diff options
| author | Ricardo Wurmus <rekado@elephly.net> | 2020-06-12 16:19:30 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2020-06-13 01:19:43 +0200 |
| commit | 3c53617efc25e191e0246b6254abd7b6dedc86c0 (patch) | |
| tree | 89bb7866d1c407acce8b22ae7d32c06db59b420a /gnu/packages/bioinformatics.scm | |
| parent | 261d93140625bfb408d0f122cfbbdf44c62c34fd (diff) | |
| download | guix-patches-3c53617efc25e191e0246b6254abd7b6dedc86c0.tar guix-patches-3c53617efc25e191e0246b6254abd7b6dedc86c0.tar.gz | |
gnu: r-rcas: Update to 1.14.0.
* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.14.0.
[propagated-inputs]: Remove r-annotationdbi, r-biomart, r-dbi, r-knitr,
r-motifrg, r-org-hs-eg-db, and r-topgo; add r-bsgenome, r-gprofiler2,
r-iranges, and r-ranger.
[native-inputs]: Add r-knitr.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 19 |
1 files changed, 9 insertions, 10 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index f604daf34b..6e1c92c88e 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8694,24 +8694,22 @@ paired-end data.") (define-public r-rcas (package (name "r-rcas") - (version "1.12.0") + (version "1.14.0") (source (origin (method url-fetch) (uri (bioconductor-uri "RCAS" version)) (sha256 (base32 - "1s3gvvxi1029d1vfwnjh21nnw3mlx08kcwz63891hml9y850cvsn")))) + "0f812pgv3ys1zv4n9sqkgm01hj4cdd0i0h85dqbhkwd94zl6cavl")))) (properties `((upstream-name . "RCAS"))) (build-system r-build-system) (propagated-inputs - `(("r-annotationdbi" ,r-annotationdbi) - ("r-biocgenerics" ,r-biocgenerics) - ("r-biomart" ,r-biomart) + `(("r-biocgenerics" ,r-biocgenerics) ("r-biostrings" ,r-biostrings) + ("r-bsgenome" ,r-bsgenome) ("r-bsgenome-hsapiens-ucsc-hg19" ,r-bsgenome-hsapiens-ucsc-hg19) ("r-cowplot" ,r-cowplot) ("r-data-table" ,r-data-table) - ("r-dbi" ,r-dbi) ("r-dt" ,r-dt) ("r-genomation" ,r-genomation) ("r-genomeinfodb" ,r-genomeinfodb) @@ -8719,20 +8717,21 @@ paired-end data.") ("r-genomicranges" ,r-genomicranges) ("r-ggplot2" ,r-ggplot2) ("r-ggseqlogo" ,r-ggseqlogo) - ("r-knitr" ,r-knitr) - ("r-motifrg" ,r-motifrg) - ("r-org-hs-eg-db" ,r-org-hs-eg-db) + ("r-gprofiler2" ,r-gprofiler2) + ("r-iranges" ,r-iranges) ("r-pbapply" ,r-pbapply) ("r-pheatmap" ,r-pheatmap) ("r-plotly" ,r-plotly) ("r-plotrix" ,r-plotrix) ("r-proxy" ,r-proxy) + ("r-ranger" ,r-ranger) ("r-rsqlite" ,r-rsqlite) ("r-rtracklayer" ,r-rtracklayer) ("r-rmarkdown" ,r-rmarkdown) ("r-s4vectors" ,r-s4vectors) - ("r-topgo" ,r-topgo) ("pandoc" ,ghc-pandoc))) + (native-inputs + `(("r-knitr" ,r-knitr))) (synopsis "RNA-centric annotation system") (description "RCAS aims to be a standalone RNA-centric annotation system that provides |