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| author | Ricardo Wurmus <rekado@elephly.net> | 2024-01-23 13:25:02 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2024-01-23 13:42:55 +0100 |
| commit | 1bdc4eeb46f97a313aaa1d480528a86458980807 (patch) | |
| tree | 1da0a0ca4f7a48dc7c1971ac941fa72d4be9e933 | |
| parent | a313875476aaa2c401dde56e77a483f9cda03d49 (diff) | |
| download | guix-patches-1bdc4eeb46f97a313aaa1d480528a86458980807.tar guix-patches-1bdc4eeb46f97a313aaa1d480528a86458980807.tar.gz | |
gnu: Add python-graphtools.
* gnu/packages/graph.scm (python-graphtools): New variable.
Change-Id: If08b1460447702f7ec2e64f013a52a7065076b01
| -rw-r--r-- | gnu/packages/graph.scm | 53 |
1 files changed, 53 insertions, 0 deletions
diff --git a/gnu/packages/graph.scm b/gnu/packages/graph.scm index 6411afd9e0..fd684ca77d 100644 --- a/gnu/packages/graph.scm +++ b/gnu/packages/graph.scm @@ -57,6 +57,8 @@ #:use-module (gnu packages graphics) #:use-module (gnu packages graphviz) #:use-module (gnu packages gtk) + #:use-module (gnu packages linux) + #:use-module (gnu packages machine-learning) #:use-module (gnu packages maths) #:use-module (gnu packages multiprecision) #:use-module (gnu packages ncurses) @@ -427,6 +429,57 @@ algorithm for community detection in large networks.") large networks.") (license license:gpl3+))) +(define-public python-graphtools + (package + (name "python-graphtools") + (version "1.5.3") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/KrishnaswamyLab/graphtools") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1aaxhij4y5z2vvc34qnb5py6nw3ciz35a3z4lfr223f9kvfpqgak")))) + (build-system pyproject-build-system) + (arguments + (list + #:phases + '(modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + ;; Incompatibility with sklearn. + ;; 'kNNLandmarkGraph' object has no attribute '_landmark_op' + (delete-file "test/test_landmark.py") + (setenv "LOKY_MAX_CPU_COUNT" "1") + (invoke "nose2" "-v"))))))) + (propagated-inputs + (list python-deprecated + python-future + python-numpy + python-pygsp + python-scikit-learn + python-scipy + python-tasklogger)) + (native-inputs + (list util-linux ;for lscpu + python-anndata + python-black + python-coverage + python-coveralls + python-nose + python-nose2 + python-pandas + python-parameterized + python-igraph)) + (home-page "https://github.com/KrishnaswamyLab/graphtools") + (synopsis "Tools for building and manipulating graphs in Python") + (description "This package provides tools for building and manipulating +graphs in Python.") + (license license:gpl3))) + (define-public python-louvain-igraph (package (name "python-louvain-igraph") |