diff -Naur pigx_scrnaseq-1.1.7/configure.ac pigx_scrnaseq-1.1.7.patched/configure.ac --- pigx_scrnaseq-1.1.7/configure.ac 2020-03-17 14:37:46.000000000 +0100 +++ pigx_scrnaseq-1.1.7.patched/configure.ac 2021-10-06 13:55:49.779271317 +0200 @@ -43,7 +43,6 @@ find_or_override_prog([GNUBASH], [bash]) find_or_override_prog([SNAKEMAKE], [snakemake]) find_or_override_prog([PANDOC], [pandoc]) -find_or_override_prog([PANDOC_CITEPROC], [pandoc-citeproc]) find_or_override_prog([FASTQC], [fastqc]) find_or_override_prog([STAR], [STAR]) find_or_override_prog([SAMTOOLS], [samtools]) diff -Naur pigx_scrnaseq-1.1.7/Makefile.in pigx_scrnaseq-1.1.7.patched/Makefile.in --- pigx_scrnaseq-1.1.7/Makefile.in 2020-11-30 16:55:48.000000000 +0100 +++ pigx_scrnaseq-1.1.7.patched/Makefile.in 2021-10-06 13:55:52.224340194 +0200 @@ -395,7 +395,6 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PANDOC = @PANDOC@ -PANDOC_CITEPROC = @PANDOC_CITEPROC@ PATH_SEPARATOR = @PATH_SEPARATOR@ PERL = @PERL@ PYTHON = @PYTHON@ diff -Naur pigx_scrnaseq-1.1.7/pigx-scrnaseq.in pigx_scrnaseq-1.1.7.patched/pigx-scrnaseq.in --- pigx_scrnaseq-1.1.7/pigx-scrnaseq.in 2020-11-30 16:08:55.000000000 +0100 +++ pigx_scrnaseq-1.1.7.patched/pigx-scrnaseq.in 2021-10-06 13:55:47.889218079 +0200 @@ -274,7 +274,6 @@ if path.exists(bin): shutil.rmtree(bin) os.makedirs(bin, exist_ok=True) os.symlink('@PANDOC@', path.join(bin, "pandoc")) - os.symlink('@PANDOC_CITEPROC@', path.join(bin, "pandoc-citeproc")) os.symlink('@RSCRIPT@', path.join(bin, "Rscript")) os.environ['PATH'] = path.abspath(bin) + ":" + os.environ['PATH'] os.environ['PIGX_PATH'] = path.abspath(bin) + ":" + os.environ['PATH']