From 3b8a3f554811f675bc68d997476dabd8bf82ae1f Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 25 Oct 2018 05:16:34 +0200 Subject: gnu: Add r-tmb. * gnu/packages/cran.scm (r-tmb): New variable. --- gnu/packages/cran.scm | 28 ++++++++++++++++++++++++++++ 1 file changed, 28 insertions(+) (limited to 'gnu') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index a75c19a1f1..77eb389bdd 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6455,3 +6455,31 @@ convenient functionality for users, but also a common set of functions that can be easily used by developers working on a variety of R packages for Bayesian modeling.") (license license:gpl3+))) + +(define-public r-tmb + (package + (name "r-tmb") + (version "1.7.14") + (source + (origin + (method url-fetch) + (uri (cran-uri "TMB" version)) + (sha256 + (base32 + "0bpc504nz8xfwr8ack52dj4hpjcykn6zyf8n228z32dw9d5n96dl")))) + (properties `((upstream-name . "TMB"))) + (build-system r-build-system) + (propagated-inputs + `(("r-matrix" ,r-matrix) + ("r-rcppeigen" ,r-rcppeigen))) + (home-page "http://tmb-project.org") + (synopsis "Template model builder: a general random effect tool") + (description + "With this tool, a user should be able to quickly implement complex +random effect models through simple C++ templates. The package combines +@code{CppAD} (C++ automatic differentiation), @code{Eigen} (templated +matrix-vector library) and @code{CHOLMOD} (sparse matrix routines available +from R) to obtain an efficient implementation of the applied Laplace +approximation with exact derivatives. Key features are: Automatic sparseness +detection, parallelism through BLAS and parallel user templates.") + (license license:gpl2))) -- cgit v1.2.3