From 38aca674c3bcd2ace1c6ec79c8b58343c8eea403 Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Fri, 5 Oct 2018 15:22:55 +0200
Subject: gnu: libfilezilla: Update to 0.14.0.

* gnu/packages/ftp.scm (libfilezilla): Update to 0.14.0.
---
 gnu/packages/ftp.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/ftp.scm b/gnu/packages/ftp.scm
index faf9f5dd10..6d89626fe0 100644
--- a/gnu/packages/ftp.scm
+++ b/gnu/packages/ftp.scm
@@ -170,7 +170,7 @@ as required.")
 (define-public libfilezilla
   (package
     (name "libfilezilla")
-    (version "0.13.2")
+    (version "0.14.0")
     (source
      (origin
        (method url-fetch)
@@ -178,7 +178,7 @@ as required.")
                            name "/" name "-" version ".tar.bz2"))
        (sha256
         (base32
-         "0z9cqscca4w94j9npgcknrrw8gfwn5ids903042fczlr977j0i19"))))
+         "15cfz98asypf9rfybv4c6kx8nk3wak7qlm1azldc0gd1nqm4xqvz"))))
     (build-system gnu-build-system)
     (native-inputs
      `(("cppunit" ,cppunit)
-- 
cgit v1.2.3


From 3f904456923d6ba658ccf5f164511478f430afa5 Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Fri, 5 Oct 2018 19:11:28 +0200
Subject: gnu: filezilla: Update to 3.37.4.

* gnu/packages/ftp.scm (filezilla): Update to 3.37.4.
---
 gnu/packages/ftp.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/ftp.scm b/gnu/packages/ftp.scm
index 6d89626fe0..b9c6d209b8 100644
--- a/gnu/packages/ftp.scm
+++ b/gnu/packages/ftp.scm
@@ -207,14 +207,14 @@ output.
 (define-public filezilla
   (package
     (name "filezilla")
-    (version "3.37.1")
+    (version "3.37.4")
     (source
      (origin
        (method url-fetch)
        (uri (string-append "https://download.filezilla-project.org/client/"
                            "FileZilla_" version "_src.tar.bz2"))
        (sha256
-        (base32 "1bbxlm8gc0r5jing8xmkdbhj5a1qfbjn8varhny3mrk1am4m7s7l"))))
+        (base32 "169wy7ilsh518mcinkjmr6m0kzxbzchmc9mivf5c9b4zp1w4gg3i"))))
     (build-system gnu-build-system)
     (arguments
       ;; Don't let filezilla phone home to check for updates.
-- 
cgit v1.2.3


From 8713c03e557114c576c796400300d0dbab4f06c8 Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Thu, 4 Oct 2018 22:16:36 +0200
Subject: gnu: audacity: Don't use unstable tarball.

* gnu/packages/audio.scm (audacity)[source]: Use GIT-FETCH and GIT-FILE-NAME.
---
 gnu/packages/audio.scm | 10 ++++++----
 1 file changed, 6 insertions(+), 4 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/audio.scm b/gnu/packages/audio.scm
index c92b5056d1..434efab953 100644
--- a/gnu/packages/audio.scm
+++ b/gnu/packages/audio.scm
@@ -291,12 +291,14 @@ engineers, musicians, soundtrack editors and composers.")
     (version "2.2.2")
     (source
      (origin
-       (method url-fetch)
-       (uri (string-append "https://github.com/audacity/audacity/archive"
-                           "/Audacity-" version ".tar.gz"))
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/audacity/audacity.git")
+             (commit (string-append "Audacity-" version))))
+       (file-name (git-file-name name version))
        (sha256
         (base32
-         "18q7i77ynihx7xp45lz2lv0k0wrh6736pcrivlpwrxjgbvyqx7km"))
+         "10maxmjxbmjybj7n4m7a9bbm7g8xxw8f8vbsf7c9ih5j2gr15ihs"))
        (patches (search-patches "audacity-build-with-system-portaudio.patch"))
        (modules '((guix build utils)))
        (snippet
-- 
cgit v1.2.3


From b008a12ae78b533c14dd7e88f29df091eca3c0d7 Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Thu, 4 Oct 2018 21:59:55 +0200
Subject: gnu: fdroidserver: Update to 1.0.10.

* gnu/packages/android.scm (fdroidserver): Update to 1.0.10.
---
 gnu/packages/android.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/android.scm b/gnu/packages/android.scm
index 53d7d8d441..9f8d850ff5 100644
--- a/gnu/packages/android.scm
+++ b/gnu/packages/android.scm
@@ -863,14 +863,14 @@ useful for reverse engineering, analysis of Android applications and more.")
 (define-public fdroidserver
   (package
     (name "fdroidserver")
-    (version "1.0.9")
+    (version "1.0.10")
     (source
       (origin
         (method url-fetch)
         (uri (pypi-uri "fdroidserver" version))
         (sha256
          (base32
-          "0cwb1fmindw6v9jkiim9yn3496rk1pvnk94s1r0vz2hxgz16xp7n"))))
+          "0n6kkby65qzqdx1jn72grfffvr1w1j1rby5pwm9z8rymmsh8s0pm"))))
     (build-system python-build-system)
     (arguments
      `(#:phases
-- 
cgit v1.2.3


From fc4738149f5cbaffc8e0b37bfb61e25fac0ecd67 Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Thu, 4 Oct 2018 00:30:53 +0200
Subject: gnu: Add bastet.

* gnu/packages/games.scm (bastet): New public variable.
* gnu/packages/patches/bastet-change-source-of-unordered_set.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
---
 gnu/local.mk                                       |  1 +
 gnu/packages/games.scm                             | 64 ++++++++++++++++++++++
 .../bastet-change-source-of-unordered_set.patch    | 40 ++++++++++++++
 3 files changed, 105 insertions(+)
 create mode 100644 gnu/packages/patches/bastet-change-source-of-unordered_set.patch

(limited to 'gnu')

diff --git a/gnu/local.mk b/gnu/local.mk
index 61e5913a01..8c6579b03f 100644
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@ -591,6 +591,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/awesome-reproducible-png.patch		\
   %D%/packages/patches/azr3.patch				\
   %D%/packages/patches/bash-completion-directories.patch	\
+  %D%/packages/patches/bastet-change-source-of-unordered_set.patch	\
   %D%/packages/patches/bazaar-CVE-2017-14176.patch		\
   %D%/packages/patches/beignet-correct-file-names.patch		\
   %D%/packages/patches/binutils-aarch64-symbol-relocation.patch	\
diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm
index ec92f508bc..7365a7f5d8 100644
--- a/gnu/packages/games.scm
+++ b/gnu/packages/games.scm
@@ -181,6 +181,70 @@ more advanced player there are new game modes and a wide variety of physics
 settings to tweak as well.")
     (license license:gpl2+)))
 
+(define-public bastet
+  (package
+    (name "bastet")
+    (version "0.43.2")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/fph/bastet.git")
+             (commit version)))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "09kamxapm9jw9przpsgjfg33n9k94bccv65w95dakj0br33a75wn"))
+       (patches
+        (search-patches "bastet-change-source-of-unordered_set.patch"))))
+    (build-system gnu-build-system)
+    (arguments
+     `(#:make-flags
+       (list (string-append "CXXFLAGS=-I"
+                            (assoc-ref %build-inputs "boost") "/include"))
+       #:phases
+       (modify-phases %standard-phases
+         (delete 'configure)            ; no configure script
+         (replace 'check
+           ;; The 'Test' target builds the tests, but doesn't actually run them.
+           (lambda* (#:key make-flags #:allow-other-keys)
+             (apply invoke "make" "Test" make-flags)
+             (setenv "HOME" ".")
+             (invoke "./Test")))
+         (replace 'install
+           (lambda* (#:key outputs #:allow-other-keys)
+             (let* ((out     (assoc-ref outputs "out"))
+                    (share   (string-append out "/share"))
+                    (hicolor (string-append share "/icons/hicolor")))
+               (install-file "bastet"
+                             (string-append out "/bin"))
+
+               (install-file "bastet.desktop"
+                             (string-append share "/applications"))
+               (install-file "bastet.svg"
+                             (string-append hicolor "/scalable/apps"))
+
+               (install-file "bastet.appdata.xml"
+                             (string-append share "/appdata"))
+
+               (install-file "bastet.6"
+                             (string-append out "/share/man/man6"))
+               #t))))))
+    (native-inputs
+     `(("hicolor-icon-theme" ,hicolor-icon-theme)))
+    (inputs
+     `(("boost" ,boost)
+       ("ncurses" ,ncurses)))
+    (home-page "http://fph.altervista.org/prog/bastet.html")
+    (synopsis "Antagonistic Tetris-style falling brick game for text terminals")
+    (description
+     "Bastet (short for Bastard Tetris) is a simple ncurses-based falling brick
+game.  Unlike normal Tetris, Bastet does not choose the next brick at random.
+Instead, it uses a special algorithm to choose the worst brick possible.
+
+Playing bastet can be a painful experience, especially if you usually make
+canyons and wait for the long I-shaped block to clear four rows at a time.")
+    (license license:gpl3+)))
+
 (define-public cataclysm-dda
   (let ((commit "ad3b0c3d521292d119f97a83390e7acfe9e9e7f7")
         (revision "1"))
diff --git a/gnu/packages/patches/bastet-change-source-of-unordered_set.patch b/gnu/packages/patches/bastet-change-source-of-unordered_set.patch
new file mode 100644
index 0000000000..ef3970a3e2
--- /dev/null
+++ b/gnu/packages/patches/bastet-change-source-of-unordered_set.patch
@@ -0,0 +1,40 @@
+From: Tobias Geerinckx-Rice <me@tobias.gr>
+Date: Wed, 3 Oct 2018 23:30:42 +0200
+Subject: [PATCH] bastet: Change source of unordered_set.
+
+This allows building bastet 0.43.2 with boost >=1.66.
+It was backported verbatim from the upstream master branch.
+
+From 0e03f8d4d6bc6949cf1c447e632ce0d1b98c4be1 Mon Sep 17 00:00:00 2001
+From: Federico Poloni <fpoloni@di.unipi.it>
+Date: Wed, 4 Oct 2017 19:35:01 +0200
+Subject: [PATCH] Changed source of unordered_set (should hopefully fix #6
+ without reopening #1)
+
+---
+ BastetBlockChooser.hpp | 5 ++---
+ 1 file changed, 2 insertions(+), 3 deletions(-)
+
+diff --git a/BastetBlockChooser.hpp b/BastetBlockChooser.hpp
+index 992e556..7ee3b7c 100644
+--- a/BastetBlockChooser.hpp
++++ b/BastetBlockChooser.hpp
+@@ -23,8 +23,7 @@
+ 
+ #include "Well.hpp"
+ 
+-#include <boost/tr1/tr1/unordered_set>
+-#include <set>
++#include <boost/unordered_set.hpp>
+ #include <boost/functional/hash.hpp>
+ 
+ namespace Bastet{
+@@ -75,7 +74,7 @@ namespace Bastet{
+   public:
+     Searcher(BlockType b, const Well *well, Vertex v, WellVisitor *visitor);
+   private:
+-    std::tr1::unordered_set<Vertex> _visited;
++    boost::unordered_set<Vertex> _visited;
+     //std::set<Vertex> _visited; ^^ the above is more efficient, we need to do many inserts
+     BlockType _block;
+     const Well *_well;
-- 
cgit v1.2.3


From 73ca145a7eee5a4613469956d214880850e63a40 Mon Sep 17 00:00:00 2001
From: Kei Kebreau <kkebreau@posteo.net>
Date: Sun, 16 Sep 2018 22:13:41 -0400
Subject: gnu: gnucash: Update to 3.3.

* gnu/packages/patches/gnucash-disable-failing-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gnucash.scm (gnucash): Update to 3.3.
[source]: Add patch.
[arguments]: Add 'set-env-vars', 'glib-or-gtk-compile-schemas', and
'glib-or-gtk-wrap' phases.
---
 gnu/local.mk                                       |  1 +
 gnu/packages/gnucash.scm                           | 49 +++++++++++++++++-----
 .../patches/gnucash-disable-failing-tests.patch    | 39 +++++++++++++++++
 .../patches/gnucash-price-quotes-perl.patch        |  5 ++-
 4 files changed, 81 insertions(+), 13 deletions(-)
 create mode 100644 gnu/packages/patches/gnucash-disable-failing-tests.patch

(limited to 'gnu')

diff --git a/gnu/local.mk b/gnu/local.mk
index 8c6579b03f..8f854e98b5 100644
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@ -762,6 +762,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/gnome-todo-libical-compat.patch		\
   %D%/packages/patches/gnome-tweak-tool-search-paths.patch	\
   %D%/packages/patches/gnucash-price-quotes-perl.patch		\
+  %D%/packages/patches/gnucash-disable-failing-tests.patch	\
   %D%/packages/patches/gnutls-skip-trust-store-test.patch	\
   %D%/packages/patches/gnutls-skip-pkgconfig-test.patch		\
   %D%/packages/patches/gobject-introspection-absolute-shlib-path.patch \
diff --git a/gnu/packages/gnucash.scm b/gnu/packages/gnucash.scm
index fc8a9b6bfc..45720df9a4 100644
--- a/gnu/packages/gnucash.scm
+++ b/gnu/packages/gnucash.scm
@@ -28,6 +28,7 @@
   #:use-module (guix build-system cmake)
   #:use-module (gnu packages)
   #:use-module (gnu packages autotools)
+  #:use-module (gnu packages base)
   #:use-module (gnu packages boost)
   #:use-module (gnu packages check)
   #:use-module (gnu packages cmake)
@@ -50,7 +51,7 @@
 (define-public gnucash
   (package
     (name "gnucash")
-    (version "3.0")
+    (version "3.3")
     (source
      (origin
       (method url-fetch)
@@ -58,11 +59,9 @@
                           version "/gnucash-" version ".tar.bz2"))
       (sha256
        (base32
-        "1ffvf1rryg5yin86fnf1zvy6hnpwzrjarbdfmjmrf2mqlmv48xac"))
-
-      ;; TODO: rebase this patch
-;      (patches (search-patches "gnucash-price-quotes-perl.patch"))
-      ))
+        "0grr5qi5rn1xvr7qx5d7mcxa2mcgycy2b325ry73bb485a6yv5l3"))
+      (patches (search-patches "gnucash-price-quotes-perl.patch"
+                               "gnucash-disable-failing-tests.patch"))))
     (build-system cmake-build-system)
     (inputs
      `(("guile" ,guile-2.2)
@@ -76,7 +75,8 @@
        ("webkitgtk" ,webkitgtk)
        ("aqbanking" ,aqbanking)
        ("perl-date-manip" ,perl-date-manip)
-       ("perl-finance-quote" ,perl-finance-quote)))
+       ("perl-finance-quote" ,perl-finance-quote)
+       ("tzdata" ,tzdata-for-tests)))
     (native-inputs
      `(("glib" ,glib "bin") ; glib-compile-schemas, etc.
        ("intltool" ,intltool)
@@ -90,6 +90,13 @@
        #:configure-flags
        (list "-DWITH_OFX=OFF"  ; libofx is not available yet
              "-DWITH_SQL=OFF") ; without dbi.h
+       #:make-flags '("GUILE_AUTO_COMPILE=0")
+       #:modules ((guix build cmake-build-system)
+                  ((guix build glib-or-gtk-build-system) #:prefix glib-or-gtk:)
+                  (guix build utils))
+       #:imported-modules (,@%gnu-build-system-modules
+                           (guix build cmake-build-system)
+                           (guix build glib-or-gtk-build-system))
        #:phases
        (modify-phases %standard-phases
          (add-after 'unpack 'unpack-gmock
@@ -99,14 +106,28 @@
                      "-C" "gmock" "--strip-components=1")
              (setenv "GMOCK_ROOT" (string-append (getcwd) "/gmock/googlemock"))
              #t))
+         (add-after 'unpack 'set-env-vars
+           (lambda* (#:key inputs #:allow-other-keys)
+             (let ((tzdata (assoc-ref inputs "tzdata")))
+               ;; At least one test is time-related and requires this
+               ;; environment variable.
+               (setenv "TZDIR"
+                       (string-append tzdata
+                                      "/share/zoneinfo"))
+               (substitute* "CMakeLists.txt"
+                 (("set\\(SHELL /bin/bash\\)")
+                  (string-append "set(SHELL " (which "bash") ")")))
+               #t)))
          ;; There are about 100 megabytes of documentation.
          (add-after
           'install 'install-docs
           (lambda* (#:key inputs outputs #:allow-other-keys)
             (let ((docs (assoc-ref inputs "gnucash-docs"))
                   (doc-output (assoc-ref outputs "doc")))
+              (mkdir-p (string-append doc-output "/share"))
               (symlink (string-append docs "/share/gnome")
-                       (string-append doc-output "/share/gnome")))))
+                       (string-append doc-output "/share/gnome"))
+              #t)))
          (add-after
           'install-docs 'wrap-programs
           (lambda* (#:key inputs outputs #:allow-other-keys)
@@ -134,7 +155,11 @@
                       '("gnucash"
                         "gnc-fq-check"
                         "gnc-fq-helper"
-                        "gnc-fq-dump")))))))
+                        "gnc-fq-dump"))))
+         (add-after 'install 'glib-or-gtk-compile-schemas
+           (assoc-ref glib-or-gtk:%standard-phases 'glib-or-gtk-compile-schemas))
+         (add-after 'install 'glib-or-gtk-wrap
+           (assoc-ref glib-or-gtk:%standard-phases 'glib-or-gtk-wrap)))))
     (home-page "https://www.gnucash.org/")
     (synopsis "Personal and small business financial accounting software")
     (description
@@ -150,7 +175,9 @@ financial calculations or scheduled transactions.")
 (define gnucash-docs
   (package
     (name "gnucash-docs")
-    (version (package-version gnucash))
+    ;;(version (package-version gnucash))
+    ;; The current version of gnucash-docs is not available at the moment.
+    (version "3.2")
     (source
      (origin
        (method url-fetch)
@@ -158,7 +185,7 @@ financial calculations or scheduled transactions.")
                            version "/gnucash-docs-" version ".tar.gz"))
        (sha256
         (base32
-         "0yq65s3z3dwdwdf2nq1d1w9ckdjdyjwkfpmvhzyib54b66q65xh5"))))
+         "1763m6d8gkhllwb9rnr9ifch39brmh7kr2m6icqfbc53a91m56j6"))))
     (build-system gnu-build-system)
     ;; These are native-inputs because they are only required for building the
     ;; documentation.
diff --git a/gnu/packages/patches/gnucash-disable-failing-tests.patch b/gnu/packages/patches/gnucash-disable-failing-tests.patch
new file mode 100644
index 0000000000..e0fdd86b5d
--- /dev/null
+++ b/gnu/packages/patches/gnucash-disable-failing-tests.patch
@@ -0,0 +1,39 @@
+test-stress-options.scm does not exist, and test-qof passes when run in the
+build directory after the gnucash build.
+
+diff -ur gnucash-3.3.old/gnucash/report/standard-reports/test/CMakeLists.txt gnucash-3.3/gnucash/report/standard-reports/test/CMakeLists.txt
+--- gnucash-3.3.old/gnucash/report/standard-reports/test/CMakeLists.txt	2018-10-04 09:29:00.916641417 -0400
++++ gnucash-3.3/gnucash/report/standard-reports/test/CMakeLists.txt	2018-10-04 09:30:52.962504860 -0400
+@@ -13,10 +13,6 @@
+   test-income-gst.scm
+ )
+ 
+-set(scm_test_with_textual_ports_SOURCES
+-    test-stress-options.scm
+-)
+-
+ set(GUILE_DEPENDS
+   scm-gnc-module
+   scm-app-utils
+@@ -31,9 +27,6 @@
+ 
+ if (HAVE_SRFI64)
+   gnc_add_scheme_tests("${scm_test_with_srfi64_SOURCES}")
+-  if (HAVE_TEXT_PORTS)
+-    gnc_add_scheme_tests("${scm_test_with_textual_ports_SOURCES}")
+-  endif (HAVE_TEXT_PORTS)
+ endif (HAVE_SRFI64)
+ 
+ gnc_add_scheme_tests("${scm_test_standard_reports_SOURCES}")
+diff -ur gnucash-3.3.old/libgnucash/engine/test/CMakeLists.txt gnucash-3.3/libgnucash/engine/test/CMakeLists.txt
+--- gnucash-3.3.old/libgnucash/engine/test/CMakeLists.txt	2018-10-04 09:29:00.876640751 -0400
++++ gnucash-3.3/libgnucash/engine/test/CMakeLists.txt	2018-10-05 10:46:22.542962546 -0400
+@@ -54,8 +54,6 @@
+ # This test does not run on Win32
+ if (NOT WIN32)
+   set(SOURCES ${test_qof_SOURCES} ${CMAKE_SOURCE_DIR}/common/test-core/unittest-support.c)
+-  add_engine_test(test-qof "${SOURCES}")
+-  target_compile_definitions(test-qof PRIVATE TESTPROG=test_qof)
+ 
+   set(SOURCES ${test_engine_SOURCES} ${CMAKE_SOURCE_DIR}/common/test-core/unittest-support.c)
+   add_engine_test(test-engine "${SOURCES}")
diff --git a/gnu/packages/patches/gnucash-price-quotes-perl.patch b/gnu/packages/patches/gnucash-price-quotes-perl.patch
index 982763f0ec..3101ddb007 100644
--- a/gnu/packages/patches/gnucash-price-quotes-perl.patch
+++ b/gnu/packages/patches/gnucash-price-quotes-perl.patch
@@ -1,8 +1,9 @@
 After wrapping gnc-fq-check and gnc-fq-helper we can no longer execute them
 with perl, so execute them directly instead.
 
---- gnucash-2.6.6/src/scm/price-quotes.scm.orig	2014-04-27 17:42:28.000000000 -0500
-+++ gnucash-2.6.6/src/scm/price-quotes.scm	2015-07-09 16:12:11.196218472 -0500
+diff -ur gnucash-3.2.old/libgnucash/scm/price-quotes.scm gnucash-3.2/libgnucash/scm/price-quotes.scm
+--- gnucash-3.2.old/libgnucash/scm/price-quotes.scm	2018-09-15 00:48:33.718389646 -0400
++++ gnucash-3.2/libgnucash/scm/price-quotes.scm	2018-09-15 13:51:49.249862724 -0400
 @@ -74,7 +74,7 @@
      (define (start-program)
        (if (not (string-null? gnc:*finance-quote-check*))
-- 
cgit v1.2.3


From b0e829c632c8b0d0d9173c8b0fa457bbc2f92a0f Mon Sep 17 00:00:00 2001
From: Kei Kebreau <kkebreau@posteo.net>
Date: Fri, 5 Oct 2018 13:55:21 -0400
Subject: gnu: gnucash-docs: Update to 3.3.

The documentation on SourceForge is now located in the same directory as the
source code.

* gnu/packages/gnucash.scm (gnucash-docs): Update to 3.3.
---
 gnu/packages/gnucash.scm | 8 +++-----
 1 file changed, 3 insertions(+), 5 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/gnucash.scm b/gnu/packages/gnucash.scm
index 45720df9a4..4e68f20866 100644
--- a/gnu/packages/gnucash.scm
+++ b/gnu/packages/gnucash.scm
@@ -175,17 +175,15 @@ financial calculations or scheduled transactions.")
 (define gnucash-docs
   (package
     (name "gnucash-docs")
-    ;;(version (package-version gnucash))
-    ;; The current version of gnucash-docs is not available at the moment.
-    (version "3.2")
+    (version (package-version gnucash))
     (source
      (origin
        (method url-fetch)
-       (uri (string-append "mirror://sourceforge/gnucash/gnucash-docs/"
+       (uri (string-append "mirror://sourceforge/gnucash/gnucash%20%28stable%29/"
                            version "/gnucash-docs-" version ".tar.gz"))
        (sha256
         (base32
-         "1763m6d8gkhllwb9rnr9ifch39brmh7kr2m6icqfbc53a91m56j6"))))
+         "10v4hw4lh888r8yv473pqrvzfjg8dwamk62sghs93rn88ndwm16c"))))
     (build-system gnu-build-system)
     ;; These are native-inputs because they are only required for building the
     ;; documentation.
-- 
cgit v1.2.3


From 357450dca0933a36a59a23c0e2be5d646f123706 Mon Sep 17 00:00:00 2001
From: Christopher Baines <mail@cbaines.net>
Date: Sat, 29 Sep 2018 11:14:51 +0100
Subject: gnu: bioruby: Update to 1.5.2.

This works with Ruby 2.5.

* gnu/packages/bioinformatics.scm (bioruby): Update to 1.5.2.
---
 gnu/packages/bioinformatics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index d48f484e03..43220d22fe 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -6863,14 +6863,14 @@ generate FASTA, JSON, YAML, RDF, JSON-LD, HTML, CSV, tabular output etc.")
 (define-public bioruby
   (package
     (name "bioruby")
-    (version "1.5.1")
+    (version "1.5.2")
     (source
      (origin
        (method url-fetch)
        (uri (rubygems-uri "bio" version))
        (sha256
         (base32
-         "0hdl0789c9n4mprnx5pgd46bfwl8d000rqpamj5h6kkjgspijv49"))))
+         "1d56amdsjv1mag7m6gv2w0xij8hqx1v5xbdjsix8sp3yp36m7938"))))
     (build-system ruby-build-system)
     (propagated-inputs
      `(("ruby-libxml" ,ruby-libxml)))
-- 
cgit v1.2.3


From 0b060e3486afdefdf5a5f474518b2a6bfae405d9 Mon Sep 17 00:00:00 2001
From: Christopher Baines <mail@cbaines.net>
Date: Sat, 29 Sep 2018 11:15:36 +0100
Subject: gnu: ruby-shindo: Remove -rubygems flags.

These have been removed in Ruby 2.5.

* gnu/packages/ruby.scm (ruby-shindo)[arguments]: Change fix-tests phase to
also remove the -rubygems flags.
---
 gnu/packages/ruby.scm | 15 +++++++++------
 1 file changed, 9 insertions(+), 6 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/ruby.scm b/gnu/packages/ruby.scm
index 3673bf2346..b216f3f48b 100644
--- a/gnu/packages/ruby.scm
+++ b/gnu/packages/ruby.scm
@@ -1211,12 +1211,15 @@ standard output stream.")
        #:phases
        (modify-phases %standard-phases
          (add-after 'unpack 'fix-tests
-          (lambda _
-            (substitute* "Rakefile"
-              (("system \"shindo") "system \"./bin/shindo")
-              ;; This test doesn't work, so we disable it.
-              (("fail \"The build_error test should fail") "#"))
-            #t)))))
+           (lambda _
+             (substitute* "tests/tests_helper.rb"
+               (("-rubygems") ""))
+             (substitute* "Rakefile"
+               (("system \"shindo") "system \"./bin/shindo")
+               ;; This test doesn't work, so we disable it.
+               (("fail \"The build_error test should fail") "#")
+               ((" -rubygems") ""))
+             #t)))))
     (propagated-inputs
      `(("ruby-formatador" ,ruby-formatador)))
     (synopsis "Simple depth first Ruby testing")
-- 
cgit v1.2.3


From 39ecb977d3e097ffe9c46390090bd197581ac072 Mon Sep 17 00:00:00 2001
From: Christopher Baines <mail@cbaines.net>
Date: Sat, 29 Sep 2018 11:17:02 +0100
Subject: gnu: ruby-term-ansicolor: Fix test for Ruby 2.5.

* gnu/packages/ruby.scm (ruby-term-ansicolor)[arguments]: Add new fix-test
phase to fix a test that fails under Ruby 2.5.
---
 gnu/packages/ruby.scm | 5 +++++
 1 file changed, 5 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/ruby.scm b/gnu/packages/ruby.scm
index b216f3f48b..c039df1559 100644
--- a/gnu/packages/ruby.scm
+++ b/gnu/packages/ruby.scm
@@ -2914,6 +2914,11 @@ Ruby's large and slower test/unit.")
     (arguments
      `(#:phases
        (modify-phases %standard-phases
+         (add-after 'unpack 'fix-test
+           (lambda -
+             (substitute* "tests/hsl_triple_test.rb"
+               (("0\\\\\\.0%")
+                "0\\.?0?%"))))
          (replace 'build
           (lambda _
             (invoke "gem" "build" "term-ansicolor.gemspec"))))))
-- 
cgit v1.2.3


From 2c7cb711e938ff9e358ffb274ea2f96ae84fc1e9 Mon Sep 17 00:00:00 2001
From: Christopher Baines <mail@cbaines.net>
Date: Sat, 29 Sep 2018 11:18:54 +0100
Subject: gnu: ruby-sass-spec: Fix spec expectation.

This fixes building ruby-sass with Ruby 2.5.

* gnu/packages/ruby.scm (ruby-sass-spec)[arguments]: Add patch-test phase to
fix the expectation of one of the tests. Also change the comment regarding the
tests not being run.
---
 gnu/packages/ruby.scm | 12 ++++++++++--
 1 file changed, 10 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/ruby.scm b/gnu/packages/ruby.scm
index c039df1559..a0fe0c2e98 100644
--- a/gnu/packages/ruby.scm
+++ b/gnu/packages/ruby.scm
@@ -5456,8 +5456,16 @@ strings or files.")
        ("ruby-diffy" ,ruby-diffy)
        ("ruby-terminfo" ,ruby-terminfo)))
     (arguments
-     ;; No Rakefile
-     `(#:tests? #f))
+     `(;; This package contains tests for a sass implementation, and the to
+       ;; avoid any circular dependencies, the tests are not run here
+       #:tests? #f
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'patch-test
+           (lambda _
+             (delete-file "spec/values/colors/alpha_hex-3.5/error")
+             (substitute* "spec/values/colors/alpha_hex-3.5/expected_output.css"
+               (("string") "color")))))))
     (home-page "https://github.com/sass/sass-spec")
     (synopsis "Test suite for Sass")
     (description "Sass Spec is a test suite for Sass.  Test cases are all in
-- 
cgit v1.2.3


From 4d372cb9a27b57664112b76e6a209b713abd1d10 Mon Sep 17 00:00:00 2001
From: Christopher Baines <mail@cbaines.net>
Date: Sat, 29 Sep 2018 11:28:28 +0100
Subject: gnu: Add ruby-mathn.

* gnu/packages/ruby.scm (ruby-mathn): New variable.
---
 gnu/packages/ruby.scm | 23 +++++++++++++++++++++++
 1 file changed, 23 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/ruby.scm b/gnu/packages/ruby.scm
index a0fe0c2e98..e54b1a0f69 100644
--- a/gnu/packages/ruby.scm
+++ b/gnu/packages/ruby.scm
@@ -5108,6 +5108,29 @@ are doing, you can fiddle with every last bit of your email directly.")
     (home-page "https://github.com/mikel/mail")
     (license license:expat)))
 
+(define-public ruby-mathn
+  (package
+    (name "ruby-mathn")
+    (version "0.1.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (rubygems-uri "mathn" version))
+       (sha256
+        (base32
+         "1wn812llln9jzgybz2d7536q39z3gi99i6fi0j1dapcpzvhgrr0p"))))
+    (build-system ruby-build-system)
+    (native-inputs
+     `(("bundler" ,bundler)
+       ("ruby-rake-compiler" ,ruby-rake-compiler)))
+    (synopsis "Extends math operations for increased precision")
+    (description
+     "This gem makes mathematical operations more precise in Ruby and
+integrates other mathematical standard libraries.  Prior to Ruby 2.5,
+@code{mathn} was part of the Ruby standard library.")
+    (home-page "https://github.com/ruby/mathn")
+    (license license:bsd-2)))
+
 (define-public ruby-code-statistics
   (package
     (name "ruby-code-statistics")
-- 
cgit v1.2.3


From 11ff2adc74f3c168cadb6cc5bf7f4be08442b9ea Mon Sep 17 00:00:00 2001
From: Christopher Baines <mail@cbaines.net>
Date: Sat, 29 Sep 2018 11:29:30 +0100
Subject: gnu: ruby-sass: Update to 3.6.0.

* gnu/packages/ruby.scm (ruby-sass)[version]: Update to 3.6.0.
[source]: Update sha256.
[native-inputs]: Add ruby-mathn, as this is needed when using Ruby 2.5.
---
 gnu/packages/ruby.scm | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/ruby.scm b/gnu/packages/ruby.scm
index e54b1a0f69..2080944cae 100644
--- a/gnu/packages/ruby.scm
+++ b/gnu/packages/ruby.scm
@@ -5498,18 +5498,19 @@ the @file{spec} directory.")
 (define-public ruby-sass
   (package
     (name "ruby-sass")
-    (version "3.5.7")
+    (version "3.6.0")
     (source (origin
               (method url-fetch)
               (uri (rubygems-uri "sass" version))
               (sha256
                (base32
-                "1sy7xsbgpcy90j5ynbq967yplffp74pvph3r8ivn2sv2b44q6i61"))))
+                "18c6prbw9wl8bqhb2435pd9s0lzarl3g7xf8pmyla28zblvwxmyh"))))
     (build-system ruby-build-system)
     (propagated-inputs
      `(("ruby-sass-listen" ,ruby-sass-listen)))
     (native-inputs
-     `(("ruby-sass-spec" ,ruby-sass-spec)))
+     `(("ruby-sass-spec" ,ruby-sass-spec)
+       ("ruby-mathn" ,ruby-mathn)))
     (home-page "http://sass-lang.com/")
     (synopsis "CSS extension language")
     (description "Sass is a CSS extension language.  It extends CSS with
-- 
cgit v1.2.3


From a45c64701b5599bb527fd8cf2070174f9e866d3d Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Tue, 2 Oct 2018 18:28:49 +0200
Subject: gnu: ghc-http-conduit: Remove ghc-http-client from native-inputs.

* gnu/packages/haskell-web.scm (ghc-http-conduit)[native-inputs]: Remove
ghc-http-client.
---
 gnu/packages/haskell-web.scm | 1 -
 1 file changed, 1 deletion(-)

(limited to 'gnu')

diff --git a/gnu/packages/haskell-web.scm b/gnu/packages/haskell-web.scm
index eaa7e6a9ec..2e404e2fcf 100644
--- a/gnu/packages/haskell-web.scm
+++ b/gnu/packages/haskell-web.scm
@@ -369,7 +369,6 @@ and HPACK.  Currently HTTP/2 16 framing and HPACK 10 is supported.")
        ("ghc-warp" ,ghc-warp)
        ("ghc-wai-conduit" ,ghc-wai-conduit)
        ("ghc-http-types" ,ghc-http-types)
-       ("ghc-http-client" ,ghc-http-client)
        ("ghc-cookie" ,ghc-cookie)
        ("ghc-conduit-extra" ,ghc-conduit-extra)
        ("ghc-streaming-commons" ,ghc-streaming-commons)
-- 
cgit v1.2.3


From 279c97dba8ceecab9d1c7a5c8b5503d1c2e605a3 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Tue, 2 Oct 2018 18:28:50 +0200
Subject: gnu: ghc-regex: Fix build.

* gnu/packages/haskell.scm (ghc-regex)[arguments]: Add build phase to relax
version checks.
---
 gnu/packages/haskell.scm | 11 +++++++++++
 1 file changed, 11 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/haskell.scm b/gnu/packages/haskell.scm
index a140985eba..c8e4523ebd 100644
--- a/gnu/packages/haskell.scm
+++ b/gnu/packages/haskell.scm
@@ -3003,6 +3003,17 @@ Haskell library @code{regex-base}.")
         (base32
          "1sjkpkgv4phy5b5v2lr89x4vx4dh44pj0sbvlsp6n86w9v6v4jwb"))))
     (build-system haskell-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'relax-dependencies
+           (lambda _
+             (substitute* "regex.cabal"
+               (("base-compat.*>=.*0.6.*")
+                "base-compat >= 0.6\n")
+               (("template-haskell.*>=.*2.7.*")
+                "template-haskell >= 2.7\n"))
+             #t)))))
     (inputs
      `(("ghc-base-compat" ,ghc-base-compat)
        ("ghc-hashable" ,ghc-hashable)
-- 
cgit v1.2.3


From 7df25c77c5d57d127e556b6527b69abce82ef814 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Tue, 2 Oct 2018 18:28:51 +0200
Subject: gnu: Add ghc-cairo.

* gnu/packages/haskell.scm (ghc-cairo): New variable.
---
 gnu/packages/haskell.scm | 77 ++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 77 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/haskell.scm b/gnu/packages/haskell.scm
index c8e4523ebd..964b14749f 100644
--- a/gnu/packages/haskell.scm
+++ b/gnu/packages/haskell.scm
@@ -43,6 +43,7 @@
   #:use-module (gnu packages ghostscript)
   #:use-module (gnu packages gl)
   #:use-module (gnu packages graphviz)
+  #:use-module (gnu packages gtk)
   #:use-module (gnu packages haskell-check)
   #:use-module (gnu packages haskell-crypto)
   #:use-module (gnu packages haskell-web)
@@ -10587,6 +10588,82 @@ expose it from another module in the hierarchy.
 @end itemize")
     (license license:expat)))
 
+(define-public ghc-cairo
+  (package
+    (name "ghc-cairo")
+    (version "0.13.5.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/cairo/"
+                           "cairo-" version ".tar.gz"))
+       (sha256
+        (base32
+         "1wxylv4d8120ri0vgar168ikqa9m6533ipdwi38qlmxmw20ws2j2"))))
+    (build-system haskell-build-system)
+    (arguments
+     `(#:modules ((guix build haskell-build-system)
+                  (guix build utils)
+                  (ice-9 match)
+                  (srfi srfi-26))
+       #:phases
+       (modify-phases %standard-phases
+         ;; FIXME: This is a copy of the standard configure phase with a tiny
+         ;; difference: this package needs the -package-db flag to be passed
+         ;; to "runhaskell" in addition to the "configure" action, because it
+         ;; depends on gtk2hs-buildtools, which provide setup hooks.  Without
+         ;; this option the Setup.hs file cannot be evaluated.  The
+         ;; haskell-build-system should be changed to pass "-package-db" to
+         ;; "runhaskell" in any case.
+         (replace 'configure
+           (lambda* (#:key outputs inputs tests? (configure-flags '())
+                     #:allow-other-keys)
+             (let* ((out (assoc-ref outputs "out"))
+                    (input-dirs (match inputs
+                                  (((_ . dir) ...)
+                                   dir)
+                                  (_ '())))
+                    (ghc-path (getenv "GHC_PACKAGE_PATH"))
+                    (params (append `(,(string-append "--prefix=" out))
+                                    `(,(string-append "--libdir=" out "/lib"))
+                                    `(,(string-append "--bindir=" out "/bin"))
+                                    `(,(string-append
+                                        "--docdir=" out
+                                        "/share/doc/" ((@@ (guix build haskell-build-system)
+                                                           package-name-version) out)))
+                                    '("--libsubdir=$compiler/$pkg-$version")
+                                    '("--package-db=../package.conf.d")
+                                    '("--global")
+                                    `(,@(map
+                                         (cut string-append "--extra-include-dirs=" <>)
+                                         (search-path-as-list '("include") input-dirs)))
+                                    `(,@(map
+                                         (cut string-append "--extra-lib-dirs=" <>)
+                                         (search-path-as-list '("lib") input-dirs)))
+                                    (if tests?
+                                        '("--enable-tests")
+                                        '())
+                                    configure-flags)))
+               (unsetenv "GHC_PACKAGE_PATH")
+               (apply invoke "runhaskell" "-package-db=../package.conf.d"
+                      "Setup.hs" "configure" params)
+               (setenv "GHC_PACKAGE_PATH" ghc-path)
+               #t))))))
+    (inputs
+     `(("ghc-utf8-string" ,ghc-utf8-string)
+       ("ghc-text" ,ghc-text)
+       ("cairo" ,cairo)))
+    (native-inputs
+     `(("ghc-gtk2hs-buildtools" ,ghc-gtk2hs-buildtools)
+       ("pkg-config" ,pkg-config)))
+    (home-page "http://projects.haskell.org/gtk2hs/")
+    (synopsis "Haskell bindings to the Cairo vector graphics library")
+    (description
+     "Cairo is a library to render high quality vector graphics.  There exist
+various backends that allows rendering to Gtk windows, PDF, PS, PNG and SVG
+documents, amongst others.")
+    (license license:bsd-3)))
+
 (define-public ghc-weigh
   (package
     (name "ghc-weigh")
-- 
cgit v1.2.3


From 562cfae330e2b8382ab106478514d833187c7d15 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Tue, 2 Oct 2018 18:28:52 +0200
Subject: gnu: Add ghc-chart-cairo.

* gnu/packages/haskell.scm (ghc-chart-cairo): New variable.
---
 gnu/packages/haskell.scm | 27 +++++++++++++++++++++++++++
 1 file changed, 27 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/haskell.scm b/gnu/packages/haskell.scm
index 964b14749f..c040965e92 100644
--- a/gnu/packages/haskell.scm
+++ b/gnu/packages/haskell.scm
@@ -10664,6 +10664,33 @@ various backends that allows rendering to Gtk windows, PDF, PS, PNG and SVG
 documents, amongst others.")
     (license license:bsd-3)))
 
+(define-public ghc-chart-cairo
+  (package
+    (name "ghc-chart-cairo")
+    (version "1.9")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/Chart-cairo/"
+                           "Chart-cairo-" version ".tar.gz"))
+       (sha256
+        (base32
+         "0iany6lfyfb1cw0pxfs5aw5k0a6x41m6ql9ad9w59biwdckbsyqr"))))
+    (build-system haskell-build-system)
+    (inputs
+     `(("ghc-old-locale" ,ghc-old-locale)
+       ("ghc-cairo" ,ghc-cairo)
+       ("ghc-colour" ,ghc-colour)
+       ("ghc-data-default-class" ,ghc-data-default-class)
+       ("ghc-operational" ,ghc-operational)
+       ("ghc-lens" ,ghc-lens)
+       ("ghc-chart" ,ghc-chart)))
+    (home-page "https://github.com/timbod7/haskell-chart/wiki")
+    (synopsis "Cairo backend for Charts")
+    (description "This package provides a Cairo vector graphics rendering
+backend for the Charts library.")
+    (license license:bsd-3)))
+
 (define-public ghc-weigh
   (package
     (name "ghc-weigh")
-- 
cgit v1.2.3


From 6c8197783dca26159a669202a0635af0338d4992 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Tue, 2 Oct 2018 18:10:15 +0200
Subject: gnu: Add ghc-atomic-write.

* gnu/packages/haskell.scm (ghc-atomic-write): New variable.
---
 gnu/packages/haskell.scm | 35 +++++++++++++++++++++++++++++++++++
 1 file changed, 35 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/haskell.scm b/gnu/packages/haskell.scm
index c040965e92..c1815c60da 100644
--- a/gnu/packages/haskell.scm
+++ b/gnu/packages/haskell.scm
@@ -10691,6 +10691,41 @@ documents, amongst others.")
 backend for the Charts library.")
     (license license:bsd-3)))
 
+(define-public ghc-atomic-write
+  (package
+    (name "ghc-atomic-write")
+    (version "0.2.0.5")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append
+             "https://hackage.haskell.org/package/atomic-write/atomic-write-"
+             version
+             ".tar.gz"))
+       (sha256
+        (base32
+         "1iaq0hprxcv0sl1sgwcgmm87zraf738va1bciwnx2jkk3k1v9iyv"))))
+    (build-system haskell-build-system)
+    (inputs
+     `(("ghc-temporary" ,ghc-temporary)
+       ("ghc-unix-compat" ,ghc-unix-compat)
+       ("ghc-text" ,ghc-text)))
+    (native-inputs
+     `(("ghc-temporary" ,ghc-temporary)
+       ("ghc-unix-compat" ,ghc-unix-compat)
+       ("ghc-text" ,ghc-text)
+       ("ghc-hspec" ,ghc-hspec)
+       ("hspec-discover" ,hspec-discover)))
+    (home-page "https://github.com/stackbuilders/atomic-write")
+    (synopsis "Atomically write to a file")
+    (description
+     "Atomically write to a file on POSIX-compliant systems while preserving
+permissions.  @code{mv} is an atomic operation.  This makes it simple to write
+to a file atomically just by using the @code{mv} operation.  However, this
+will destroy the permissions on the original file.  This library preserves
+permissions while atomically writing to a file.")
+    (license license:expat)))
+
 (define-public ghc-weigh
   (package
     (name "ghc-weigh")
-- 
cgit v1.2.3


From d05ed20ef12e5c9520252f2da230c54f46de703d Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Tue, 2 Oct 2018 18:32:38 +0200
Subject: gnu: Add ghc-cereal-conduit.

* gnu/packages/haskell.scm (ghc-cereal-conduit): New variable.
---
 gnu/packages/haskell.scm | 27 +++++++++++++++++++++++++++
 1 file changed, 27 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/haskell.scm b/gnu/packages/haskell.scm
index c1815c60da..a8d22a682a 100644
--- a/gnu/packages/haskell.scm
+++ b/gnu/packages/haskell.scm
@@ -10726,6 +10726,33 @@ will destroy the permissions on the original file.  This library preserves
 permissions while atomically writing to a file.")
     (license license:expat)))
 
+(define-public ghc-cereal-conduit
+  (package
+    (name "ghc-cereal-conduit")
+    (version "0.8.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/"
+                           "cereal-conduit/cereal-conduit-"
+                           version ".tar.gz"))
+       (sha256
+        (base32
+         "1srr7agvgfw78q5s1npjq5sgynvhjgllpihiv37ylkwqm4c4ap6r"))))
+    (build-system haskell-build-system)
+    (inputs
+     `(("ghc-conduit" ,ghc-conduit)
+       ("ghc-resourcet" ,ghc-resourcet)
+       ("ghc-cereal" ,ghc-cereal)))
+    (native-inputs
+     `(("ghc-hunit" ,ghc-hunit)))
+    (home-page "https://github.com/snoyberg/conduit")
+    (synopsis "Turn Data.Serialize Gets and Puts into Sources, Sinks, and Conduits")
+    (description
+     "This package turn @code{Data.Serialize} @code{Gets} and @code{Puts} into
+@code{Sources}, @code{Sinks}, and @code{Conduits}.")
+    (license license:bsd-3)))
+
 (define-public ghc-weigh
   (package
     (name "ghc-weigh")
-- 
cgit v1.2.3


From 36ec599e785ba3563ede377e05e8172c4323a2aa Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Tue, 2 Oct 2018 18:32:40 +0200
Subject: gnu: Add ghc-lzma.

* gnu/packages/haskell.scm (ghc-lzma): New variable.
---
 gnu/packages/haskell.scm | 31 +++++++++++++++++++++++++++++++
 1 file changed, 31 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/haskell.scm b/gnu/packages/haskell.scm
index a8d22a682a..3e10398966 100644
--- a/gnu/packages/haskell.scm
+++ b/gnu/packages/haskell.scm
@@ -10753,6 +10753,37 @@ permissions while atomically writing to a file.")
 @code{Sources}, @code{Sinks}, and @code{Conduits}.")
     (license license:bsd-3)))
 
+(define-public ghc-lzma
+  (package
+    (name "ghc-lzma")
+    (version "0.0.0.3")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/lzma/"
+                           "lzma-" version ".tar.gz"))
+       (sha256
+        (base32
+         "0i416gqi8j55nd1pqbkxvf3f6hn6fjys6gq98lkkxphva71j30xg"))))
+    (build-system haskell-build-system)
+    (arguments
+     '(#:tests? #f ; requires older versions of QuickCheck and tasty.
+       #:cabal-revision
+       ("3" "1sify6gnsalyp6dakfzi0mdy5jcz2kcp9jsdsgkmxd40nfzgd44m")))
+    (native-inputs
+     `(("ghc-hunit" ,ghc-hunit)
+       ("ghc-quickcheck" ,ghc-quickcheck)
+       ("ghc-tasty" ,ghc-tasty)
+       ("ghc-tasty-hunit" ,ghc-tasty-hunit)
+       ("ghc-tasty-quickcheck" ,ghc-tasty-quickcheck)))
+    (home-page "https://github.com/hvr/lzma")
+    (synopsis "LZMA/XZ compression and decompression")
+    (description
+     "This package provides a pure interface for compressing and
+decompressing LZMA streams of data represented as lazy @code{ByteString}s.  A
+monadic incremental interface is provided as well.")
+    (license license:bsd-3)))
+
 (define-public ghc-weigh
   (package
     (name "ghc-weigh")
-- 
cgit v1.2.3


From 80588cfccfd193d70491bb2a386667bf538dbb5d Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Tue, 2 Oct 2018 18:32:42 +0200
Subject: gnu: Add ghc-stm-conduit.

* gnu/packages/haskell.scm (ghc-stm-conduit): New variable.
---
 gnu/packages/haskell.scm | 39 +++++++++++++++++++++++++++++++++++++++
 1 file changed, 39 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/haskell.scm b/gnu/packages/haskell.scm
index 3e10398966..d2f6a8b237 100644
--- a/gnu/packages/haskell.scm
+++ b/gnu/packages/haskell.scm
@@ -10784,6 +10784,45 @@ decompressing LZMA streams of data represented as lazy @code{ByteString}s.  A
 monadic incremental interface is provided as well.")
     (license license:bsd-3)))
 
+(define-public ghc-stm-conduit
+  (package
+    (name "ghc-stm-conduit")
+    (version "4.0.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/stm-conduit/"
+                           "stm-conduit-" version ".tar.gz"))
+       (sha256
+        (base32
+         "0paapljn7nqfzrx889y0n8sszci38mdiaxkgr0bb00ph9246rr7z"))))
+    (build-system haskell-build-system)
+    (inputs
+     `(("ghc-stm" ,ghc-stm)
+       ("ghc-stm-chans" ,ghc-stm-chans)
+       ("ghc-cereal" ,ghc-cereal)
+       ("ghc-cereal-conduit" ,ghc-cereal-conduit)
+       ("ghc-conduit" ,ghc-conduit)
+       ("ghc-conduit-extra" ,ghc-conduit-extra)
+       ("ghc-exceptions" ,ghc-exceptions)
+       ("ghc-resourcet" ,ghc-resourcet)
+       ("ghc-async" ,ghc-async)
+       ("ghc-monad-loops" ,ghc-monad-loops)
+       ("ghc-unliftio" ,ghc-unliftio)))
+    (native-inputs
+     `(("ghc-doctest" ,ghc-doctest)
+       ("ghc-quickcheck" ,ghc-quickcheck)
+       ("ghc-hunit" ,ghc-hunit)
+       ("ghc-test-framework" ,ghc-test-framework)
+       ("ghc-test-framework-hunit" ,ghc-test-framework-hunit)
+       ("ghc-test-framework-quickcheck2" ,ghc-test-framework-quickcheck2)))
+    (home-page "https://github.com/cgaebel/stm-conduit")
+    (synopsis "Introduces conduits to channels and promotes using conduits concurrently")
+    (description
+     "This package provides two simple conduit wrappers around STM channels: a
+source and a sink.")
+    (license license:bsd-3)))
+
 (define-public ghc-weigh
   (package
     (name "ghc-weigh")
-- 
cgit v1.2.3


From 38757d610eedad4dfa4030841132c028460b6c84 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Tue, 2 Oct 2018 18:32:44 +0200
Subject: gnu: Add ghc-bindings-dsl.

* gnu/packages/haskell.scm (ghc-bindings-dsl): New variable.
---
 gnu/packages/haskell.scm | 25 +++++++++++++++++++++++++
 1 file changed, 25 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/haskell.scm b/gnu/packages/haskell.scm
index d2f6a8b237..41b1146040 100644
--- a/gnu/packages/haskell.scm
+++ b/gnu/packages/haskell.scm
@@ -10823,6 +10823,31 @@ monadic incremental interface is provided as well.")
 source and a sink.")
     (license license:bsd-3)))
 
+(define-public ghc-bindings-dsl
+  (package
+    (name "ghc-bindings-dsl")
+    (version "1.0.25")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/bindings-DSL/"
+                           "bindings-DSL-" version ".tar.gz"))
+       (sha256
+        (base32
+         "0kqrd78nspl3lk4a0fqn47d8dirjg3b24dkvkigcrlb81hw35pk3"))))
+    (build-system haskell-build-system)
+    (home-page "https://github.com/jwiegley/bindings-dsl/wiki")
+    (synopsis "FFI domain specific language, on top of hsc2hs")
+    (description
+     "This is a set of macros to be used when writing Haskell FFI.  They were
+designed to be able to fully describe C interfaces, so that @code{hsc2hs} can
+extract from them all Haskell code needed to mimic such interfaces.  All
+Haskell names used are automatically derived from C names, structures are
+mapped to Haskell instances of @code{Storable}, and there are also macros you
+can use with C code to help write bindings to inline functions or macro
+functions.")
+    (license license:bsd-3)))
+
 (define-public ghc-weigh
   (package
     (name "ghc-weigh")
-- 
cgit v1.2.3


From 44c6180b3fc76f5e015a1b7097eb7a3196210be8 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Tue, 2 Oct 2018 18:32:46 +0200
Subject: gnu: Add ghc-lzma-conduit.

* gnu/packages/haskell.scm (ghc-lzma-conduit): New variable.
---
 gnu/packages/haskell.scm | 31 +++++++++++++++++++++++++++++++
 1 file changed, 31 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/haskell.scm b/gnu/packages/haskell.scm
index 41b1146040..4ebaecbd86 100644
--- a/gnu/packages/haskell.scm
+++ b/gnu/packages/haskell.scm
@@ -10848,6 +10848,37 @@ can use with C code to help write bindings to inline functions or macro
 functions.")
     (license license:bsd-3)))
 
+(define-public ghc-lzma-conduit
+  (package
+    (name "ghc-lzma-conduit")
+    (version "1.2.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/lzma-conduit/"
+                           "lzma-conduit-" version ".tar.gz"))
+       (sha256
+        (base32
+         "0hm72da7xk9l3zxjh274yg444vf405djxqbkf3q3p2qhicmxlmg9"))))
+    (build-system haskell-build-system)
+    (inputs
+     `(("ghc-conduit" ,ghc-conduit)
+       ("ghc-lzma" ,ghc-lzma)
+       ("ghc-resourcet" ,ghc-resourcet)))
+    (native-inputs
+     `(("ghc-base-compat" ,ghc-base-compat)
+       ("ghc-test-framework" ,ghc-test-framework)
+       ("ghc-test-framework-hunit" ,ghc-test-framework-hunit)
+       ("ghc-test-framework-quickcheck2" ,ghc-test-framework-quickcheck2)
+       ("ghc-hunit" ,ghc-hunit)
+       ("ghc-quickcheck" ,ghc-quickcheck)))
+    (home-page "https://github.com/alphaHeavy/lzma-conduit")
+    (synopsis "Conduit interface for lzma/xz compression")
+    (description
+     "This package provides a @code{Conduit} interface for the LZMA
+compression algorithm used in the @code{.xz} file format.")
+    (license license:bsd-3)))
+
 (define-public ghc-weigh
   (package
     (name "ghc-weigh")
-- 
cgit v1.2.3


From 4fc161b9c60163f8353648a8e6e00d8229362ff4 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Tue, 2 Oct 2018 18:32:48 +0200
Subject: gnu: Add ghc-bzlib-conduit.

* gnu/packages/haskell.scm (ghc-bzlib-conduit): New variable.
---
 gnu/packages/haskell.scm | 28 ++++++++++++++++++++++++++++
 1 file changed, 28 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/haskell.scm b/gnu/packages/haskell.scm
index 4ebaecbd86..d79329f686 100644
--- a/gnu/packages/haskell.scm
+++ b/gnu/packages/haskell.scm
@@ -10879,6 +10879,34 @@ functions.")
 compression algorithm used in the @code{.xz} file format.")
     (license license:bsd-3)))
 
+(define-public ghc-bzlib-conduit
+  (package
+    (name "ghc-bzlib-conduit")
+    (version "0.3.0.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/bzlib-conduit/"
+                           "bzlib-conduit-" version ".tar.gz"))
+       (sha256
+        (base32
+         "0fd2hnr782s7qgipazg2yxwia9qqhkvm9bcm90773c3zkxa13n23"))))
+    (build-system haskell-build-system)
+    (inputs
+     `(("ghc-bindings-dsl" ,ghc-bindings-dsl)
+       ("ghc-conduit" ,ghc-conduit)
+       ("ghc-data-default-class" ,ghc-data-default-class)
+       ("ghc-resourcet" ,ghc-resourcet)))
+    (native-inputs
+     `(("ghc-hspec" ,ghc-hspec)
+       ("ghc-random" ,ghc-random)))
+    (home-page "https://github.com/snoyberg/bzlib-conduit")
+    (synopsis "Streaming compression/decompression via conduits")
+    (description
+     "This package provides Haskell bindings to bzlib and Conduit support for
+streaming compression and decompression.")
+    (license license:bsd-3)))
+
 (define-public ghc-weigh
   (package
     (name "ghc-weigh")
-- 
cgit v1.2.3


From 71c2e3e1a1a0416e6d09eee2691cf4c0decd9be5 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Tue, 2 Oct 2018 18:32:50 +0200
Subject: gnu: Add ghc-pqueue.

* gnu/packages/haskell.scm (ghc-pqueue): New variable.
---
 gnu/packages/haskell.scm | 22 ++++++++++++++++++++++
 1 file changed, 22 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/haskell.scm b/gnu/packages/haskell.scm
index d79329f686..80d331c466 100644
--- a/gnu/packages/haskell.scm
+++ b/gnu/packages/haskell.scm
@@ -10907,6 +10907,28 @@ compression algorithm used in the @code{.xz} file format.")
 streaming compression and decompression.")
     (license license:bsd-3)))
 
+(define-public ghc-pqueue
+  (package
+    (name "ghc-pqueue")
+    (version "1.4.1.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/"
+                           "pqueue/pqueue-" version ".tar.gz"))
+       (sha256
+        (base32
+         "1zvwm1zcqqq5n101s1brjhgbay8rf9fviq6gxbplf40i63m57p1x"))))
+    (build-system haskell-build-system)
+    (native-inputs
+     `(("ghc-quickcheck" ,ghc-quickcheck)))
+    (home-page "https://hackage.haskell.org/package/pqueue")
+    (synopsis "Reliable, persistent, fast priority queues")
+    (description
+     "This package provides a fast, reliable priority queue implementation
+based on a binomial heap.")
+    (license license:bsd-3)))
+
 (define-public ghc-weigh
   (package
     (name "ghc-weigh")
-- 
cgit v1.2.3


From a933cbfb617d84d37e270b4dd89f2de92013834d Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Tue, 2 Oct 2018 18:32:52 +0200
Subject: gnu: Add ghc-conduit-algorithms.

* gnu/packages/haskell.scm (ghc-conduit-algorithms): New variable.
---
 gnu/packages/haskell.scm | 42 ++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 42 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/haskell.scm b/gnu/packages/haskell.scm
index 80d331c466..befb1baae5 100644
--- a/gnu/packages/haskell.scm
+++ b/gnu/packages/haskell.scm
@@ -10929,6 +10929,48 @@ streaming compression and decompression.")
 based on a binomial heap.")
     (license license:bsd-3)))
 
+(define-public ghc-conduit-algorithms
+  (package
+    (name "ghc-conduit-algorithms")
+    (version "0.0.8.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/"
+                           "conduit-algorithms/conduit-algorithms-"
+                           version ".tar.gz"))
+       (sha256
+        (base32
+         "07gx2q3d1bbfw14q41rmqg0i4m018pci10lswc0k1ij6lw7sb9fd"))))
+    (build-system haskell-build-system)
+    (inputs
+     `(("ghc-async" ,ghc-async)
+       ("ghc-bzlib-conduit" ,ghc-bzlib-conduit)
+       ("ghc-conduit" ,ghc-conduit)
+       ("ghc-conduit-combinators" ,ghc-conduit-combinators)
+       ("ghc-conduit-extra" ,ghc-conduit-extra)
+       ("ghc-exceptions" ,ghc-exceptions)
+       ("ghc-lzma-conduit" ,ghc-lzma-conduit)
+       ("ghc-monad-control" ,ghc-monad-control)
+       ("ghc-pqueue" ,ghc-pqueue)
+       ("ghc-resourcet" ,ghc-resourcet)
+       ("ghc-stm" ,ghc-stm)
+       ("ghc-stm-conduit" ,ghc-stm-conduit)
+       ("ghc-streaming-commons" ,ghc-streaming-commons)
+       ("ghc-unliftio-core" ,ghc-unliftio-core)
+       ("ghc-vector" ,ghc-vector)))
+    (native-inputs
+     `(("ghc-hunit" ,ghc-hunit)
+       ("ghc-test-framework" ,ghc-test-framework)
+       ("ghc-test-framework-hunit" ,ghc-test-framework-hunit)
+       ("ghc-test-framework-th" ,ghc-test-framework-th)))
+    (home-page "https://github.com/luispedro/conduit-algorithms#readme")
+    (synopsis "Conduit-based algorithms")
+    (description
+     "This package provides algorithms on @code{Conduits}, including higher
+level asynchronous processing and some other utilities.")
+    (license license:expat)))
+
 (define-public ghc-weigh
   (package
     (name "ghc-weigh")
-- 
cgit v1.2.3


From 320323141f697483277918f411ecc62a8a7ab85d Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Tue, 2 Oct 2018 18:32:54 +0200
Subject: gnu: Add ghc-interpolate.

* gnu/packages/haskell.scm (ghc-interpolate): New variable.
---
 gnu/packages/haskell.scm | 28 ++++++++++++++++++++++++++++
 1 file changed, 28 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/haskell.scm b/gnu/packages/haskell.scm
index befb1baae5..8a33cbd6b2 100644
--- a/gnu/packages/haskell.scm
+++ b/gnu/packages/haskell.scm
@@ -10971,6 +10971,34 @@ based on a binomial heap.")
 level asynchronous processing and some other utilities.")
     (license license:expat)))
 
+(define-public ghc-interpolate
+  (package
+    (name "ghc-interpolate")
+    (version "0.2.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/interpolate/"
+                           "interpolate-" version ".tar.gz"))
+       (sha256
+        (base32
+         "1gkaj98yz363v38fv78sqby236mp8yqwqcilx7kr2b9z0w3204bf"))))
+    (build-system haskell-build-system)
+    (inputs
+     `(("ghc-haskell-src-meta" ,ghc-haskell-src-meta)))
+    (native-inputs
+     `(("ghc-base-compat" ,ghc-base-compat)
+       ("ghc-hspec" ,ghc-hspec)
+       ("ghc-quickcheck" ,ghc-quickcheck)
+       ("ghc-quickcheck-instances" ,ghc-quickcheck-instances)
+       ("ghc-text" ,ghc-text)
+       ("hspec-discover" ,hspec-discover)))
+    (home-page "https://github.com/sol/interpolate")
+    (synopsis "String interpolation library")
+    (description "This package provides a string interpolation library for
+Haskell.")
+    (license license:expat)))
+
 (define-public ghc-weigh
   (package
     (name "ghc-weigh")
-- 
cgit v1.2.3


From 5e6bf3e2da6934daeadc36afeb8e09f105754efe Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Tue, 2 Oct 2018 18:15:04 +0200
Subject: gnu: Add ghc-hpack.

* gnu/packages/haskell.scm (ghc-hpack): New variable.
---
 gnu/packages/haskell.scm | 45 +++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 45 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/haskell.scm b/gnu/packages/haskell.scm
index 8a33cbd6b2..9a5f7c9746 100644
--- a/gnu/packages/haskell.scm
+++ b/gnu/packages/haskell.scm
@@ -10999,6 +10999,51 @@ level asynchronous processing and some other utilities.")
 Haskell.")
     (license license:expat)))
 
+(define-public ghc-hpack
+  (package
+    (name "ghc-hpack")
+    (version "0.28.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/hpack/"
+                           "hpack-" version ".tar.gz"))
+       (sha256
+        (base32
+         "18w0h76jdp3mk9vin8da9iz3cwhcxmw787xy8wlh8bxcpcr16q5r"))))
+    (build-system haskell-build-system)
+    (inputs
+     `(("ghc-aeson" ,ghc-aeson)
+       ("ghc-bifunctors" ,ghc-bifunctors)
+       ("ghc-cryptonite" ,ghc-cryptonite)
+       ("ghc-glob" ,ghc-glob)
+       ("ghc-http-client" ,ghc-http-client)
+       ("ghc-http-client-tls" ,ghc-http-client-tls)
+       ("ghc-http-types" ,ghc-http-types)
+       ("ghc-scientific" ,ghc-scientific)
+       ("ghc-text" ,ghc-text)
+       ("ghc-unordered-containers" ,ghc-unordered-containers)
+       ("ghc-vector" ,ghc-vector)
+       ("ghc-yaml" ,ghc-yaml)))
+    (native-inputs
+     `(("ghc-hspec" ,ghc-hspec)
+       ("ghc-hunit" ,ghc-hunit)
+       ("ghc-interpolate" ,ghc-interpolate)
+       ("ghc-mockery" ,ghc-mockery)
+       ("ghc-quickcheck" ,ghc-quickcheck)
+       ("ghc-temporary" ,ghc-temporary)
+       ("hspec-discover" ,hspec-discover)))
+    (home-page "https://github.com/sol/hpack")
+    (synopsis "Tools for an alternative Haskell package format")
+    (description
+     "Hpack is a format for Haskell packages.  It is an alternative to the
+Cabal package format and follows different design principles.  Hpack packages
+are described in a file named @code{package.yaml}.  Both @code{cabal2nix} and
+@code{stack} support @code{package.yaml} natively.  For other build tools the
+@code{hpack} executable can be used to generate a @code{.cabal} file from
+@code{package.yaml}.")
+    (license license:expat)))
+
 (define-public ghc-weigh
   (package
     (name "ghc-weigh")
-- 
cgit v1.2.3


From 52f5114d016688fb143079056a64b8abfb319507 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Tue, 2 Oct 2018 18:37:58 +0200
Subject: gnu: Add ghc-raw-string-qq.

* gnu/packages/haskell.scm (ghc-raw-string-qq): New variable.
---
 gnu/packages/haskell.scm | 25 +++++++++++++++++++++++++
 1 file changed, 25 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/haskell.scm b/gnu/packages/haskell.scm
index 9a5f7c9746..6b8a4ee3fc 100644
--- a/gnu/packages/haskell.scm
+++ b/gnu/packages/haskell.scm
@@ -11044,6 +11044,31 @@ are described in a file named @code{package.yaml}.  Both @code{cabal2nix} and
 @code{package.yaml}.")
     (license license:expat)))
 
+(define-public ghc-raw-strings-qq
+  (package
+    (name "ghc-raw-strings-qq")
+    (version "1.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/"
+                           "raw-strings-qq/raw-strings-qq-"
+                           version ".tar.gz"))
+       (sha256
+        (base32
+         "1lxy1wy3awf52968iy5y9r5z4qgnn2sxkdrh7js3m9gadb11w09f"))))
+    (build-system haskell-build-system)
+    (native-inputs `(("ghc-hunit" ,ghc-hunit)))
+    (home-page "https://github.com/23Skidoo/raw-strings-qq")
+    (synopsis "Raw string literals for Haskell")
+    (description
+     "This package provides a quasiquoter for raw string literals, i.e. string
+literals that don't recognise the standard escape sequences.  Basically, they
+make your code more readable by freeing you from the responsibility to escape
+backslashes.  They are useful when working with regular expressions,
+DOS/Windows paths and markup languages (such as XML).")
+    (license license:bsd-3)))
+
 (define-public ghc-weigh
   (package
     (name "ghc-weigh")
-- 
cgit v1.2.3


From 88189099dff99ecb4912c9c01adb920868049bec Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Tue, 2 Oct 2018 18:38:00 +0200
Subject: gnu: Add ghc-inline-c.

* gnu/packages/haskell.scm (ghc-inline-c): New variable.
---
 gnu/packages/haskell.scm | 46 ++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 46 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/haskell.scm b/gnu/packages/haskell.scm
index 6b8a4ee3fc..9bc86bfbd3 100644
--- a/gnu/packages/haskell.scm
+++ b/gnu/packages/haskell.scm
@@ -11069,6 +11069,52 @@ backslashes.  They are useful when working with regular expressions,
 DOS/Windows paths and markup languages (such as XML).")
     (license license:bsd-3)))
 
+(define-public ghc-inline-c
+  (package
+    (name "ghc-inline-c")
+    (version "0.6.1.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/inline-c/"
+                           "inline-c-" version ".tar.gz"))
+       (sha256
+        (base32
+         "0vbfrsqsi7mdziqsnj68bsqlwbqxxhvrmy9rv6w8z18d1m8w3n6h"))))
+    (build-system haskell-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'create-Setup.hs
+           (lambda _
+             (with-output-to-file "Setup.hs"
+               (lambda _
+                 (display "\
+import Distribution.Simple
+main = defaultMain")))
+             #t)))))
+    (inputs
+     `(("ghc-ansi-wl-pprint" ,ghc-ansi-wl-pprint)
+       ("ghc-cryptohash" ,ghc-cryptohash)
+       ("ghc-hashable" ,ghc-hashable)
+       ("ghc-parsec" ,ghc-parsec)
+       ("ghc-parsers" ,ghc-parsers)
+       ("ghc-unordered-containers" ,ghc-unordered-containers)
+       ("ghc-vector" ,ghc-vector)))
+    (native-inputs
+     `(("ghc-quickcheck" ,ghc-quickcheck)
+       ("ghc-hspec" ,ghc-hspec)
+       ("ghc-raw-strings-qq" ,ghc-raw-strings-qq)
+       ("ghc-regex-posix" ,ghc-regex-posix)))
+    (home-page "http://hackage.haskell.org/package/inline-c")
+    (synopsis "Write Haskell source files including C code inline")
+    (description
+     "inline-c lets you seamlessly call C libraries and embed high-performance
+inline C code in Haskell modules.  Haskell and C can be freely intermixed in
+the same source file, and data passed to and from code in either language with
+minimal overhead.  No FFI required.")
+    (license license:expat)))
+
 (define-public ghc-weigh
   (package
     (name "ghc-weigh")
-- 
cgit v1.2.3


From 9ef95a196f5144506eb92e3870de96a180454643 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Tue, 2 Oct 2018 18:38:02 +0200
Subject: gnu: Add ghc-safe-exceptions.

* gnu/packages/haskell.scm (ghc-safe-exceptions): New variable.
---
 gnu/packages/haskell.scm | 33 +++++++++++++++++++++++++++++++++
 1 file changed, 33 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/haskell.scm b/gnu/packages/haskell.scm
index 9bc86bfbd3..5d68ddcada 100644
--- a/gnu/packages/haskell.scm
+++ b/gnu/packages/haskell.scm
@@ -11180,4 +11180,37 @@ Haskell value or function.")
 vector spaces.")
     (license license:bsd-3)))
 
+(define-public ghc-safe-exceptions
+  (package
+    (name "ghc-safe-exceptions")
+    (version "0.1.7.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/"
+                           "safe-exceptions/safe-exceptions-"
+                           version ".tar.gz"))
+       (sha256
+        (base32
+         "0sd0zfsm9pcll5bzzj523rbn45adjrnavdkz52hgmdjjgdcdrk8q"))))
+    (build-system haskell-build-system)
+    (arguments
+     '(#:cabal-revision
+       ("4" "0fid41gishzsyb47wzxhd5falandfirqcp760hcja81qjpfmqd32")))
+    (inputs `(("ghc-exceptions" ,ghc-exceptions)))
+    (native-inputs
+     `(("ghc-hspec" ,ghc-hspec)
+       ("ghc-void" ,ghc-void)
+       ("hspec-discover" ,hspec-discover)))
+    (home-page "https://github.com/fpco/safe-exceptions")
+    (synopsis "Safe, consistent, and easy exception handling")
+    (description "Runtime exceptions - as exposed in @code{base} by the
+@code{Control.Exception} module - have long been an intimidating part of the
+Haskell ecosystem.  This package is intended to overcome this.  It provides a
+safe and simple API on top of the existing exception handling machinery.  The
+API is equivalent to the underlying implementation in terms of power but
+encourages best practices to minimize the chances of getting the exception
+handling wrong.")
+    (license license:expat)))
+
 ;;; haskell.scm ends here
-- 
cgit v1.2.3


From d9ee3e375ca54bb6f4fd6bbc5b3646e27a0c25d0 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Tue, 2 Oct 2018 18:38:04 +0200
Subject: gnu: Add ghc-inline-c-cpp.

* gnu/packages/haskell.scm (ghc-inline-c-cpp): New variable.
---
 gnu/packages/haskell.scm | 36 ++++++++++++++++++++++++++++++++++++
 1 file changed, 36 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/haskell.scm b/gnu/packages/haskell.scm
index 5d68ddcada..9e47c4cbfc 100644
--- a/gnu/packages/haskell.scm
+++ b/gnu/packages/haskell.scm
@@ -11213,4 +11213,40 @@ encourages best practices to minimize the chances of getting the exception
 handling wrong.")
     (license license:expat)))
 
+(define-public ghc-inline-c-cpp
+  (package
+    (name "ghc-inline-c-cpp")
+    (version "0.2.2.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/inline-c-cpp/"
+                           "inline-c-cpp-" version ".tar.gz"))
+       (sha256
+        (base32
+         "1rk7fmpkmxw9hhwr8df29kadnf0ybnwj64ggdbnsdrpfyhnkisci"))))
+    (build-system haskell-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'create-Setup.hs
+           (lambda _
+             (with-output-to-file "Setup.hs"
+               (lambda _
+                 (display "\
+import Distribution.Simple
+main = defaultMain")))
+             #t)))))
+    (inputs
+     `(("ghc-inline-c" ,ghc-inline-c)
+       ("ghc-safe-exceptions" ,ghc-safe-exceptions)))
+    (native-inputs
+     `(("ghc-hspec" ,ghc-hspec)))
+    (home-page "https://hackage.haskell.org/package/inline-c-cpp")
+    (synopsis "Lets you embed C++ code into Haskell")
+    (description
+     "This package provides utilities to inline C++ code into Haskell using
+@code{inline-c}.")
+    (license license:expat)))
+
 ;;; haskell.scm ends here
-- 
cgit v1.2.3


From d453b899448bd1dc909e7ef279d52940a95031e0 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Tue, 2 Oct 2018 18:38:06 +0200
Subject: gnu: Add ghc-bytestring-lexing.

* gnu/packages/haskell.scm (ghc-bytestring-lexing): New variable.
---
 gnu/packages/haskell.scm | 21 +++++++++++++++++++++
 1 file changed, 21 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/haskell.scm b/gnu/packages/haskell.scm
index 9e47c4cbfc..33354e883b 100644
--- a/gnu/packages/haskell.scm
+++ b/gnu/packages/haskell.scm
@@ -11249,4 +11249,25 @@ main = defaultMain")))
 @code{inline-c}.")
     (license license:expat)))
 
+(define-public ghc-bytestring-lexing
+  (package
+    (name "ghc-bytestring-lexing")
+    (version "0.5.0.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/"
+                           "bytestring-lexing/bytestring-lexing-"
+                           version ".tar.gz"))
+       (sha256
+        (base32
+         "0wrzniawhgpphc6yx1v972gyqxdbv0pizaz9bafahrshyb9svy81"))))
+    (build-system haskell-build-system)
+    (home-page "http://code.haskell.org/~wren/")
+    (synopsis "Parse and produce literals from strict or lazy bytestrings")
+    (description
+     "This package provides tools to parse and produce literals efficiently
+from strict or lazy bytestrings.")
+    (license license:bsd-2)))
+
 ;;; haskell.scm ends here
-- 
cgit v1.2.3


From c7e400b1eefd627e634a9624f4f68f217d55715d Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Tue, 2 Oct 2018 18:38:08 +0200
Subject: gnu: Add ghc-configurator.

* gnu/packages/haskell.scm (ghc-configurator): New variable.
---
 gnu/packages/haskell.scm | 43 +++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 43 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/haskell.scm b/gnu/packages/haskell.scm
index 33354e883b..af44232cee 100644
--- a/gnu/packages/haskell.scm
+++ b/gnu/packages/haskell.scm
@@ -11270,4 +11270,47 @@ main = defaultMain")))
 from strict or lazy bytestrings.")
     (license license:bsd-2)))
 
+(define-public ghc-configurator
+  (package
+    (name "ghc-configurator")
+    (version "0.3.0.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/"
+                           "configurator/configurator-"
+                           version ".tar.gz"))
+       (sha256
+        (base32
+         "1d1iq1knwiq6ia5g64rw5hqm6dakz912qj13r89737rfcxmrkfbf"))))
+    (build-system haskell-build-system)
+    (inputs
+     `(("ghc-attoparsec" ,ghc-attoparsec)
+       ("ghc-hashable" ,ghc-hashable)
+       ("ghc-text" ,ghc-text)
+       ("ghc-unix-compat" ,ghc-unix-compat)
+       ("ghc-unordered-containers" ,ghc-unordered-containers)))
+    (native-inputs
+     `(("ghc-hunit" ,ghc-hunit)
+       ("ghc-test-framework" ,ghc-test-framework)
+       ("ghc-test-framework-hunit" ,ghc-test-framework-hunit)))
+    (home-page "http://github.com/bos/configurator")
+    (synopsis "Configuration management")
+    (description
+     "This package provides a configuration management library for programs
+and daemons.  The features include:
+
+@enumerate
+@item Automatic, dynamic reloading in response to modifications to
+  configuration files.
+@item A simple, but flexible, configuration language, supporting several of
+  the most commonly needed types of data, along with interpolation of strings
+  from the configuration or the system environment (e.g. @code{$(HOME)}).
+@item Subscription-based notification of changes to configuration properties.
+@item An @code{import} directive allows the configuration of a complex
+  application to be split across several smaller files, or common configuration
+  data to be shared across several applications.
+@end enumerate\n")
+    (license license:bsd-3)))
+
 ;;; haskell.scm ends here
-- 
cgit v1.2.3


From ea202046fa66028463df9cf23399d4adc39f5c36 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Tue, 2 Oct 2018 18:38:10 +0200
Subject: gnu: Add ghc-file-embed.

* gnu/packages/haskell.scm (ghc-file-embed): New variable.
---
 gnu/packages/haskell.scm | 21 +++++++++++++++++++++
 1 file changed, 21 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/haskell.scm b/gnu/packages/haskell.scm
index af44232cee..28f5bdffe6 100644
--- a/gnu/packages/haskell.scm
+++ b/gnu/packages/haskell.scm
@@ -11313,4 +11313,25 @@ and daemons.  The features include:
 @end enumerate\n")
     (license license:bsd-3)))
 
+(define-public ghc-file-embed
+  (package
+    (name "ghc-file-embed")
+    (version "0.0.10.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/file-embed/"
+                           "file-embed-" version ".tar.gz"))
+       (sha256
+        (base32
+         "0lj164cnzqyd487mli91nnr7137a4h4qsasfwsnsh77sx12fpk9k"))))
+    (build-system haskell-build-system)
+    (home-page "https://github.com/snoyberg/file-embed")
+    (synopsis "Use Template Haskell to embed file contents directly")
+    (description
+     "This package allows you to use Template Haskell to read a file or all
+the files in a directory, and turn them into @code{(path, bytestring)} pairs
+embedded in your Haskell code.")
+    (license license:bsd-3)))
+
 ;;; haskell.scm ends here
-- 
cgit v1.2.3


From b1f9cc88c4e371e39aae4a6dee8fcc775c2ac9a5 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Tue, 2 Oct 2018 18:38:12 +0200
Subject: gnu: Add ghc-safeio.

* gnu/packages/haskell.scm (ghc-safeio): New variable.
---
 gnu/packages/haskell.scm | 30 ++++++++++++++++++++++++++++++
 1 file changed, 30 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/haskell.scm b/gnu/packages/haskell.scm
index 28f5bdffe6..0a90ac523c 100644
--- a/gnu/packages/haskell.scm
+++ b/gnu/packages/haskell.scm
@@ -11334,4 +11334,34 @@ the files in a directory, and turn them into @code{(path, bytestring)} pairs
 embedded in your Haskell code.")
     (license license:bsd-3)))
 
+(define-public ghc-safeio
+  (package
+    (name "ghc-safeio")
+    (version "0.0.5.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/safeio/"
+                           "safeio-" version ".tar.gz"))
+       (sha256
+        (base32
+         "04g3070cbjdqj0h9l9ii6470xcbn40xfv4fr89a8yvnkdim9nyfm"))))
+    (build-system haskell-build-system)
+    (inputs
+     `(("ghc-conduit" ,ghc-conduit)
+       ("ghc-conduit-combinators" ,ghc-conduit-combinators)
+       ("ghc-exceptions" ,ghc-exceptions)
+       ("ghc-resourcet" ,ghc-resourcet)))
+    (native-inputs
+     `(("ghc-hunit" ,ghc-hunit)
+       ("ghc-test-framework" ,ghc-test-framework)
+       ("ghc-test-framework-hunit" ,ghc-test-framework-hunit)
+       ("ghc-test-framework-th" ,ghc-test-framework-th)))
+    (home-page "https://github.com/luispedro/safeio")
+    (synopsis "Write output to disk atomically")
+    (description
+     "This package implements utilities to perform atomic output so as to
+avoid the problem of partial intermediate files.")
+    (license license:expat)))
+
 ;;; haskell.scm ends here
-- 
cgit v1.2.3


From d71078bc75d149c70dc573a259986f1731145693 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Tue, 2 Oct 2018 18:38:14 +0200
Subject: gnu: Add ngless.

* gnu/packages/bioinformatics.scm (ngless): New variable.
---
 gnu/packages/bioinformatics.scm | 87 +++++++++++++++++++++++++++++++++++++++++
 1 file changed, 87 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 43220d22fe..ab9dc185a3 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -38,6 +38,7 @@
   #:use-module (guix build-system ant)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system cmake)
+  #:use-module (guix build-system haskell)
   #:use-module (guix build-system ocaml)
   #:use-module (guix build-system perl)
   #:use-module (guix build-system python)
@@ -72,6 +73,8 @@
   #:use-module (gnu packages groff)
   #:use-module (gnu packages guile)
   #:use-module (gnu packages haskell)
+  #:use-module (gnu packages haskell-check)
+  #:use-module (gnu packages haskell-web)
   #:use-module (gnu packages image)
   #:use-module (gnu packages imagemagick)
   #:use-module (gnu packages java)
@@ -13970,3 +13973,87 @@ enrichment analysis (GSEA) calculation with or without the absolute filtering.
   Without filtering, users can perform (original) two-tailed or one-tailed
 absolute GSEA.")
     (license license:gpl2)))
+
+(define-public ngless
+  (package
+    (name "ngless")
+    (version "0.9.1")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://gitlab.com/ngless/ngless.git")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32
+         "0mc2gi7h4lx74zylvyp76mvc0w6706j858ii9vlgzqsw6acpr117"))))
+    (build-system haskell-build-system)
+    (arguments
+     `(#:haddock? #f ; The haddock phase fails with: NGLess/CmdArgs.hs:20:1:
+                     ; error: parse error on input import
+                     ; import Options.Applicative
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'create-cabal-file
+           (lambda _ (invoke "hpack") #t)))))
+    (inputs
+     `(("ghc-aeson" ,ghc-aeson)
+       ("ghc-ansi-terminal" ,ghc-ansi-terminal)
+       ("ghc-async" ,ghc-async)
+       ("ghc-atomic-write" ,ghc-atomic-write)
+       ("ghc-bytestring-lexing" ,ghc-bytestring-lexing)
+       ("ghc-chart" ,ghc-chart)
+       ("ghc-chart-cairo" ,ghc-chart-cairo)
+       ("ghc-conduit" ,ghc-conduit)
+       ("ghc-conduit-algorithms" ,ghc-conduit-algorithms)
+       ("ghc-conduit-combinators" ,ghc-conduit-combinators)
+       ("ghc-conduit-extra" ,ghc-conduit-extra)
+       ("ghc-configurator" ,ghc-configurator)
+       ("ghc-convertible" ,ghc-convertible)
+       ("ghc-data-default" ,ghc-data-default)
+       ("ghc-double-conversion" ,ghc-double-conversion)
+       ("ghc-edit-distance" ,ghc-edit-distance)
+       ("ghc-either" ,ghc-either)
+       ("ghc-errors" ,ghc-errors)
+       ("ghc-extra" ,ghc-extra)
+       ("ghc-filemanip" ,ghc-filemanip)
+       ("ghc-file-embed" ,ghc-file-embed)
+       ("ghc-gitrev" ,ghc-gitrev)
+       ("ghc-hashtables" ,ghc-hashtables)
+       ("ghc-http-conduit" ,ghc-http-conduit)
+       ("ghc-inline-c" ,ghc-inline-c)
+       ("ghc-inline-c-cpp" ,ghc-inline-c-cpp)
+       ("ghc-intervalmap" ,ghc-intervalmap)
+       ("ghc-missingh" ,ghc-missingh)
+       ("ghc-optparse-applicative" ,ghc-optparse-applicative)
+       ("ghc-parsec" ,ghc-parsec)
+       ("ghc-regex" ,ghc-regex)
+       ("ghc-safe" ,ghc-safe)
+       ("ghc-safeio" ,ghc-safeio)
+       ("ghc-strict" ,ghc-strict)
+       ("ghc-tar" ,ghc-tar)
+       ("ghc-text" ,ghc-text)
+       ("ghc-unliftio" ,ghc-unliftio)
+       ("ghc-unliftio-core" ,ghc-unliftio-core)
+       ("ghc-vector" ,ghc-vector)
+       ("ghc-yaml" ,ghc-yaml)
+       ("ghc-zlib" ,ghc-zlib)))
+    (propagated-inputs
+     `(("r-r6" ,r-r6)
+       ("r-hdf5r" ,r-hdf5r)
+       ("r-iterators" ,r-iterators)
+       ("r-itertools" ,r-itertools)
+       ("r-matrix" ,r-matrix)))
+    (native-inputs
+     `(("ghc-hpack" ,ghc-hpack)
+       ("ghc-quickcheck" ,ghc-quickcheck)
+       ("ghc-test-framework" ,ghc-test-framework)
+       ("ghc-test-framework-hunit",ghc-test-framework-hunit)
+       ("ghc-test-framework-quickcheck2" ,ghc-test-framework-quickcheck2)
+       ("ghc-test-framework-th" ,ghc-test-framework-th)))
+    (home-page "https://gitlab.com/ngless/ngless")
+    (synopsis "DSL for processing next-generation sequencing data")
+    (description "Ngless is a domain-specific language for
+@dfn{next-generation sequencing} (NGS) data processing.")
+    (license license:expat)))
-- 
cgit v1.2.3


From e90ce1157794bfecfe93f7c31dc4bd631dd710fb Mon Sep 17 00:00:00 2001
From: Leo Famulari <leo@famulari.name>
Date: Sat, 6 Oct 2018 03:32:12 -0400
Subject: gnu: git: Update to 2.19.1 [fixes CVE-2018-17456].

* gnu/packages/version-control.scm (git): Update to 2.19.1.
---
 gnu/packages/version-control.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/version-control.scm b/gnu/packages/version-control.scm
index cc892b9c62..00d7e1f189 100644
--- a/gnu/packages/version-control.scm
+++ b/gnu/packages/version-control.scm
@@ -146,14 +146,14 @@ as well as the classic centralized workflow.")
    (name "git")
    ;; XXX When updating Git, check if the special 'git-source' input to cgit
    ;; needs to be updated as well.
-   (version "2.19.0")
+   (version "2.19.1")
    (source (origin
             (method url-fetch)
             (uri (string-append "mirror://kernel.org/software/scm/git/git-"
                                 version ".tar.xz"))
             (sha256
              (base32
-              "1x1y5z3awabmfg7hk6zb331jxngad4nal4507v96bnf0izsyy3qq"))))
+              "1dfv43lmdnxz42504jc89sihbv1d4d6kgqcz3c5ji140kfm5cl1l"))))
    (build-system gnu-build-system)
    (native-inputs
     `(("native-perl" ,perl)
@@ -166,7 +166,7 @@ as well as the classic centralized workflow.")
                 version ".tar.xz"))
           (sha256
            (base32
-            "1jvxiqvp9q4is3np063ny7rnmk5hm36d34bhi3cgv89njqdh8laf"))))))
+            "1vn6pi9yvw7rnb9dvi1yjrvv39fqd1m9mwbaffqwizs3gaf91br7"))))))
    (inputs
     `(("curl" ,curl)
       ("expat" ,expat)
-- 
cgit v1.2.3


From ccfac015bfb9eb3fa50590517f01fdb20c810750 Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Sat, 6 Oct 2018 18:18:22 +0200
Subject: gnu: wcslib: Update to 5.20.

* gnu/packages/astronomy.scm (wcslib): Update to 5.20.
[arguments]: Build parallelly.
---
 gnu/packages/astronomy.scm | 7 +++----
 1 file changed, 3 insertions(+), 4 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 88e3723a1f..3c8b9cc8df 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -68,7 +68,7 @@ in FITS files.")
 (define-public wcslib
   (package
     (name "wcslib")
-    (version "5.18")
+    (version "5.20")
     (source
      (origin
        (method url-fetch)
@@ -76,7 +76,7 @@ in FITS files.")
              "ftp://ftp.atnf.csiro.au/pub/software/wcslib/" name "-" version
              ".tar.bz2"))
        (sha256
-        (base32 "16jh568k99c9p0y3qzcgps2rii933x9wlay7q1xm0lr59zqzp4xn"))))
+        (base32 "1c8g9kv4dxrnawnqi4spi2p10s2xs7x75pdfxhbqxgcc97dkgh0b"))))
     (inputs
      `(("cfitsio" ,cfitsio)))
     (build-system gnu-build-system)
@@ -89,8 +89,7 @@ in FITS files.")
                (("/bin/sh") "sh"))
              #t))
          (delete 'install-license-files)) ; installed by ‘make install’
-       ;; Both the build and tests fail randomly when run in parallel.
-       #:parallel-build? #f
+       ;; Parallel execution of the test suite is not supported.
        #:parallel-tests? #f))
     (home-page "https://www.atnf.csiro.au/people/mcalabre/WCS")
     (synopsis "Library which implements the FITS WCS standard")
-- 
cgit v1.2.3


From 96808b39e76aae65a0ed3149780f23d91326b6c8 Mon Sep 17 00:00:00 2001
From: 宋文武 <iyzsong@member.fsf.org>
Date: Sun, 7 Oct 2018 14:55:55 +0800
Subject: gnu: pd: Update to 0.49-0.

* gnu/packages/music.scm (pd): Update to 0.49-0.
---
 gnu/packages/music.scm | 14 +++++++++-----
 1 file changed, 9 insertions(+), 5 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/music.scm b/gnu/packages/music.scm
index 2d834d8c1f..3163e6a8f6 100644
--- a/gnu/packages/music.scm
+++ b/gnu/packages/music.scm
@@ -1726,7 +1726,7 @@ export.")
 (define-public pd
   (package
     (name "pd")
-    (version "0.47-1")
+    (version "0.49-0")
     (source (origin
               (method url-fetch)
               (uri
@@ -1734,16 +1734,20 @@ export.")
                               version ".src.tar.gz"))
               (sha256
                (base32
-                "0k5s949kqd7yw97h3m8z81bjz32bis9m4ih8df1z0ymipnafca67"))))
+                "18rzqbpgnnvyslap7k0ly87aw1bbxkb0rk5agpr423ibs9slxq6j"))))
     (build-system gnu-build-system)
     (arguments
      `(#:tests? #f ; no "check" target
+       #:configure-flags
+       (list
+        "--enable-jack"
+        (string-append "--with-wish=" (string-append
+                                       (assoc-ref %build-inputs "tk")
+                                       "/bin/wish8.6")))
        #:phases
        (modify-phases %standard-phases
-         (add-before 'configure 'fix-wish-path
+         (add-before 'configure 'fix-with-path
            (lambda _
-             (substitute* "src/s_inter.c"
-               (("  wish ") (string-append "  " (which "wish8.6") " ")))
              (substitute* "tcl/pd-gui.tcl"
                (("exec wish ") (string-append "exec " (which "wish8.6") " ")))
              #t))
-- 
cgit v1.2.3


From c8a99ab9112b6a671b15766301f03e428108c4eb Mon Sep 17 00:00:00 2001
From: fis trivial <ybbs.daans@hotmail.com>
Date: Sun, 7 Oct 2018 09:03:40 +0000
Subject: gnu: mercurial: Update to 4.6.2.

* gnu/packages/version-control.scm (mercurial): Update to 4.6.2.
---
 gnu/packages/version-control.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/version-control.scm b/gnu/packages/version-control.scm
index 00d7e1f189..528d117e29 100644
--- a/gnu/packages/version-control.scm
+++ b/gnu/packages/version-control.scm
@@ -1119,14 +1119,14 @@ control to Git repositories.")
 (define-public mercurial
   (package
     (name "mercurial")
-    (version "4.4.1")
+    (version "4.6.2")
     (source (origin
              (method url-fetch)
              (uri (string-append "https://www.mercurial-scm.org/"
                                  "release/mercurial-" version ".tar.gz"))
              (sha256
               (base32
-               "0ik2ypzxjr6vpcghxvn39a73gw52629n7vwak04gnbycsq95aalg"))))
+               "1bv6wgcdx8glihjjfg22khhc52mclsn4kwfqvzbzlg0b42h4xl0w"))))
     (build-system python-build-system)
     (arguments
      `(;; Restrict to Python 2, as Python 3 would require
-- 
cgit v1.2.3


From 2c4be1add077bf30f949282edcc2ea507ba44497 Mon Sep 17 00:00:00 2001
From: Danny Milosavljevic <dannym@scratchpost.org>
Date: Sun, 7 Oct 2018 14:14:13 +0200
Subject: gnu: Add java-w3c-smil.

* gnu/packages/batik.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
---
 gnu/local.mk           |  1 +
 gnu/packages/batik.scm | 90 ++++++++++++++++++++++++++++++++++++++++++++++++++
 2 files changed, 91 insertions(+)
 create mode 100644 gnu/packages/batik.scm

(limited to 'gnu')

diff --git a/gnu/local.mk b/gnu/local.mk
index 8f854e98b5..f1ce800dd5 100644
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@ -77,6 +77,7 @@ GNU_SYSTEM_MODULES =				\
   %D%/packages/backup.scm			\
   %D%/packages/base.scm				\
   %D%/packages/bash.scm				\
+  %D%/packages/batik.scm			\
   %D%/packages/bdw-gc.scm			\
   %D%/packages/benchmark.scm			\
   %D%/packages/bioconductor.scm			\
diff --git a/gnu/packages/batik.scm b/gnu/packages/batik.scm
new file mode 100644
index 0000000000..91eb8f01d5
--- /dev/null
+++ b/gnu/packages/batik.scm
@@ -0,0 +1,90 @@
+;;; GNU Guix --- Functional package management for GNU
+;;; Copyright © 2018 Danny Milosavljevic <dannym@scratchpost.org>
+;;;
+;;; This file is part of GNU Guix.
+;;;
+;;; GNU Guix is free software; you can redistribute it and/or modify it
+;;; under the terms of the GNU General Public License as published by
+;;; the Free Software Foundation; either version 3 of the License, or (at
+;;; your option) any later version.
+;;;
+;;; GNU Guix is distributed in the hope that it will be useful, but
+;;; WITHOUT ANY WARRANTY; without even the implied warranty of
+;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+;;; GNU General Public License for more details.
+;;;
+;;; You should have received a copy of the GNU General Public License
+;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
+
+(define-module (gnu packages batik)
+  #:use-module ((guix licenses) #:prefix license:)
+  #:use-module (guix utils)
+  #:use-module (guix download)
+  #:use-module (guix git-download)
+  #:use-module (guix packages)
+  #:use-module (guix build-system ant)
+  #:use-module (gnu packages)
+  #:use-module (gnu packages compression)
+  #:use-module (gnu packages java)
+  #:use-module (gnu packages textutils))
+
+(define-public java-w3c-smil-3.0
+  (package
+    (name "java-w3c-smil")
+    (version "3.0")
+    (source #f)
+    (build-system ant-build-system)
+    (arguments
+     `(#:jar-name "w3c-smil.jar"
+       #:source-dir "."
+       #:tests? #f ; No tests exist.
+       #:phases
+       (modify-phases %standard-phases
+         (replace 'unpack
+           (lambda* (#:key source #:allow-other-keys)
+             ;; https://www.w3.org/TR/SMIL3/smil-timing.html#q142
+             (mkdir-p "org/w3c/dom/smil")
+             (call-with-output-file "org/w3c/dom/smil/ElementTimeControl.java"
+               (lambda (port)
+                 (format port "
+package org.w3c.dom.smil;
+
+import org.w3c.dom.DOMException;
+
+public interface ElementTimeControl {
+    public boolean  beginElement();
+
+    public boolean  beginElementAt(float offset);
+
+    public boolean endElement();
+
+    public boolean endElementAt(float offset);
+}
+")))
+             (call-with-output-file "org/w3c/dom/smil/TimeEvent.java"
+               (lambda (port)
+                 (format port "
+package org.w3c.dom.smil;
+
+import org.w3c.dom.events.Event;
+import org.w3c.dom.views.AbstractView;
+
+public interface TimeEvent extends Event {
+    public AbstractView getView();
+
+    public int getDetail();
+
+    public void initTimeEvent(String typeArg,
+                              AbstractView viewArg,
+                              int detailArg);
+
+}
+")))
+             #t)))))
+    (native-inputs
+     `(("unzip" ,unzip)))
+    (home-page "https://www.w3.org/Style/CSS/SAC/")
+    (synopsis "W3C SAC interface for CSS parsers in Java")
+    (description "This package provides a SAC interface by the W3C.
+SAC is an interface for CSS parsers.")
+    (license license:w3c)))
-- 
cgit v1.2.3


From da99c46f63d13cd42b871f3e180be830061cc8b3 Mon Sep 17 00:00:00 2001
From: Danny Milosavljevic <dannym@scratchpost.org>
Date: Sun, 7 Oct 2018 14:15:21 +0200
Subject: gnu: Add java-w3c-svg.

* gnu/packages/batik.scm (java-w3c-svg-1.0, java-w3c-svg): New variables.
---
 gnu/packages/batik.scm | 68 ++++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 68 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/batik.scm b/gnu/packages/batik.scm
index 91eb8f01d5..b3361d9092 100644
--- a/gnu/packages/batik.scm
+++ b/gnu/packages/batik.scm
@@ -88,3 +88,71 @@ public interface TimeEvent extends Event {
     (description "This package provides a SAC interface by the W3C.
 SAC is an interface for CSS parsers.")
     (license license:w3c)))
+
+(define-public java-w3c-svg-1.0
+  (package
+    (name "java-w3c-svg")
+    (version "20010904")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (string-append "http://www.w3.org/TR/2001/REC-SVG-" version
+                            "/java-binding.zip"))
+        (sha256
+         (base32
+          "0gnxvx51bg6ijplf6l2q0i1m07101f7fickawshfygnsdjqfdnbp"))))
+    (build-system ant-build-system)
+    (arguments
+     `(#:jar-name "w3c-svg.jar"
+       #:source-dir "."
+       #:tests? #f ; No tests exist.
+       #:phases
+       (modify-phases %standard-phases
+         (replace 'unpack
+           (lambda* (#:key source #:allow-other-keys)
+             (invoke "unzip" source)))
+         (add-after 'unpack 'patch-interface
+           (lambda _
+             ;; Make it compatible with batik.
+             ;; This is equivalent to usingxml commons externals'
+             ;; "externals" part from https://xerces.apache.org/mirrors.cgi
+             (substitute* "SVGFEConvolveMatrixElement.java"
+              (("public SVGAnimatedLength[ ]*getKernelUnitLength")
+               "public SVGAnimatedNumber getKernelUnitLength"))
+             (substitute* "SVGFEMorphologyElement.java"
+              (("public SVGAnimatedLength[ ]*getRadius")
+               "public SVGAnimatedNumber getRadius"))
+             (call-with-output-file "EventListenerInitializer.java"
+               (lambda (port)
+                 (format port "
+// License: http://www.apache.org/licenses/LICENSE-2.0
+package org.w3c.dom.svg;
+public interface EventListenerInitializer {
+    public void initializeEventListeners(SVGDocument doc);
+}
+
+")))
+             #t)))))
+    (propagated-inputs
+     `(("java-w3c-smil" ,java-w3c-smil-3.0)))
+    (native-inputs
+     `(("unzip" ,unzip)))
+    (home-page "https://www.w3.org/Style/CSS/SAC/")
+    (synopsis "W3C SVG interface")
+    (description "This package provides a SVG interface.")
+    (license license:w3c)))
+
+(define-public java-w3c-svg
+  (package
+    (inherit java-w3c-svg-1.0)
+    (version "20110816")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (string-append "http://www.w3.org/TR/2011/REC-SVG11-" version
+                            "/java-binding.zip"))
+        (sha256
+         (base32
+          "0jicqcrxav8ggs37amgvvwgc2f0qp1c5wns4rb2i3si83s2m09ns"))))
+    (propagated-inputs
+     `())))
-- 
cgit v1.2.3


From 283f57d8fa3dc2a9a6798dbea6b6b87319fda1ad Mon Sep 17 00:00:00 2001
From: Danny Milosavljevic <dannym@scratchpost.org>
Date: Sun, 7 Oct 2018 14:16:01 +0200
Subject: gnu: Add java-w3c-sac.

* gnu/packages/batik.scm (java-w3c-sac): New variable.
---
 gnu/packages/batik.scm | 30 ++++++++++++++++++++++++++++++
 1 file changed, 30 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/batik.scm b/gnu/packages/batik.scm
index b3361d9092..cf946e570e 100644
--- a/gnu/packages/batik.scm
+++ b/gnu/packages/batik.scm
@@ -156,3 +156,33 @@ public interface EventListenerInitializer {
           "0jicqcrxav8ggs37amgvvwgc2f0qp1c5wns4rb2i3si83s2m09ns"))))
     (propagated-inputs
      `())))
+
+(define-public java-w3c-sac
+  (package
+    (name "java-w3c-sac")
+    (version "1.3")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (string-append "https://www.w3.org/2002/06/sacjava-" version
+                            ".zip"))
+        (sha256
+         (base32
+          "1djp2nnzf8jchnwz1ij9i5jfx4cg1ryf3lbw133yzjy0wkhcla52"))))
+    (build-system ant-build-system)
+    (arguments
+     `(#:jar-name "w3c-sac.jar"
+       #:source-dir "sac-1.3"
+       #:tests? #f ; No tests exist.
+       #:phases
+       (modify-phases %standard-phases
+         (replace 'unpack
+           (lambda* (#:key source #:allow-other-keys)
+             (invoke "unzip" source))))))
+    (native-inputs
+     `(("unzip" ,unzip)))
+    (home-page "https://www.w3.org/Style/CSS/SAC/")
+    (synopsis "W3C SAC interface for CSS parsers in Java")
+    (description "This package provides a SAC interface by the W3C.
+SAC is an interface for CSS parsers.")
+    (license license:w3c)))
-- 
cgit v1.2.3


From 52d2725ab126a98f170482d483ef4ddd71ba8edf Mon Sep 17 00:00:00 2001
From: Danny Milosavljevic <dannym@scratchpost.org>
Date: Sun, 7 Oct 2018 14:32:05 +0200
Subject: gnu: Add java-xmlgraphics-commons.

* gnu/packages/batik.scm (java-xmlgraphics-commons): New variable.
---
 gnu/packages/batik.scm | 45 +++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 45 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/batik.scm b/gnu/packages/batik.scm
index cf946e570e..d45600f7b9 100644
--- a/gnu/packages/batik.scm
+++ b/gnu/packages/batik.scm
@@ -186,3 +186,48 @@ public interface EventListenerInitializer {
     (description "This package provides a SAC interface by the W3C.
 SAC is an interface for CSS parsers.")
     (license license:w3c)))
+
+(define-public java-xmlgraphics-commons
+  (package
+    (name "java-xmlgraphics-commons")
+    (version "2.3")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (string-append
+              "mirror://apache/xmlgraphics/commons/source/xmlgraphics-commons-"
+              version "-src.tar.gz"))
+        (sha256
+         (base32
+          "0a432a4ca3vgnbada5cy9mlmfzmq6hi4i176drfxrp17q2d43w23"))))
+    (build-system ant-build-system)
+    (arguments
+     `(#:build-target "jar-main"
+       ;; TODO: More detailed tests are available--but they need
+       ;; commons-xml-resolver.
+       ;; TODO: Provide commons-xml-resolver.
+       #:test-target "junit-basic"
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'make-reproducible
+           (lambda _
+             (substitute* "build.xml"
+              (("<attribute name=\"Build-Id\" value=\"[^\"]*\"")
+               "<attribute name=\"Build-Id\" value=\"\""))
+             #t))
+         (replace 'install
+           (lambda* (#:key outputs #:allow-other-keys)
+             (let* ((out (assoc-ref outputs "out"))
+                    (out-share (string-append out "/share/java")))
+               (for-each (lambda (name)
+                           (install-file name out-share))
+                         (find-files "build"
+                                     "xmlgraphics-commons.*\\.jar$"))
+               #t))))))
+    (native-inputs
+     `(("java-junit" ,java-junit)))
+    (home-page "https://xmlgraphics.apache.org/commons/")
+    (synopsis "XMLGraphics constants")
+    (description "This package provides XMLGraphics constants (originally
+from @code{batik}).")
+    (license license:asl2.0)))
-- 
cgit v1.2.3


From 02803fdf45541584d0341786d5dfbfb76f17d317 Mon Sep 17 00:00:00 2001
From: Danny Milosavljevic <dannym@scratchpost.org>
Date: Sun, 7 Oct 2018 14:42:15 +0200
Subject: gnu: java-xmlgraphics-commons: Remove bundled dependencies.

* gnu/packages/batik.scm (java-xmlgraphics-commons): Remove bundled
dependencies.
---
 gnu/packages/batik.scm | 28 ++++++++++++++++++++++------
 1 file changed, 22 insertions(+), 6 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/batik.scm b/gnu/packages/batik.scm
index d45600f7b9..9449e565f1 100644
--- a/gnu/packages/batik.scm
+++ b/gnu/packages/batik.scm
@@ -26,7 +26,8 @@
   #:use-module (gnu packages)
   #:use-module (gnu packages compression)
   #:use-module (gnu packages java)
-  #:use-module (gnu packages textutils))
+  #:use-module (gnu packages textutils)
+  #:use-module (gnu packages xml))
 
 (define-public java-w3c-smil-3.0
   (package
@@ -199,13 +200,16 @@ SAC is an interface for CSS parsers.")
               version "-src.tar.gz"))
         (sha256
          (base32
-          "0a432a4ca3vgnbada5cy9mlmfzmq6hi4i176drfxrp17q2d43w23"))))
+          "0a432a4ca3vgnbada5cy9mlmfzmq6hi4i176drfxrp17q2d43w23"))
+        (modules '((guix build utils)))
+        (snippet
+         `(begin
+            (delete-file-recursively "lib")
+            #t))))
     (build-system ant-build-system)
     (arguments
      `(#:build-target "jar-main"
-       ;; TODO: More detailed tests are available--but they need
-       ;; commons-xml-resolver.
-       ;; TODO: Provide commons-xml-resolver.
+       ;; TODO: More detailed tests are available.
        #:test-target "junit-basic"
        #:phases
        (modify-phases %standard-phases
@@ -215,6 +219,11 @@ SAC is an interface for CSS parsers.")
               (("<attribute name=\"Build-Id\" value=\"[^\"]*\"")
                "<attribute name=\"Build-Id\" value=\"\""))
              #t))
+         (add-before 'build 'prepare-build-directories
+           (lambda _
+             (mkdir "lib")
+             (mkdir "lib/build")
+             #t))
          (replace 'install
            (lambda* (#:key outputs #:allow-other-keys)
              (let* ((out (assoc-ref outputs "out"))
@@ -225,7 +234,14 @@ SAC is an interface for CSS parsers.")
                                      "xmlgraphics-commons.*\\.jar$"))
                #t))))))
     (native-inputs
-     `(("java-junit" ,java-junit)))
+     `(("java-apache-xml-commons-resolver" ,java-apache-xml-commons-resolver)
+       ("java-hamcrest" ,java-hamcrest-core)
+       ("java-junit" ,java-junit)
+       ("java-mockito" ,java-mockito-1)
+       ("java-objenesis" ,java-objenesis)))
+    (propagated-inputs
+     `(("java-commons-io" ,java-commons-io)
+       ("java-commons-logging-minimal" ,java-commons-logging-minimal)))
     (home-page "https://xmlgraphics.apache.org/commons/")
     (synopsis "XMLGraphics constants")
     (description "This package provides XMLGraphics constants (originally
-- 
cgit v1.2.3


From 05dae4030225d604fd3c8562ce23dbbe597d5de9 Mon Sep 17 00:00:00 2001
From: Danny Milosavljevic <dannym@scratchpost.org>
Date: Sun, 7 Oct 2018 14:43:47 +0200
Subject: gnu: java-xmlgraphics-commons: Make error in tests fail the "check"
 phase.

* gnu/packages/batik.scm (java-xmlgraphics-commons)[arguments]<#:test-target>:
Use "junit" test target.
---
 gnu/packages/batik.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/batik.scm b/gnu/packages/batik.scm
index 9449e565f1..5bba859370 100644
--- a/gnu/packages/batik.scm
+++ b/gnu/packages/batik.scm
@@ -209,8 +209,7 @@ SAC is an interface for CSS parsers.")
     (build-system ant-build-system)
     (arguments
      `(#:build-target "jar-main"
-       ;; TODO: More detailed tests are available.
-       #:test-target "junit-basic"
+       #:test-target "junit"
        #:phases
        (modify-phases %standard-phases
          (add-after 'unpack 'make-reproducible
-- 
cgit v1.2.3


From 3158425eb85419bc8bf787fe1b00af30133bdaa3 Mon Sep 17 00:00:00 2001
From: Danny Milosavljevic <dannym@scratchpost.org>
Date: Sun, 7 Oct 2018 14:46:26 +0200
Subject: gnu: java-xmlgraphics-commons: Add dependency to java-cglib.

* gnu/packages/batik.scm (java-xmlgraphics-commons)[native-inputs]: Add
java-cglib.
---
 gnu/packages/batik.scm | 1 +
 1 file changed, 1 insertion(+)

(limited to 'gnu')

diff --git a/gnu/packages/batik.scm b/gnu/packages/batik.scm
index 5bba859370..5a74d7cc35 100644
--- a/gnu/packages/batik.scm
+++ b/gnu/packages/batik.scm
@@ -234,6 +234,7 @@ SAC is an interface for CSS parsers.")
                #t))))))
     (native-inputs
      `(("java-apache-xml-commons-resolver" ,java-apache-xml-commons-resolver)
+       ("java-cglib" ,java-cglib)
        ("java-hamcrest" ,java-hamcrest-core)
        ("java-junit" ,java-junit)
        ("java-mockito" ,java-mockito-1)
-- 
cgit v1.2.3


From 12a0b38ce6f93913ead590bb7ebc35db66a6e7b2 Mon Sep 17 00:00:00 2001
From: Danny Milosavljevic <dannym@scratchpost.org>
Date: Sun, 7 Oct 2018 14:47:36 +0200
Subject: gnu: java-xmlgraphics-commons: Add dependency to java-asm.

* gnu/packages/batik.scm (java-xmlgraphics-commons)[native-inputs]: Add
java-asm.
---
 gnu/packages/batik.scm | 1 +
 1 file changed, 1 insertion(+)

(limited to 'gnu')

diff --git a/gnu/packages/batik.scm b/gnu/packages/batik.scm
index 5a74d7cc35..cdd1e44713 100644
--- a/gnu/packages/batik.scm
+++ b/gnu/packages/batik.scm
@@ -234,6 +234,7 @@ SAC is an interface for CSS parsers.")
                #t))))))
     (native-inputs
      `(("java-apache-xml-commons-resolver" ,java-apache-xml-commons-resolver)
+       ("java-asm" ,java-asm)
        ("java-cglib" ,java-cglib)
        ("java-hamcrest" ,java-hamcrest-core)
        ("java-junit" ,java-junit)
-- 
cgit v1.2.3


From ae6922ed148b6bde06e37a2c244c67a4f5e6dc00 Mon Sep 17 00:00:00 2001
From: Danny Milosavljevic <dannym@scratchpost.org>
Date: Sun, 7 Oct 2018 15:28:37 +0200
Subject: gnu: Add java-jakarta-regexp.

* gnu/packages/java.scm (java-jakarta-regexp): New variable.
---
 gnu/packages/java.scm | 33 +++++++++++++++++++++++++++++++++
 1 file changed, 33 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/java.scm b/gnu/packages/java.scm
index 96da495c29..93f5bb6aff 100644
--- a/gnu/packages/java.scm
+++ b/gnu/packages/java.scm
@@ -9634,6 +9634,39 @@ Candidate Recommendation, and will correctly serialize XML 1.1 documents if
 the DOM level 3 load/save API's are in use.")
     (license license:asl2.0)))
 
+(define-public java-jakarta-regexp
+  (package
+    (name "java-jakarta-regexp")
+    (version "1.5")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (string-append
+              "https://archive.apache.org/dist/jakarta/regexp/jakarta-regexp-"
+              version ".tar.gz"))
+        (sha256
+         (base32
+          "0zg9rmyif48dck0cv6ynpxv23mmcsx265am1fnnxss7brgw0ms3r"))))
+    (build-system ant-build-system)
+    (arguments
+     `(#:test-target "test"
+       #:phases
+       (modify-phases %standard-phases
+          (replace 'install
+            (lambda* (#:key outputs #:allow-other-keys)
+              (let* ((out (assoc-ref outputs "out"))
+                     (out-share (string-append out "/share/java")))
+                (mkdir-p out-share)
+                (for-each (lambda (name)
+                            (install-file name out-share))
+                          (find-files "build" "^jakarta-regexp-.*\\.jar$"))
+                #t))))))
+    (home-page "https://attic.apache.org/projects/jakarta-regexp.html")
+    (synopsis "Regular expression parser generator for Java.")
+    (description "@code{jakarta-regexp} is an old regular expression parser
+generator for Java.")
+    (license license:asl2.0)))
+
 (define-public java-jline
   (package
     (name "java-jline")
-- 
cgit v1.2.3


From 236fadf52868d3ced233b144f9d560b51dcecec1 Mon Sep 17 00:00:00 2001
From: Jan Nieuwenhuizen <janneke@gnu.org>
Date: Sun, 7 Oct 2018 00:35:23 +0200
Subject: gnu: mes: Update to 0.18.

* gnu/packages/patches/mes-nyacc-0.86.0.patch: Removef file.
* gnu/local.mk (dist_patch_DATA): Remove entry.
* gnu/packages/mes.scm (mes): Update to 0.18.
---
 gnu/local.mk                                |   1 -
 gnu/packages/mes.scm                        |   5 +-
 gnu/packages/patches/mes-nyacc-0.86.0.patch | 197 ----------------------------
 3 files changed, 2 insertions(+), 201 deletions(-)
 delete mode 100644 gnu/packages/patches/mes-nyacc-0.86.0.patch

(limited to 'gnu')

diff --git a/gnu/local.mk b/gnu/local.mk
index f1ce800dd5..8be91c3708 100644
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@ -956,7 +956,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/mcrypt-CVE-2012-4409.patch			\
   %D%/packages/patches/mcrypt-CVE-2012-4426.patch			\
   %D%/packages/patches/mcrypt-CVE-2012-4527.patch			\
-  %D%/packages/patches/mes-nyacc-0.86.0.patch			\
   %D%/packages/patches/mesa-skip-disk-cache-test.patch		\
   %D%/packages/patches/meson-for-build-rpath.patch		\
   %D%/packages/patches/metabat-fix-compilation.patch		\
diff --git a/gnu/packages/mes.scm b/gnu/packages/mes.scm
index 880e140b80..6dc6dfb4cb 100644
--- a/gnu/packages/mes.scm
+++ b/gnu/packages/mes.scm
@@ -63,15 +63,14 @@ extensive examples, including parsers for the Javascript and C99 languages.")
   (let ((triplet "i686-unknown-linux-gnu"))
     (package
       (name "mes")
-      (version "0.17.1")
+      (version "0.18")
       (source (origin
                 (method url-fetch)
                 (uri (string-append "mirror://gnu/mes/"
                                     "mes-" version ".tar.gz"))
-                (patches (search-patches "mes-nyacc-0.86.0.patch"))
                 (sha256
                  (base32
-                  "02g8zig53ffd0ai8kqhv2zj7bj2366a8hr6ydkwakmi2d1amyrna"))))
+                  "1dsaaqyanzsq9m5wrcd2bjhb3qd6928c9q97rg5r730pyqjwxyxf"))))
       (build-system gnu-build-system)
       (supported-systems '("i686-linux" "x86_64-linux"))
       (propagated-inputs
diff --git a/gnu/packages/patches/mes-nyacc-0.86.0.patch b/gnu/packages/patches/mes-nyacc-0.86.0.patch
deleted file mode 100644
index 58dfc5a46b..0000000000
--- a/gnu/packages/patches/mes-nyacc-0.86.0.patch
+++ /dev/null
@@ -1,197 +0,0 @@
-From 9e610736bf779f3295c1192e748cd19cbbe3be28 Mon Sep 17 00:00:00 2001
-From: Jan Nieuwenhuizen <janneke@gnu.org>
-Date: Wed, 5 Sep 2018 20:28:06 +0200
-Subject: [PATCH 1/2] mes: Support Nyacc 0.85.3: Add char-set-copy.
-
-* mes/module/srfi/srfi-14.mes (char-set-copy): New function>
----
- mes/module/srfi/srfi-14.mes | 3 +++
- 1 file changed, 3 insertions(+)
-
-diff --git a/mes/module/srfi/srfi-14.mes b/mes/module/srfi/srfi-14.mes
-index 0be39b1e..a16d16ce 100644
---- a/mes/module/srfi/srfi-14.mes
-+++ b/mes/module/srfi/srfi-14.mes
-@@ -52,3 +52,6 @@
- 
- (define (char-whitespace? c)
-   (char-set-contains? char-set:whitespace c))
-+
-+(define (char-set-copy cs)
-+  (map identity cs))
--- 
-2.18.0
-
-From b952bdf44f11edbfc277600dc35236aae1769b54 Mon Sep 17 00:00:00 2001
-From: Jan Nieuwenhuizen <janneke@gnu.org>
-Date: Wed, 5 Sep 2018 22:14:34 +0200
-Subject: [PATCH 2/2] mes: Support Nyacc 0.85.3: Integrate progress.
-
-* mes/module/nyacc/lang/sx-util.mes: New file.
-* mes/module/nyacc/version.mes: New file.
-* mes/module/nyacc/lang/c99/cpp.mes (nyacc): Include them.
-* mes/module/nyacc/lang/c99/parser.mes (nyacc): Include them.
-* module/mescc/preprocess.scm (need-progress): New function.
-(progress): New function.
-(insert-progress-monitors): Use them to Integrate progress.
----
- mes/module/mescc/preprocess.mes      |  1 +
- mes/module/nyacc/lang/c99/cpp.mes    |  1 +
- mes/module/nyacc/lang/c99/parser.mes |  1 +
- mes/module/nyacc/lang/sx-util.mes    | 27 +++++++++++++++++++++
- mes/module/nyacc/version.mes         | 26 +++++++++++++++++++++
- module/mescc/preprocess.scm          | 35 ++++++++++++++++++++++++++++
- 6 files changed, 91 insertions(+)
- create mode 100644 mes/module/nyacc/lang/sx-util.mes
- create mode 100644 mes/module/nyacc/version.mes
-
-diff --git a/mes/module/mescc/preprocess.mes b/mes/module/mescc/preprocess.mes
-index c7c5fcaa..022a372c 100644
---- a/mes/module/mescc/preprocess.mes
-+++ b/mes/module/mescc/preprocess.mes
-@@ -24,4 +24,5 @@
- (mes-use-module (srfi srfi-13))
- (mes-use-module (srfi srfi-26))
- (mes-use-module (nyacc lang c99 parser))
-+(mes-use-module (nyacc version))
- (include-from-path "mescc/preprocess.scm")
-diff --git a/mes/module/nyacc/lang/c99/cpp.mes b/mes/module/nyacc/lang/c99/cpp.mes
-index fad1dc55..b25c4a93 100644
---- a/mes/module/nyacc/lang/c99/cpp.mes
-+++ b/mes/module/nyacc/lang/c99/cpp.mes
-@@ -28,5 +28,6 @@
- 
- (mes-use-module (nyacc parse))
- (mes-use-module (nyacc lex))
-+(mes-use-module (nyacc lang sx-util))
- (mes-use-module (nyacc lang util))
- (include-from-path "nyacc/lang/c99/cpp.scm")
-diff --git a/mes/module/nyacc/lang/c99/parser.mes b/mes/module/nyacc/lang/c99/parser.mes
-index c51552d6..1a9aaf73 100644
---- a/mes/module/nyacc/lang/c99/parser.mes
-+++ b/mes/module/nyacc/lang/c99/parser.mes
-@@ -32,6 +32,7 @@
- 
- (mes-use-module (nyacc lex))
- (mes-use-module (nyacc parse))
-+(mes-use-module (nyacc lang sx-util))
- (mes-use-module (nyacc lang util))
- (mes-use-module (nyacc lang c99 cpp))
- 
-diff --git a/mes/module/nyacc/lang/sx-util.mes b/mes/module/nyacc/lang/sx-util.mes
-new file mode 100644
-index 00000000..41ac5b4a
---- /dev/null
-+++ b/mes/module/nyacc/lang/sx-util.mes
-@@ -0,0 +1,27 @@
-+;;; -*-scheme-*-
-+
-+;;; GNU Mes --- Maxwell Equations of Software
-+;;; Copyright © 2018 Jan (janneke) Nieuwenhuizen <janneke@gnu.org>
-+;;;
-+;;; This file is part of GNU Mes.
-+;;;
-+;;; GNU Mes is free software; you can redistribute it and/or modify it
-+;;; under the terms of the GNU General Public License as published by
-+;;; the Free Software Foundation; either version 3 of the License, or (at
-+;;; your option) any later version.
-+;;;
-+;;; GNU Mes is distributed in the hope that it will be useful, but
-+;;; WITHOUT ANY WARRANTY; without even the implied warranty of
-+;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-+;;; GNU General Public License for more details.
-+;;;
-+;;; You should have received a copy of the GNU General Public License
-+;;; along with GNU Mes.  If not, see <http://www.gnu.org/licenses/>.
-+
-+;;; Commentary:
-+
-+;;; Code:
-+
-+(mes-use-module (srfi srfi-1))
-+(mes-use-module (srfi srfi-16))
-+(include-from-path "nyacc/lang/sx-util.scm")
-diff --git a/mes/module/nyacc/version.mes b/mes/module/nyacc/version.mes
-new file mode 100644
-index 00000000..b9db628e
---- /dev/null
-+++ b/mes/module/nyacc/version.mes
-@@ -0,0 +1,26 @@
-+;;; -*-scheme-*-
-+
-+;;; GNU Mes --- Maxwell Equations of Software
-+;;; Copyright © 2018 Jan (janneke) Nieuwenhuizen <janneke@gnu.org>
-+;;;
-+;;; This file is part of GNU Mes.
-+;;;
-+;;; GNU Mes is free software; you can redistribute it and/or modify it
-+;;; under the terms of the GNU General Public License as published by
-+;;; the Free Software Foundation; either version 3 of the License, or (at
-+;;; your option) any later version.
-+;;;
-+;;; GNU Mes is distributed in the hope that it will be useful, but
-+;;; WITHOUT ANY WARRANTY; without even the implied warranty of
-+;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-+;;; GNU General Public License for more details.
-+;;;
-+;;; You should have received a copy of the GNU General Public License
-+;;; along with GNU Mes.  If not, see <http://www.gnu.org/licenses/>.
-+
-+;;; Commentary:
-+
-+;;; Code:
-+
-+(include-from-path "nyacc/version.scm")
-+(display "nyacc version\n")
-diff --git a/module/mescc/preprocess.scm b/module/mescc/preprocess.scm
-index 9e341cba..c2efb32c 100644
---- a/module/mescc/preprocess.scm
-+++ b/module/mescc/preprocess.scm
-@@ -26,9 +26,44 @@
-   #:use-module (srfi srfi-1)
-   #:use-module (srfi srfi-26)
-   #:use-module (nyacc lang c99 parser)
-+  #:use-module (nyacc lang c99 parser)
-+  #:use-module (nyacc version)
-   #:use-module (mes guile)
-   #:export (c99-input->ast))
- 
-+(format (current-error-port) "*nyacc-version*=~a\n" *nyacc-version*)
-+;; list of which rules you want progress reported
-+(define need-progress
-+  (assoc-ref
-+   '(("0.85.3" (1 2 3))
-+     ("0.86.0" (1 2 3)))
-+   *nyacc-version*))
-+
-+(define (progress o)
-+  (when (and o (getenv "NYACC_DEBUG"))
-+    (display "    :" (current-error-port))
-+    (display o (current-error-port))
-+    (display "\n" (current-error-port))))
-+
-+(define (insert-progress-monitors act-v len-v)
-+  (let ((n (vector-length act-v)))
-+    (let loop ((ix 0))
-+      (when (< ix n)
-+	(if (memq ix need-progress)
-+	    (vector-set
-+	     act-v ix
-+	     (lambda args
-+	       (progress (list-ref args (1- (vector-ref len-v ix))))
-+	       (apply (vector-ref act-v ix) args))))
-+        (loop (1+ ix))))))
-+
-+(cond-expand
-+ (guile
-+  (insert-progress-monitors (@@ (nyacc lang c99 parser) c99-act-v)
-+                            (@@ (nyacc lang c99 parser) c99-len-v)))
-+ (mes
-+  (insert-progress-monitors c99-act-v c99-len-v)))
-+
- (define (logf port string . rest)
-   (apply format (cons* port string rest))
-   (force-output port)
--- 
-2.18.0
-
-- 
cgit v1.2.3


From 247537da81095d3bc03dc210954910d1008bafd3 Mon Sep 17 00:00:00 2001
From: Leo Famulari <leo@famulari.name>
Date: Sat, 6 Oct 2018 22:43:35 -0400
Subject: gnu: borg: The backup client cannot override the server-side storage
 quota.

* gnu/packages/patches/borg-respect-storage-quota.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/backup.scm (borg)[source]: Use it.
---
 gnu/local.mk                                       |  1 +
 gnu/packages/backup.scm                            |  1 +
 .../patches/borg-respect-storage-quota.patch       | 32 ++++++++++++++++++++++
 3 files changed, 34 insertions(+)
 create mode 100644 gnu/packages/patches/borg-respect-storage-quota.patch

(limited to 'gnu')

diff --git a/gnu/local.mk b/gnu/local.mk
index 8be91c3708..ea2d650e28 100644
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@ -599,6 +599,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/binutils-loongson-workaround.patch	\
   %D%/packages/patches/blast+-fix-makefile.patch		\
   %D%/packages/patches/boost-fix-icu-build.patch		\
+  %D%/packages/patches/borg-respect-storage-quota.patch		\
   %D%/packages/patches/byobu-writable-status.patch		\
   %D%/packages/patches/cairo-CVE-2016-9082.patch			\
   %D%/packages/patches/calibre-no-updates-dialog.patch		\
diff --git a/gnu/packages/backup.scm b/gnu/packages/backup.scm
index ea5bc8e398..408b64b48d 100644
--- a/gnu/packages/backup.scm
+++ b/gnu/packages/backup.scm
@@ -498,6 +498,7 @@ detection, and lossless compression.")
      (origin
        (method url-fetch)
        (uri (pypi-uri "borgbackup" version))
+       (patches (search-patches "borg-respect-storage-quota.patch"))
        (sha256
         (base32
          "1p3zia62vyg9vadkdjzzkzbj4dmgijr7ix5lmhfbxpwy5q9imdgp"))
diff --git a/gnu/packages/patches/borg-respect-storage-quota.patch b/gnu/packages/patches/borg-respect-storage-quota.patch
new file mode 100644
index 0000000000..d23d1ffc01
--- /dev/null
+++ b/gnu/packages/patches/borg-respect-storage-quota.patch
@@ -0,0 +1,32 @@
+Make sure the client respects the storage quota set by the server:
+
+https://github.com/borgbackup/borg/issues/4093
+
+Patch copied from upstream source repository:
+
+https://github.com/borgbackup/borg/commit/975cc33206e0e3644626fb7204c34d2157715b61
+
+From 975cc33206e0e3644626fb7204c34d2157715b61 Mon Sep 17 00:00:00 2001
+From: Manu <manu@snapdragon.cc>
+Date: Wed, 3 Oct 2018 23:47:36 +0800
+Subject: [PATCH] Add storage_quota for forced_result if set by serve command.
+
+---
+ src/borg/archiver.py | 1 +
+ 1 file changed, 1 insertion(+)
+
+diff --git a/src/borg/archiver.py b/src/borg/archiver.py
+index 916725e7..279194c1 100644
+--- a/src/borg/archiver.py
++++ b/src/borg/archiver.py
+@@ -4276,6 +4276,7 @@ def get_args(self, argv, cmd):
+             result.restrict_to_paths = forced_result.restrict_to_paths
+             result.restrict_to_repositories = forced_result.restrict_to_repositories
+             result.append_only = forced_result.append_only
++            result.storage_quota = forced_result.storage_quota
+         return result
+ 
+     def parse_args(self, args=None):
+-- 
+2.19.1
+
-- 
cgit v1.2.3


From cd220e60da3add3884aef7cc0ab8f4b9e8fb2e3c Mon Sep 17 00:00:00 2001
From: Leo Famulari <leo@famulari.name>
Date: Sun, 7 Oct 2018 15:08:46 -0400
Subject: gnu: ncmpc: Update to 0.32.

* gnu/packages/mpd.scm (ncmpc): Update to 0.32.
[inputs]: Add boost, pcre, and python-sphinx. Remove glib.
[arguments]: Install the man pages correctly. Remove unnecessary configure flag.
---
 gnu/packages/mpd.scm | 16 +++++++++++-----
 1 file changed, 11 insertions(+), 5 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/mpd.scm b/gnu/packages/mpd.scm
index c024152dda..3e69ddba69 100644
--- a/gnu/packages/mpd.scm
+++ b/gnu/packages/mpd.scm
@@ -47,6 +47,7 @@
   #:use-module (gnu packages linux)
   #:use-module (gnu packages mp3)
   #:use-module (gnu packages ncurses)
+  #:use-module (gnu packages pcre)
   #:use-module (gnu packages pkg-config)
   #:use-module (gnu packages python)
   #:use-module (gnu packages pulseaudio)
@@ -186,7 +187,7 @@ player daemon.")
 (define-public ncmpc
   (package
     (name "ncmpc")
-    (version "0.30")
+    (version "0.32")
     (source (origin
               (method url-fetch)
               (uri
@@ -195,11 +196,14 @@ player daemon.")
                               "/ncmpc-" version ".tar.xz"))
               (sha256
                (base32
-                "18qj3cgqczgfk334x0ywxwa1ckrk9fbjyp34n4zzcxwaifshrzp3"))))
+                "1b01q1pcaw5yyhvmlffc3h0r3w8qy7rhn55a7xj4qkcfqvs8ap08"))))
     (build-system meson-build-system)
     (arguments
      `(#:configure-flags
-       (list "-Dcurses=ncurses")
+       ;; Otherwise, they are installed incorrectly, in
+       ;; '$out/share/man/man/man1'.
+       (list (string-append "-Dmandir=" (assoc-ref %outputs "out")
+                            "/share"))
        #:phases
        (modify-phases %standard-phases
          (add-before 'configure 'expand-C++-include-path
@@ -211,11 +215,13 @@ player daemon.")
                (setenv path (string-append c++ ":" (getenv path)))
                #t))))))
     (inputs `(("gcc", gcc-8)            ; for its C++14 support
-              ("glib" ,glib)
+              ("boost" ,boost)
+              ("pcre" ,pcre)
               ("libmpdclient" ,libmpdclient)
               ("ncurses" ,ncurses)))
     (native-inputs `(("gettext" ,gettext-minimal) ; for xgettext
-                     ("pkg-config" ,pkg-config)))
+                     ("pkg-config" ,pkg-config)
+                     ("python-sphinx" ,python-sphinx)))
     (synopsis "Curses Music Player Daemon client")
     (description "ncmpc is a fully featured MPD client, which runs in a
 terminal using ncurses.")
-- 
cgit v1.2.3


From 68afb9dccf91cc1a58b6db405befa176b191d809 Mon Sep 17 00:00:00 2001
From: Leo Famulari <leo@famulari.name>
Date: Thu, 4 Oct 2018 11:30:23 -0400
Subject: build-system/glib-or-gtk: Build 'in-source' by default.

* guix/build-system/glib-or-gtk.scm (glib-or-gtk-build): Change to
'out-of-source? #f'.
* gnu/packages/audio.scm (audacity)[arguments]: Use the default 'out-of-source?'
setting.
* gnu/packages/libreoffice.scm (libreoffice): Likewise.
---
 gnu/packages/audio.scm            | 5 -----
 gnu/packages/libreoffice.scm      | 3 ---
 guix/build-system/glib-or-gtk.scm | 2 +-
 3 files changed, 1 insertion(+), 9 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/audio.scm b/gnu/packages/audio.scm
index 434efab953..17b6363f7c 100644
--- a/gnu/packages/audio.scm
+++ b/gnu/packages/audio.scm
@@ -413,11 +413,6 @@ engineers, musicians, soundtrack editors and composers.")
              (substitute* "src/prefs/MidiIOPrefs.cpp"
                (("../../lib-src/portmidi/pm_common/portmidi.h") "portmidi.h"))
              #t)))
-       ;; The translation Makefile generation is performed improperly for
-       ;; out-of-tree builds.
-       ;; XXX This can be removed if the glib-or-gkt-build-system
-       ;; switches to #:out-of-source? #t. See <https://bugs.gnu.org/32887>.
-       #:out-of-source? #f
        ;; The test suite is not "well exercised" according to the developers,
        ;; and fails with various errors.  See
        ;; <http://sourceforge.net/p/audacity/mailman/message/33524292/>.
diff --git a/gnu/packages/libreoffice.scm b/gnu/packages/libreoffice.scm
index 881cf2008d..e5ab5c5071 100644
--- a/gnu/packages/libreoffice.scm
+++ b/gnu/packages/libreoffice.scm
@@ -1018,9 +1018,6 @@ converting QuarkXPress file format.  It supports versions 3.1 to 4.1.")
     (arguments
      `(#:tests? #f ; Building the tests already fails.
        #:make-flags '("build-nocheck") ; Do not build unit tests, which fails.
-       ;; XXX Remove this if glib-or-gtk-build-system changes to in-source-tree
-       ;; builds by default.
-       #:out-of-source? #f
        #:phases
          (modify-phases %standard-phases
            (add-before 'configure 'prepare-src
diff --git a/guix/build-system/glib-or-gtk.scm b/guix/build-system/glib-or-gtk.scm
index 621e68e0ab..fcd92f2334 100644
--- a/guix/build-system/glib-or-gtk.scm
+++ b/guix/build-system/glib-or-gtk.scm
@@ -112,7 +112,7 @@
                             (configure-flags ''())
                             ;; Disable icon theme cache generation.
                             (make-flags ''("gtk_update_icon_cache=true"))
-                            (out-of-source? #t)
+                            (out-of-source? #f)
                             (tests? #t)
                             (test-target "check")
                             (parallel-build? #t)
-- 
cgit v1.2.3


From a18accba468beecf0200383f56d02894caf6f41a Mon Sep 17 00:00:00 2001
From: Leo Famulari <leo@famulari.name>
Date: Sun, 7 Oct 2018 20:15:31 -0400
Subject: gnu: Remove Go 1.10.

* gnu/packages/golang.scm (go-1.10): Remove variable.
(go-1.11)[arguments]: Remove unnecessary environment variable from
'set-bootstrap-variables' phase.
---
 gnu/packages/golang.scm | 128 ++++--------------------------------------------
 1 file changed, 10 insertions(+), 118 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/golang.scm b/gnu/packages/golang.scm
index 7a049e39e1..7f26fbdab6 100644
--- a/gnu/packages/golang.scm
+++ b/gnu/packages/golang.scm
@@ -386,123 +386,9 @@ in the style of communicating sequential processes (@dfn{CSP}).")
        ,@(package-native-inputs go-1.4)))
     (supported-systems %supported-systems)))
 
-(define-public go-1.10
-  (package
-    (inherit go-1.9)
-    (name "go")
-    (version "1.10.4")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (string-append "https://storage.googleapis.com/golang/"
-                           name version ".src.tar.gz"))
-       (sha256
-        (base32
-         "10ap5pan71y2hdwzv4cg8wx4sy8fkcz5520rm1ldjg25xmjlkr3g"))))
-    (arguments
-     (substitute-keyword-arguments (package-arguments go-1.9)
-       ((#:phases phases)
-        `(modify-phases ,phases
-           (replace 'prebuild
-             (lambda* (#:key inputs outputs #:allow-other-keys)
-               (let* ((gcclib (string-append (assoc-ref inputs "gcc:lib") "/lib"))
-                      (ld (string-append (assoc-ref inputs "libc") "/lib"))
-                      (loader (car (find-files ld "^ld-linux.+")))
-                      (net-base (assoc-ref inputs "net-base"))
-                      (tzdata-path
-                       (string-append (assoc-ref inputs "tzdata") "/share/zoneinfo"))
-                      (output (assoc-ref outputs "out")))
-
-                 ;; Removing net/ tests, which fail when attempting to access
-                 ;; network resources not present in the build container.
-                 (for-each delete-file
-                           '("net/listen_test.go"
-                             "net/parse_test.go"
-                             "net/cgo_unix_test.go"))
-
-                 (substitute* "os/os_test.go"
-                   (("/usr/bin") (getcwd))
-                   (("/bin/pwd") (which "pwd"))
-                   (("/bin/sh") (which "sh")))
-
-                 ;; Add libgcc to runpath
-                 (substitute* "cmd/link/internal/ld/lib.go"
-                   (("!rpath.set") "true"))
-                 (substitute* "cmd/go/internal/work/gccgo.go"
-                   (("cgoldflags := \\[\\]string\\{\\}")
-                    (string-append "cgoldflags := []string{"
-                                   "\"-rpath=" gcclib "\""
-                                   "}"))
-                   (("\"-lgcc_s\", ")
-                    (string-append
-                     "\"-Wl,-rpath=" gcclib "\", \"-lgcc_s\", ")))
-                 (substitute* "cmd/go/internal/work/gc.go"
-                   (("ldflags = setextld\\(ldflags, compiler\\)")
-                    (string-append
-                     "ldflags = setextld(ldflags, compiler)\n"
-                     "ldflags = append(ldflags, \"-r\")\n"
-                     "ldflags = append(ldflags, \"" gcclib "\")\n")))
-
-                 ;; Disable failing tests: these tests attempt to access
-                 ;; commands or network resources which are neither available
-                 ;; nor necessary for the build to succeed.
-                 (for-each
-                  (match-lambda
-                    ((file regex)
-                     (substitute* file
-                       ((regex all before test_name)
-                        (string-append before "Disabled" test_name)))))
-                  '(("net/net_test.go" "(.+)(TestShutdownUnix.+)")
-                    ("net/dial_test.go" "(.+)(TestDialTimeout.+)")
-                    ("os/os_test.go" "(.+)(TestHostname.+)")
-                    ("time/format_test.go" "(.+)(TestParseInSydney.+)")
-                    ("time/format_test.go" "(.+)(TestParseInLocation.+)")
-                    ("os/exec/exec_test.go" "(.+)(TestEcho.+)")
-                    ("os/exec/exec_test.go" "(.+)(TestCommandRelativeName.+)")
-                    ("os/exec/exec_test.go" "(.+)(TestCatStdin.+)")
-                    ("os/exec/exec_test.go" "(.+)(TestCatGoodAndBadFile.+)")
-                    ("os/exec/exec_test.go" "(.+)(TestExitStatus.+)")
-                    ("os/exec/exec_test.go" "(.+)(TestPipes.+)")
-                    ("os/exec/exec_test.go" "(.+)(TestStdinClose.+)")
-                    ("os/exec/exec_test.go" "(.+)(TestIgnorePipeErrorOnSuccess.+)")
-                    ("syscall/syscall_unix_test.go" "(.+)(TestPassFD\\(.+)")
-                    ("os/exec/exec_test.go" "(.+)(TestExtraFiles/areturn.+)")
-                    ("cmd/go/go_test.go" "(.+)(TestCoverageWithCgo.+)")
-                    ("cmd/go/go_test.go" "(.+)(TestTwoPkgConfigs.+)")
-                    ("os/exec/exec_test.go" "(.+)(TestOutputStderrCapture.+)")
-                    ("os/exec/exec_test.go" "(.+)(TestExtraFiles.+)")
-                    ("os/exec/exec_test.go" "(.+)(TestExtraFilesRace.+)")
-                    ("net/lookup_test.go" "(.+)(TestLookupPort.+)")
-                    ("syscall/exec_linux_test.go"
-                     "(.+)(TestCloneNEWUSERAndRemapNoRootDisableSetgroups.+)")))
-
-                 ;; fix shebang for testar script
-                 ;; note the target script is generated at build time.
-                 (substitute* "../misc/cgo/testcarchive/carchive_test.go"
-                   (("#!/usr/bin/env") (string-append "#!" (which "env"))))
-
-                 (substitute* "net/lookup_unix.go"
-                   (("/etc/protocols") (string-append net-base "/etc/protocols")))
-                 (substitute* "net/port_unix.go"
-                   (("/etc/services") (string-append net-base "/etc/services")))
-                 (substitute* "time/zoneinfo_unix.go"
-                   (("/usr/share/zoneinfo/") tzdata-path))
-                 (substitute* (find-files "cmd" "\\.go")
-                   (("/lib(64)?/ld-linux.*\\.so\\.[0-9]") loader))
-                 #t)))
-           (replace 'set-bootstrap-variables
-             (lambda* (#:key outputs inputs #:allow-other-keys)
-               ;; Tell the build system where to find the bootstrap Go.
-               (let ((go  (assoc-ref inputs "go")))
-                 (setenv "GOROOT_BOOTSTRAP" go)
-                 (setenv "GOGC" "400")
-                 ;; Go 1.10 tries to write to $HOME in a test
-                 (setenv "HOME" "/tmp")
-                 #t)))))))))
-
 (define-public go-1.11
   (package
-    (inherit go-1.10)
+    (inherit go-1.9)
     (name "go")
     (version "1.11.1")
     (source
@@ -514,7 +400,7 @@ in the style of communicating sequential processes (@dfn{CSP}).")
         (base32
          "05qivf2f59pv4bfrmdr4m0xvswkmvvl9c5a2h5dy45g2k8b8r3sm"))))
     (arguments
-     (substitute-keyword-arguments (package-arguments go-1.10)
+     (substitute-keyword-arguments (package-arguments go-1.9)
        ((#:phases phases)
         `(modify-phases ,phases
            (replace 'prebuild
@@ -533,7 +419,7 @@ in the style of communicating sequential processes (@dfn{CSP}).")
                            '("net/listen_test.go"
                              "net/parse_test.go"
                              "net/cgo_unix_test.go"
-                             ;; A side affect of these test scripts is testing
+                             ;; A side effect of these test scripts is testing
                              ;; cgo. Attempts at using cgo flags and
                              ;; directives with these scripts as specified
                              ;; here (https://golang.org/cmd/cgo/) have not
@@ -616,7 +502,13 @@ in the style of communicating sequential processes (@dfn{CSP}).")
                    (("/usr/share/zoneinfo/") tzdata-path))
                  (substitute* (find-files "cmd" "\\.go")
                    (("/lib(64)?/ld-linux.*\\.so\\.[0-9]") loader))
-                 #t)))))))))
+                 #t)))
+           (replace 'set-bootstrap-variables
+             (lambda* (#:key outputs inputs #:allow-other-keys)
+               ;; Tell the build system where to find the bootstrap Go.
+               (let ((go  (assoc-ref inputs "go")))
+                 (setenv "GOROOT_BOOTSTRAP" go)
+                 (setenv "GOGC" "400"))))))))))
 
 (define-public go go-1.9)
 
-- 
cgit v1.2.3