From 471ceb5e5e809af3fa398a14cd402480c9c293cd Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sat, 21 Nov 2020 07:36:40 +0100 Subject: gnu: r-mzr: Fix linking. * gnu/packages/bioinformatics.scm (r-mzr)[arguments]: Fix linking with rhdf5 libraries. --- gnu/packages/bioinformatics.scm | 9 +++++++-- 1 file changed, 7 insertions(+), 2 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 788a947347..14a9775323 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -9701,9 +9701,14 @@ proteomics packages.") (lambda _ (substitute* "src/Makevars" (("\\./boost/libs.*") "") - (("ARCH_OBJS=" line) + ;; This is to avoid having a plain directory on the list of + ;; libraries to link. + (("\\(RHDF5_LIBS\\)" match) + (string-append match "/libhdf5.a")) + (("PKG_LIBS=") "PKG_LIBS=$(BOOST_LIBS) ") + (("\\ARCH_OBJS=" line) (string-append line - "\nARCH_LIBS=-lboost_system -lboost_regex \ + "\nBOOST_LIBS=-lboost_system -lboost_regex \ -lboost_iostreams -lboost_thread -lboost_filesystem -lboost_chrono\n"))) #t))))) (inputs -- cgit v1.2.3