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authorMădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>2022-04-26 16:07:09 +0200
committerRicardo Wurmus <rekado@elephly.net>2022-04-27 16:03:22 +0200
commit43dc50a5c7271cbdea15b0e14ce69668191cfdaa (patch)
tree4b1514d8177ce5a94bb411257fa49c1a8f355bb3
parenta45dfa8a731c9ba2626ee7ca19e7d61f2e82925d (diff)
downloadguix-patches-43dc50a5c7271cbdea15b0e14ce69668191cfdaa.tar
guix-patches-43dc50a5c7271cbdea15b0e14ce69668191cfdaa.tar.gz
gnu: Add r-adsplit.
* gnu/packages/bioconductor.scm (r-adsplit): New variable.
-rw-r--r--gnu/packages/bioconductor.scm28
1 files changed, 28 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index f55416ef43..6b718b7e10 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1713,6 +1713,34 @@ existing imputation methods like @code{DrImpute} and @code{SAVER}.
results from different methods into an ensemble.")
(license license:gpl3+)))
+(define-public r-adsplit
+ (package
+ (name "r-adsplit")
+ (version "1.64.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "adSplit" version))
+ (sha256
+ (base32
+ "1b4ck371h3a76m5h0brvlzsyg1g6q5fjrhra5hqv9pwxr330h9r2"))))
+ (properties `((upstream-name . "adSplit")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-annotationdbi
+ r-biobase
+ r-cluster
+ r-go-db
+ r-keggrest
+ r-multtest))
+ (home-page "https://compdiag.molgen.mpg.de/software/adSplit.shtml")
+ (synopsis "Annotation-driven splits in microarray data")
+ (description
+ "This package implements clustering of microarray gene expression
+profiles according to functional annotations. For each term genes are
+annotated to, splits into two subclasses are computed and a significance of
+the supporting gene set is determined.")
+ (license license:gpl2+)))
+
(define-public r-aneufinder
(package
(name "r-aneufinder")