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| author | Maxim Cournoyer <maxim.cournoyer@gmail.com> | 2021-12-22 21:02:19 -0500 |
|---|---|---|
| committer | Maxim Cournoyer <maxim.cournoyer@gmail.com> | 2022-01-10 11:44:46 -0500 |
| commit | 74af2dd14808732b0db27034fc9423c38adbbc7f (patch) | |
| tree | 0c1e27ac89b8806b17872ab8e97f2c04797c654c /gnu/packages/bioinformatics.scm | |
| parent | 3c9a98bf345c947f0c1bfce347ba26e326ea0869 (diff) | |
| download | guix-patches-74af2dd14808732b0db27034fc9423c38adbbc7f.tar guix-patches-74af2dd14808732b0db27034fc9423c38adbbc7f.tar.gz | |
gnu: htslib: Update to 1.14.
* gnu/packages/bioinformatics.scm (htslib): Update to 1.14.
(htslib-1.12): New variable.
(htslib-1.10, htslib-1.9, htslib-1.3)
(htslib-for-samtools-1.2): Normalize style.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 28 |
1 files changed, 18 insertions, 10 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 487c43a2da..36167d0ba0 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -4786,7 +4786,7 @@ performance.") (define-public htslib (package (name "htslib") - (version "1.12") + (version "1.14") (source (origin (method url-fetch) (uri (string-append @@ -4794,7 +4794,7 @@ performance.") version "/htslib-" version ".tar.bz2")) (sha256 (base32 - "1jplnvizgr0fyyvvmkfmnsywrrpqhid3760vw15bllz98qdi9012")))) + "0pwk8yhhvb85mi1d2qhwsb4samc3rmbcrq7b1s0jz0glaa7in8pd")))) (build-system gnu-build-system) ;; Let htslib translate "gs://" and "s3://" to regular https links with ;; "--enable-gcs" and "--enable-s3". For these options to work, we also @@ -4820,9 +4820,20 @@ data. It also provides the @command{bgzip}, @command{htsfile}, and ;; the rest is released under the Expat license (license (list license:expat license:bsd-3)))) +(define-public htslib-1.12 + (package/inherit htslib + (version "1.12") + (source (origin + (method url-fetch) + (uri (string-append + "https://github.com/samtools/htslib/releases/download/" + version "/htslib-" version ".tar.bz2")) + (sha256 + (base32 + "1jplnvizgr0fyyvvmkfmnsywrrpqhid3760vw15bllz98qdi9012")))))) + (define-public htslib-1.10 - (package (inherit htslib) - (name "htslib") + (package/inherit htslib (version "1.10") (source (origin (method url-fetch) @@ -4834,8 +4845,7 @@ data. It also provides the @command{bgzip}, @command{htsfile}, and "0wm9ay7qgypj3mwx9zl1mrpnr36298b1aj5vx69l4k7bzbclvr3s")))))) (define-public htslib-1.9 - (package (inherit htslib) - (name "htslib") + (package/inherit htslib (version "1.9") (source (origin (method url-fetch) @@ -4848,8 +4858,7 @@ data. It also provides the @command{bgzip}, @command{htsfile}, and ;; This package should be removed once no packages rely upon it. (define htslib-1.3 - (package - (inherit htslib) + (package/inherit htslib (version "1.3.1") (source (origin (method url-fetch) @@ -4861,8 +4870,7 @@ data. It also provides the @command{bgzip}, @command{htsfile}, and "1rja282fwdc25ql6izkhdyh8ppw8x2fs0w0js78zgkmqjlikmma9")))))) (define htslib-for-samtools-1.2 - (package - (inherit htslib) + (package/inherit htslib (version "1.2.1") (source (origin (method url-fetch) |