diff -Naur pigx_chipseq-0.0.53/configure.ac pigx_chipseq-0.0.53.patched/configure.ac --- pigx_chipseq-0.0.53/configure.ac 2021-09-28 11:14:12.000000000 +0200 +++ pigx_chipseq-0.0.53.patched/configure.ac 2021-10-07 14:48:53.034054327 +0200 @@ -52,7 +52,6 @@ find_or_override_prog([MACS2], [macs2]) find_or_override_prog([SNAKEMAKE], [snakemake]) find_or_override_prog([PANDOC], [pandoc]) -find_or_override_prog([PANDOC_CITEPROC], [pandoc-citeproc]) find_or_override_prog([FASTQC], [fastqc]) find_or_override_prog([BOWTIE2], [bowtie2]) find_or_override_prog([BOWTIE2_BUILD], [bowtie2-build]) diff -Naur pigx_chipseq-0.0.53/Makefile.in pigx_chipseq-0.0.53.patched/Makefile.in --- pigx_chipseq-0.0.53/Makefile.in 2021-09-28 11:55:05.000000000 +0200 +++ pigx_chipseq-0.0.53.patched/Makefile.in 2021-10-07 14:48:37.195577143 +0200 @@ -407,7 +407,6 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PANDOC = @PANDOC@ -PANDOC_CITEPROC = @PANDOC_CITEPROC@ PATH_SEPARATOR = @PATH_SEPARATOR@ PERL = @PERL@ PYTHON = @PYTHON@ diff -Naur pigx_chipseq-0.0.53/pigx-common/common/pigx-runner.in pigx_chipseq-0.0.53.patched/pigx-common/common/pigx-runner.in --- pigx_chipseq-0.0.53/pigx-common/common/pigx-runner.in 2021-09-27 18:16:42.000000000 +0200 +++ pigx_chipseq-0.0.53.patched/pigx-common/common/pigx-runner.in 2021-10-07 14:48:44.200788218 +0200 @@ -379,7 +379,6 @@ if path.exists(bin): shutil.rmtree(bin) os.makedirs(bin, exist_ok=True) os.symlink('@PANDOC@', path.join(bin, "pandoc")) - os.symlink('@PANDOC_CITEPROC@', path.join(bin, "pandoc-citeproc")) os.symlink('@RSCRIPT@', path.join(bin, "Rscript")) os.environ['PATH'] = path.abspath(bin) + ":" + os.environ['PATH'] os.environ['PIGX_PATH'] = path.abspath(bin) + ":" + os.environ['PATH']