summaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorMădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>2022-04-13 00:30:47 +0200
committerRicardo Wurmus <rekado@elephly.net>2022-04-14 13:18:07 +0200
commit1b2b1c30e2adec2afa868badbada45d7d7cd755d (patch)
tree853176f2fae4c46f6b863883e37b36dac67e819b
parentdd9d26bce626cb2900910f1706de38c47a52915a (diff)
downloadguix-patches-1b2b1c30e2adec2afa868badbada45d7d7cd755d.tar
guix-patches-1b2b1c30e2adec2afa868badbada45d7d7cd755d.tar.gz
gnu: Add r-acde.
* gnu/packages/bioconductor.scm (r-acde): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
-rw-r--r--gnu/packages/bioconductor.scm25
1 files changed, 25 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 786e79b931..6559e69711 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -11729,6 +11729,31 @@ array noise or normalization methods. It is also very fast and can be applied
on whole-genome tiling array experiments quite easily with enough memory.")
(license license:gpl2+)))
+(define-public r-acde
+ (package
+ (name "r-acde")
+ (version "1.24.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "acde" version))
+ (sha256
+ (base32
+ "13ks87am73m3bjn9ljapxml2a9cxdpgv9flwvly8aqmi3ndxyqi6"))))
+ (properties `((upstream-name . "acde")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-boot))
+ (home-page "https://bioconductor.org/packages/acde")
+ (synopsis
+ "Identification of differentially expressed genes with artificial components")
+ (description
+ "This package provides a multivariate inferential analysis method for
+detecting differentially expressed genes in gene expression data. It uses
+artificial components, close to the data's principal components but with an
+exact interpretation in terms of differential genetic expression, to identify
+differentially expressed genes while controlling the @dfn{false discovery
+rate} (FDR).")
+ (license license:gpl3)))
+
;; This is a CRAN package, but it depends on Bioconductor packages, so we put
;; it here.
(define-public r-activedriverwgs