0j")))) + "01ilhlrvy28jfdyxjria4024yryj5zgympgqznw17g3y3az78kk2")))) (properties `((upstream-name . "systemPipeR"))) (build-system r-build-system) (propagated-inputs `(("r-annotate" ,r-annotate) + ("r-assertthat" ,r-assertthat) ("r-batchtools" ,r-batchtools) - ("r-biocgenerics" ,r-biocgenerics) ("r-biostrings" ,r-biostrings) ("r-deseq2" ,r-deseq2) + ("r-dot" ,r-dot) ("r-edger" ,r-edger) ("r-genomicfeatures" ,r-genomicfeatures) ("r-genomicranges" ,r-genomicranges) @@ -7269,13 +7270,18 @@ ungapped alignment formats.") ("r-go-db" ,r-go-db) ("r-gostats" ,r-gostats) ("r-limma" ,r-limma) + ("r-magrittr" ,r-magrittr) ("r-pheatmap" ,r-pheatmap) ("r-rjson" ,r-rjson) ("r-rsamtools" ,r-rsamtools) + ("r-rsvg" ,r-rsvg) ("r-shortread" ,r-shortread) + ("r-stringr" ,r-stringr) ("r-summarizedexperiment" ,r-summarizedexperiment) ("r-yaml" ,r-yaml) ("r-variantannotation" ,r-variantannotation))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/tgirke/systemPipeR") (synopsis "Next generation sequencing workflow and reporting environment") (description |