blob: 614f5fd6bd3a4deb86c929717bfb55abd58b7ebc (
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diff --git a/Makefile b/Makefile
index edd2c4a..73b25ea 100644
--- a/Makefile
+++ b/Makefile
@@ -30,8 +30,8 @@ all: $(PROG) $(TEST_PROG)
# Adjust $(HTSDIR) to point to your top-level htslib directory
HTSDIR = htslib-1.4.1
-include $(HTSDIR)/htslib.mk
-include $(HTSDIR)/htslib_static.mk
+#include $(HTSDIR)/htslib.mk
+#include $(HTSDIR)/htslib_static.mk
HTSLIB = $(HTSDIR)/libhts.a
BGZIP = $(HTSDIR)/bgzip
TABIX = $(HTSDIR)/tabix
@@ -73,7 +73,7 @@ GSL_LIBS =
ifdef USE_GPL
EXTRA_CPPFLAGS += -DUSE_GPL
OBJS += polysomy.o peakfit.o
- GSL_LIBS = -lgsl -lcblas
+ GSL_LIBS = -lgsl -lgslcblas
endif
prefix = /usr/local
@@ -217,7 +217,7 @@ test/test-regidx.o: test/test-regidx.c regidx.h
test/test-regidx: test/test-regidx.o regidx.o $(HTSLIB)
$(CC) $(ALL_LDFLAGS) -o $@ $^ $(HTSLIB) -lpthread $(HTSLIB_LIBS) $(ALL_LIBS)
-bcftools: $(HTSLIB) $(OBJS)
+bcftools: $(OBJS)
$(CC) $(ALL_LDFLAGS) -o $@ $(OBJS) $(HTSLIB) -lpthread $(HTSLIB_LIBS) $(GSL_LIBS) $(ALL_LIBS)
doc/bcftools.1: doc/bcftools.txt
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