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authorzimoun <zimon.toutoune@gmail.com>2021-03-15 19:08:57 +0100
committerRicardo Wurmus <rekado@elephly.net>2021-03-15 23:30:26 +0100
commitf3f09b99cd32f46c47db30f0afb632614c43172d (patch)
tree05e60b183fb59eaf660d4452e0c5c52c335eb961 /gnu/packages/bioconductor.scm
parente56b3db82ea81e88632a15994a5792849ecb0c5c (diff)
downloadguix-patches-f3f09b99cd32f46c47db30f0afb632614c43172d.tar
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gnu: r-genomicranges: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-genomicranges): Move from here... * gnu/packages/bioconductor.scm (r-genomicranges): ...to here.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm31
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index fdb2f7c7ac..ec273cae70 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1770,6 +1770,37 @@ translation between different chromosome sequence naming conventions (e.g.,
names in their natural, rather than lexicographic, order.")
(license license:artistic2.0)))
+(define-public r-genomicranges
+ (package
+ (name "r-genomicranges")
+ (version "1.42.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "GenomicRanges" version))
+ (sha256
+ (base32
+ "0j4py5g6pdj35xhlaqhxxhg55j9l4mcdk3yck4dgyavv5f2dh24i"))))
+ (properties
+ `((upstream-name . "GenomicRanges")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-iranges" ,r-iranges)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-xvector" ,r-xvector)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://bioconductor.org/packages/GenomicRanges")
+ (synopsis "Representation and manipulation of genomic intervals")
+ (description
+ "This package provides tools to efficiently represent and manipulate
+genomic annotations and alignments is playing a central role when it comes to
+analyzing high-throughput sequencing data (a.k.a. NGS data). The
+GenomicRanges package defines general purpose containers for storing and
+manipulating genomic intervals and variables defined along a genome.")
+ (license license:artistic2.0)))
+
(define-public r-gostats
(package
(name "r-gostats")