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| author | Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> | 2020-12-16 23:03:41 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2020-12-17 11:26:53 +0100 |
| commit | 7395458d40e156d683a0ce3604c19b38f4488c13 (patch) | |
| tree | 7e1d4881073475f24f965eaefef3299ba72b0f88 /gnu/packages/bioconductor.scm | |
| parent | eb2f1a7dd94d816cfe5741f4053fc7e9d87eb8f4 (diff) | |
| download | guix-patches-7395458d40e156d683a0ce3604c19b38f4488c13.tar guix-patches-7395458d40e156d683a0ce3604c19b38f4488c13.tar.gz | |
gnu: Add r-kegggraph.
* gnu/packages/bioconductor.scm (r-kegggraph): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 26 |
1 files changed, 26 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 76c1423bc9..9189e53d17 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -9213,3 +9213,29 @@ CATALYST (Cytometry dATa anALYSis Tools) to provide a pipeline for preprocessing of cytometry data, including i) normalization using bead standards, ii) single-cell deconvolution, and iii) bead-based compensation.") (license license:gpl2+))) + +(define-public r-kegggraph + (package + (name "r-kegggraph") + (version "1.50.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "KEGGgraph" version)) + (sha256 + (base32 "1h293hn02ysm923bh9gxk87xv663xiqchqcvpaxpla9c3yrgkx2v")))) + (properties `((upstream-name . "KEGGgraph"))) + (build-system r-build-system) + (propagated-inputs + `(("r-graph" ,r-graph) + ("r-rcurl" ,r-rcurl) + ("r-xml" ,r-xml))) + (home-page "https://bioconductor.org/packages/KEGGgraph") + (synopsis "Graph approach to Kegg Pathway database in R and Bioconductor") + (description + "@code{r-kegggraph} is an interface between Kegg Pathway database and graph +object as well as a collection of tools to analyze, dissect and visualize these +graphs. It parses the regularly updated kgml (Kegg XML) files into graph models +maintaining all essential pathway attributes. The package offers +functionalities including parsing, graph operation, visualization and etc.") + (license license:gpl2+))) |