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author | Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> | 2024-04-23 15:32:09 +0200 |
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committer | Guix Patches Tester <> | 2024-04-23 15:49:11 +0200 |
commit | a8c9443b760ee52250937b825ddfaacd329cba90 (patch) | |
tree | 7f63919838da0a3ad4a76cbbff31deb23bcf0f47 | |
parent | d8dfbe83c23ede9294538bd5a966ab222eaabcc0 (diff) | |
download | guix-patches-issue-70536.tar guix-patches-issue-70536.tar.gz |
gnu: Add r-seraster.issue-70536
* gnu/packages/bioconductor.scm (r-seraster): New variable.
Change-Id: I345dcbdfba23b34f122d7c193604cf950fe0d8f0
-rw-r--r-- | gnu/packages/bioconductor.scm | 40 |
1 files changed, 40 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 0fca094977..828d9cfe36 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -11025,6 +11025,46 @@ sequence motif occurrences across a large set of sequences centred at a common reference point and sorted by a user defined feature.") (license license:gpl3+))) +;; This is not a Bioconductor package but it depends on three packages. +(define-public r-seraster + ;; There are no tags or releases. + (let ((commit "4fdc1ffe5d3feb65de9880329d221cf276b393a1") + (revision "1")) + (package + (name "r-seraster") + (version (git-version "0.99.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/JEFworks-Lab/SEraster") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0y33lk8q0h9nfzmf7slxxvw3l0djassp4l63nsjpm3p6z4pah5s4")))) + (properties `((upstream-name . "SEraster"))) + (build-system r-build-system) + (propagated-inputs + (list r-biocparallel + r-ggplot2 + r-matrix + r-rearrr + r-sf + r-spatialexperiment + r-summarizedexperiment)) + (home-page "https://github.com/JEFworks-Lab/SEraster") + (synopsis + "Rasterization framework for scalable spatial omics data analysis") + (description "SEraster is a rasterization preprocessing framework that +aggregates cellular information into spatial pixels to reduce resource requirements +for spatial omics data analysis. This package reduces the number of points in +spatial omics datasets for downstream analysis through a process of rasterization +where single cells gene expression or cell-type labels are aggregated into equally +sized pixels based on a user-defined resolution. SEraster can be incorporated +with other packages to conduct downstream analyses for spatial omics datasets, +such as detecting spatially variable genes.") + (license license:gpl3)))) + (define-public r-sesame (package (name "r-sesame") |