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authorMaxim Cournoyer <maxim.cournoyer@gmail.com>2022-04-29 13:35:34 -0400
committerMaxim Cournoyer <maxim.cournoyer@gmail.com>2022-05-31 14:52:17 -0400
commit8bcb07d08936b41e9e737d52586683cadfddea61 (patch)
tree7adbe47c583ba909c99e947987226763d5e09f04 /gnu/packages/bioinformatics.scm
parent3d63c5f1ba4da00fd795e2e9a836806defc74378 (diff)
downloadguix-patches-8bcb07d08936b41e9e737d52586683cadfddea61.tar
guix-patches-8bcb07d08936b41e9e737d52586683cadfddea61.tar.gz
gnu: Remove pepr.
* gnu/packages/bioinformatics.scm (pepr): Delete variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r--gnu/packages/bioinformatics.scm26
1 files changed, 0 insertions, 26 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 0a4c68e8c7..6f247cf412 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8729,32 +8729,6 @@ regions of statistically significant read enrichment. Additional covariates
may optionally be provided to further inform the peak-calling process.")
(license license:gpl3+))))
-(define-public pepr
- (package
- (name "pepr")
- (version "1.0.9")
- (source (origin
- (method url-fetch)
- (uri (pypi-uri "PePr" version))
- (sha256
- (base32
- "0qxjfdpl1b1y53nccws2d85f6k74zwmx8y8sd9rszcqhfayx6gdx"))))
- (build-system python-build-system)
- (arguments
- `(#:python ,python-2 ; python2 only
- #:tests? #f)) ; no tests included
- (propagated-inputs
- (list python2-numpy python2-scipy python2-pysam))
- (home-page "https://github.com/shawnzhangyx/PePr")
- (synopsis "Peak-calling and prioritization pipeline for ChIP-Seq data")
- (description
- "PePr is a ChIP-Seq peak calling or differential binding analysis tool
-that is primarily designed for data with biological replicates. It uses a
-negative binomial distribution to model the read counts among the samples in
-the same group, and look for consistent differences between ChIP and control
-group or two ChIP groups run under different conditions.")
- (license license:gpl3+)))
-
(define-public filevercmp
(let ((commit "1a9b779b93d0b244040274794d402106907b71b7")
(revision "1"))