From 614a8977cbac1f7ac27a908764eeb5542f32e52e Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 20 Nov 2015 15:14:55 +0100 Subject: gnu: ngs-java: Update to 1.2.2. * gnu/packages/bioinformatics.scm (ngs-java): Update to 1.2.2. [arguments]: Remove build phase "fix-java-symlink-installation". --- gnu/packages/bioinformatics.scm | 22 ++-------------------- 1 file changed, 2 insertions(+), 20 deletions(-) (limited to 'gnu/packages') diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 955aa48f55..017f233cba 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -2389,26 +2389,8 @@ simultaneously.") (srfi srfi-26)) ,@(package-arguments ngs-sdk)) ((#:phases phases) - `(alist-cons-after - 'enter-dir 'fix-java-symlink-installation - (lambda _ - ;; Only replace the version suffix, not the version number in - ;; the directory name. Reported here: - ;; https://github.com/ncbi/ngs/pull/4 - (substitute* "Makefile.java" - (((string-append "\\$\\(subst " - "(\\$\\(VERSION[^\\)]*\\))," - "(\\$\\([^\\)]+\\))," - "(\\$\\([^\\)]+\\)|\\$\\@)" - "\\)") - _ pattern replacement target) - (string-append "$(patsubst " - "%" pattern "," - "%" replacement "," - target ")")))) - (alist-replace - 'enter-dir (lambda _ (chdir "ngs-java") #t) - ,phases)))))) + `(modify-phases ,phases + (replace 'enter-dir (lambda _ (chdir "ngs-java") #t))))))) (inputs `(("jdk" ,icedtea6 "jdk") ("ngs-sdk" ,ngs-sdk))) -- cgit v1.2.3