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author | Ricardo Wurmus <rekado@elephly.net> | 2019-12-15 14:25:11 +0100 |
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committer | Ricardo Wurmus <rekado@elephly.net> | 2019-12-15 15:38:52 +0100 |
commit | 82c1111745828a9595f129360198229f1a108263 (patch) | |
tree | 9308b01e9a3dfbcbfe6d8192056e74fcc3c58267 | |
parent | f1964519e748cda1703ec874ce8e33bcd85ddcb9 (diff) | |
download | guix-patches-82c1111745828a9595f129360198229f1a108263.tar guix-patches-82c1111745828a9595f129360198229f1a108263.tar.gz |
gnu: Add r-flowworkspace.
* gnu/packages/bioconductor.scm (r-flowworkspace): New variable.
-rw-r--r-- | gnu/packages/bioconductor.scm | 48 |
1 files changed, 48 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 8d0861a5f3..babb553640 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -5501,6 +5501,54 @@ model with Box-Cox transformation.") for other R packages to compile and link against.") (license license:bsd-3))) +(define-public r-flowworkspace + (package + (name "r-flowworkspace") + (version "3.34.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "flowWorkspace" version)) + (sha256 + (base32 + "0hvbkxyylsygra31l1lxyvbsr5hc50lqy1y7gwrfgrfil4a2m762")))) + (properties `((upstream-name . "flowWorkspace"))) + (build-system r-build-system) + (propagated-inputs + `(("r-bh" ,r-bh) + ("r-biobase" ,r-biobase) + ("r-biocgenerics" ,r-biocgenerics) + ("r-cytolib" ,r-cytolib) + ("r-data-table" ,r-data-table) + ("r-digest" ,r-digest) + ("r-dplyr" ,r-dplyr) + ("r-flowcore" ,r-flowcore) + ("r-flowviz" ,r-flowviz) + ("r-graph" ,r-graph) + ("r-gridextra" ,r-gridextra) + ("r-lattice" ,r-lattice) + ("r-latticeextra" ,r-latticeextra) + ("r-matrixstats" ,r-matrixstats) + ("r-ncdfflow" ,r-ncdfflow) + ("r-rbgl" ,r-rbgl) + ("r-rcolorbrewer" ,r-rcolorbrewer) + ("r-rcpp" ,r-rcpp) + ("r-rcppparallel" ,r-rcppparallel) + ("r-rgraphviz" ,r-rgraphviz) + ("r-rprotobuflib" ,r-rprotobuflib) + ("r-scales" ,r-scales) + ("r-stringr" ,r-stringr))) + (home-page "https://bioconductor.org/packages/flowWorkspace/") + (synopsis "Infrastructure for working with cytometry data") + (description + "This package is designed to facilitate comparison of automated gating +methods against manual gating done in flowJo. This package allows you to +import basic flowJo workspaces into BioConductor and replicate the gating from +flowJo using the @code{flowCore} functionality. Gating hierarchies, groups of +samples, compensation, and transformation are performed so that the output +matches the flowJo analysis.") + (license license:artistic2.0))) + (define-public r-flowsom (package (name "r-flowsom") |