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| author | Ricardo Wurmus <rekado@elephly.net> | 2022-08-14 20:39:31 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-08-14 20:43:01 +0200 |
| commit | 593327ef5b506f031d75349fdcda1ad04e6684ed (patch) | |
| tree | d33dd2557050a4b35fc132e28088a12bc42e6ade | |
| parent | 8e87bbde1358a00bfe19c73c366cb620899a4119 (diff) | |
| download | guix-patches-593327ef5b506f031d75349fdcda1ad04e6684ed.tar guix-patches-593327ef5b506f031d75349fdcda1ad04e6684ed.tar.gz | |
gnu: r-bgx: Build without CPU tuning.
Fixes <https://issues.guix.gnu.org/57210>.
* gnu/packages/bioconductor.scm (r-bgx)[arguments]: Add phase
'do-not-tune-cflags-for-reproducibility to patch configure.ac.
[inputs]: Add boost.
[native-inputs]: Add autoconf and automake.
| -rw-r--r-- | gnu/packages/bioconductor.scm | 15 |
1 files changed, 15 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 07440dff69..111bd65823 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -35,6 +35,7 @@ #:use-module (guix git-download) #:use-module (guix build-system r) #:use-module (gnu packages) + #:use-module (gnu packages autotools) #:use-module (gnu packages base) #:use-module (gnu packages bioinformatics) #:use-module (gnu packages boost) @@ -12995,8 +12996,22 @@ gene expression.") "0q2y4n6bcc9pvz5sgfkw1lrb00rrp7q29i1vh7srdfmfhgpyz6bk")))) (properties `((upstream-name . "bgx"))) (build-system r-build-system) + (arguments + (list + #:phases + '(modify-phases %standard-phases + (add-after 'unpack 'do-not-tune-cflags-for-reproducibility + (lambda _ + (substitute* "configure.ac" + (("AX_GCC_ARCHFLAG.*") "")) + (delete-file "configure") + (invoke "autoreconf" "-vif")))))) + (inputs + (list boost)) (propagated-inputs (list r-affy r-biobase r-gcrma r-rcpp)) + (native-inputs + (list autoconf automake)) (home-page "https://bioconductor.org/packages/bgx/") (synopsis "Bayesian gene expression") (description |