From 17d95689b4d152a53fbb88c49b8693f967cff881 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 17 Dec 2020 11:36:26 +0100 Subject: gnu: r-coverageview: Move from "experiment" to "package" section. * gnu/packages/bioconductor.scm (r-coverageview): Move variable. --- gnu/packages/bioconductor.scm | 54 +++++++++++++++++++++---------------------- 1 file changed, 27 insertions(+), 27 deletions(-) (limited to 'gnu/packages') diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 41cbcf68e4..c84bdfd681 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1156,33 +1156,6 @@ mouse, rat and budding yeast. Mapping data between common gene IDs for budding yeast are also included.") (license license:gpl2+))) -(define-public r-coverageview - (package - (name "r-coverageview") - (version "1.28.0") - (source (origin - (method url-fetch) - (uri (bioconductor-uri "CoverageView" version)) - (sha256 - (base32 - "1k89gzqhd8ca8s9gk5bfzringnc5nayqbwzwwy35fls1cg96qmsj")))) - (build-system r-build-system) - (propagated-inputs - `(("r-s4vectors" ,r-s4vectors) - ("r-iranges" ,r-iranges) - ("r-genomicranges" ,r-genomicranges) - ("r-genomicalignments" ,r-genomicalignments) - ("r-rtracklayer" ,r-rtracklayer) - ("r-rsamtools" ,r-rsamtools))) - (home-page "https://bioconductor.org/packages/CoverageView/") - (synopsis "Coverage visualization package for R") - (description "This package provides a framework for the visualization of -genome coverage profiles. It can be used for ChIP-seq experiments, but it can -be also used for genome-wide nucleosome positioning experiments or other -experiment types where it is important to have a framework in order to inspect -how the coverage distributed across the genome.") - (license license:artistic2.0))) - (define-public r-cummerbund (package (name "r-cummerbund") @@ -1289,6 +1262,33 @@ of Bioconductor.") packages.") (license license:artistic2.0))) +(define-public r-coverageview + (package + (name "r-coverageview") + (version "1.28.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "CoverageView" version)) + (sha256 + (base32 + "1k89gzqhd8ca8s9gk5bfzringnc5nayqbwzwwy35fls1cg96qmsj")))) + (build-system r-build-system) + (propagated-inputs + `(("r-s4vectors" ,r-s4vectors) + ("r-iranges" ,r-iranges) + ("r-genomicranges" ,r-genomicranges) + ("r-genomicalignments" ,r-genomicalignments) + ("r-rtracklayer" ,r-rtracklayer) + ("r-rsamtools" ,r-rsamtools))) + (home-page "https://bioconductor.org/packages/CoverageView/") + (synopsis "Coverage visualization package for R") + (description "This package provides a framework for the visualization of +genome coverage profiles. It can be used for ChIP-seq experiments, but it can +be also used for genome-wide nucleosome positioning experiments or other +experiment types where it is important to have a framework in order to inspect +how the coverage distributed across the genome.") + (license license:artistic2.0))) + (define-public r-affycomp (package (name "r-affycomp") -- cgit v1.2.3