From 8bcb07d08936b41e9e737d52586683cadfddea61 Mon Sep 17 00:00:00 2001 From: Maxim Cournoyer Date: Fri, 29 Apr 2022 13:35:34 -0400 Subject: gnu: Remove pepr. * gnu/packages/bioinformatics.scm (pepr): Delete variable. --- gnu/packages/bioinformatics.scm | 26 -------------------------- 1 file changed, 26 deletions(-) (limited to 'gnu/packages/bioinformatics.scm') diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 0a4c68e8c7..6f247cf412 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8729,32 +8729,6 @@ regions of statistically significant read enrichment. Additional covariates may optionally be provided to further inform the peak-calling process.") (license license:gpl3+)))) -(define-public pepr - (package - (name "pepr") - (version "1.0.9") - (source (origin - (method url-fetch) - (uri (pypi-uri "PePr" version)) - (sha256 - (base32 - "0qxjfdpl1b1y53nccws2d85f6k74zwmx8y8sd9rszcqhfayx6gdx")))) - (build-system python-build-system) - (arguments - `(#:python ,python-2 ; python2 only - #:tests? #f)) ; no tests included - (propagated-inputs - (list python2-numpy python2-scipy python2-pysam)) - (home-page "https://github.com/shawnzhangyx/PePr") - (synopsis "Peak-calling and prioritization pipeline for ChIP-Seq data") - (description - "PePr is a ChIP-Seq peak calling or differential binding analysis tool -that is primarily designed for data with biological replicates. It uses a -negative binomial distribution to model the read counts among the samples in -the same group, and look for consistent differences between ChIP and control -group or two ChIP groups run under different conditions.") - (license license:gpl3+))) - (define-public filevercmp (let ((commit "1a9b779b93d0b244040274794d402106907b71b7") (revision "1")) -- cgit v1.2.3