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| author | Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> | 2021-10-30 17:55:05 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2021-11-27 10:36:27 +0100 |
| commit | c96d8ce7208ea032383811b9b79dc57ce0e3ba07 (patch) | |
| tree | 15200e92c56d7f14c5777639049ba16aebe636b4 /gnu/packages/bioconductor.scm | |
| parent | fefdea2a1ae1534ccc7011f2d2ac6ed0ab2925e8 (diff) | |
| download | guix-patches-c96d8ce7208ea032383811b9b79dc57ce0e3ba07.tar guix-patches-c96d8ce7208ea032383811b9b79dc57ce0e3ba07.tar.gz | |
gnu: Add r-stringdb.
* gnu/packages/bioconductor.scm (r-stringdb): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 33 |
1 files changed, 33 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 3dc8c61c4e..527e549bc6 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4386,6 +4386,39 @@ events and allows for the incorporation of prior knowledge through supervised graph construction.") (license license:artistic2.0))) +(define-public r-stringdb + (package + (name "r-stringdb") + (version "2.6.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "STRINGdb" version)) + (sha256 + (base32 "1hvb73anhbf1g82nn5m11s783z6ihvlavf7p30w29qggxggnl6lm")))) + (properties `((upstream-name . "STRINGdb"))) + (build-system r-build-system) + (propagated-inputs + `(("r-gplots" ,r-gplots) + ("r-hash" ,r-hash) + ("r-igraph" ,r-igraph) + ("r-plotrix" ,r-plotrix) + ("r-plyr" ,r-plyr) + ("r-png" ,r-png) + ("r-rcolorbrewer" ,r-rcolorbrewer) + ("r-rcurl" ,r-rcurl) + ("r-sqldf" ,r-sqldf))) + (home-page "https://git.bioconductor.org/packages/STRINGdb") + (synopsis "Search tool for the retrieval of interacting proteins database") + (description + "The @code{STRINGdb} package provides an R interface to the STRING +protein-protein interactions database. @url{https://www.string-db.org, +STRING} is a database of known and predicted protein-protein interactions. +The interactions include direct (physical) and indirect (functional) +associations. Each interaction is associated with a combined confidence score +that integrates the various evidences.") + (license license:gpl2))) + (define-public r-structuralvariantannotation (package (name "r-structuralvariantannotation") |