diff -Naur pigx_sars-cov2-ww-0.0.3/configure.ac pigx_sars-cov2-ww-0.0.3.patched/configure.ac --- pigx_sars-cov2-ww-0.0.3/configure.ac 2021-06-10 10:12:00.552889984 +0200 +++ pigx_sars-cov2-ww-0.0.3.patched/configure.ac 2021-10-05 14:52:32.318695129 +0200 @@ -50,7 +50,6 @@ find_or_override_prog([MULTIQC], [multiqc]) find_or_override_prog([WGET], [wget]) find_or_override_prog([PANDOC], [pandoc]) -find_or_override_prog([PANDOC_CITEPROC], [pandoc-citeproc]) AC_ARG_ENABLE([r-packages-check], AS_HELP_STRING([--disable-r-packages-check], [Do not check any R packages.]), diff -Naur pigx_sars-cov2-ww-0.0.3/Makefile.in pigx_sars-cov2-ww-0.0.3.patched/Makefile.in --- pigx_sars-cov2-ww-0.0.3/Makefile.in 2021-08-05 16:33:59.164123383 +0200 +++ pigx_sars-cov2-ww-0.0.3.patched/Makefile.in 2021-10-05 14:52:41.272958547 +0200 @@ -402,7 +402,6 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PANDOC = @PANDOC@ -PANDOC_CITEPROC = @PANDOC_CITEPROC@ PATH_SEPARATOR = @PATH_SEPARATOR@ PRINSEQ = @PRINSEQ@ PYTHON = @PYTHON@ diff -Naur pigx_sars-cov2-ww-0.0.3/pigx-common/common/pigx-runner.in pigx_sars-cov2-ww-0.0.3.patched/pigx-common/common/pigx-runner.in --- pigx_sars-cov2-ww-0.0.3/pigx-common/common/pigx-runner.in 2021-07-30 11:10:17.913115902 +0200 +++ pigx_sars-cov2-ww-0.0.3.patched/pigx-common/common/pigx-runner.in 2021-10-05 14:52:23.602438714 +0200 @@ -379,7 +379,6 @@ if path.exists(bin): shutil.rmtree(bin) os.makedirs(bin, exist_ok=True) os.symlink('@PANDOC@', path.join(bin, "pandoc")) - os.symlink('@PANDOC_CITEPROC@', path.join(bin, "pandoc-citeproc")) os.symlink('@RSCRIPT@', path.join(bin, "Rscript")) os.environ['PATH'] = path.abspath(bin) + ":" + os.environ['PATH'] os.environ['PIGX_PATH'] = path.abspath(bin) + ":" + os.environ['PATH']