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| author | Sharlatan Hellseher <sharlatanus@gmail.com> | 2022-06-26 18:34:58 +0100 |
|---|---|---|
| committer | Ludovic Courtès <ludo@gnu.org> | 2022-08-04 12:05:47 +0200 |
| commit | cdff1423c0d03e7d3e8445cf14f1123f694468c8 (patch) | |
| tree | 0d73c1b7142ec31400cb0a523a0745c5e11fa053 /gnu/packages/astronomy.scm | |
| parent | 4ccd4176a2f63004fe10c9e8c9ccc8ba46b9d408 (diff) | |
| download | guix-patches-cdff1423c0d03e7d3e8445cf14f1123f694468c8.tar guix-patches-cdff1423c0d03e7d3e8445cf14f1123f694468c8.tar.gz | |
gnu: Add aoflagger.
* gnu/packages/astronomy.scm (aoflagger): New variable.
* gnu/packages/patches/aoflagger-use-system-provided-pybind11.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Diffstat (limited to 'gnu/packages/astronomy.scm')
| -rw-r--r-- | gnu/packages/astronomy.scm | 63 |
1 files changed, 63 insertions, 0 deletions
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm index 336ef02d66..3c4c92619e 100644 --- a/gnu/packages/astronomy.scm +++ b/gnu/packages/astronomy.scm @@ -142,6 +142,69 @@ moment, supported SPICE files are: @end itemize\n") (license license:cecill))) +(define-public aoflagger + (package + (name "aoflagger") + (version "3.2.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://gitlab.com/aroffringa/aoflagger") + (commit (string-append "v" version)))) + (sha256 + (base32 "1dcbfrbiybhpbypna2xhddx1wk7yifh38ha2r6p5rzsikzwlsin1")) + (patches + (search-patches "aoflagger-use-system-provided-pybind11.patch")) + (file-name (git-file-name name version)))) + (build-system cmake-build-system) + (arguments + (list + ;; XXX: Tests require external files download from + ;; https://www.astron.nl/citt/ci_data/aoflagger/ + ;; FIXME: runtest is not found + #:tests? #f + #:configure-flags + #~(list (string-append "-DCASACORE_ROOT_DIR=" + #$(this-package-input "casacore"))) + #:phases + #~(modify-phases %standard-phases + ;; aocommon and pybind11 are expected to be found as git submodules, + ;; link them before build. + (add-after 'unpack 'link-submodule-package + (lambda _ + (rmdir "external/aocommon") + (symlink #$(this-package-native-input "aocommon") + (string-append (getcwd) "/external/aocommon"))))))) + (native-inputs + (list aocommon + boost + pkg-config + python + pybind11)) + (inputs + (list casacore + cfitsio + fftw + gsl + gtkmm-3 + hdf5 + lapack + libpng + libsigc++ + libxml2 + lua + openblas + zlib)) + (home-page "https://gitlab.com/aroffringa/aoflagger") + (synopsis "Astronomical tool that can find and remove radio-frequency interference") + (description + "AOFlagger is a tool that can find and remove radio-frequency +interference (RFI) in radio astronomical observations. It can make use of Lua +scripts to make flagging strategies flexible, and the tools are applicable to a +wide set of telescopes.") + (license license:gpl3+))) + (define-public casacore (package (name "casacore") |