From 8733d2c235bf067d9aed9a8150b49ac1e5034f75 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Thu, 9 Sep 2021 19:26:54 +0300
Subject: gnu: Add julia-quadgk.

* gnu/packages/julia-xyz.scm (julia-quadgk): New variable.
---
 gnu/packages/julia-xyz.scm | 25 +++++++++++++++++++++++++
 1 file changed, 25 insertions(+)

(limited to 'gnu/packages/julia-xyz.scm')

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index a80964c2b0..6b89f1768e 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -2985,6 +2985,31 @@ everything from run time algorithm choice to code generation at compile time.")
 human-readable format.")
     (license license:expat)))
 
+(define-public julia-quadgk
+  (package
+    (name "julia-quadgk")
+    (version "2.4.1")
+    (source
+      (origin
+        (method git-fetch)
+        (uri (git-reference
+               (url "https://github.com/JuliaMath/QuadGK.jl")
+               (commit (string-append "v" version))))
+        (file-name (git-file-name name version))
+        (sha256
+         (base32 "1hy0629yai6xflgxaflk9764lzr1lzhlghimxk1aqi212q9c6n33"))))
+    (build-system julia-build-system)
+    (propagated-inputs
+     `(("julia-datastructures" ,julia-datastructures)))
+    (home-page "https://github.com/JuliaMath/QuadGK.jl")
+    (synopsis "Adaptive 1d numerical Gauss–Kronrod integration")
+    (description "This package provides support for one-dimensional numerical
+integration in Julia using adaptive Gauss-Kronrod quadrature.  The code was
+originally part of Base Julia.  It supports integration of arbitrary numeric
+types, including arbitrary precision (@code{BigFloat}), and even integration of
+arbitrary normed vector spaces (e.g. matrix-valued integrands).")
+    (license license:expat)))
+
 (define-public julia-quadmath
   (package
     (name "julia-quadmath")
-- 
cgit v1.2.3


From 55e1fa89f11f3dd01efff363fa9347224ebc3401 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Thu, 9 Sep 2021 19:27:57 +0300
Subject: gnu: Add julia-measurements.

* gnu/packages/julia-xyz.scm (julia-measurements): New variable.
---
 gnu/packages/julia-xyz.scm | 31 +++++++++++++++++++++++++++++++
 1 file changed, 31 insertions(+)

(limited to 'gnu/packages/julia-xyz.scm')

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index 6b89f1768e..6c6dd99c1b 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -2433,6 +2433,37 @@ may include other factorizations such as the LQ factorization.")
 TLS} and cryptography C library for Julia.")
     (license license:expat)))
 
+(define-public julia-measurements
+  (package
+    (name "julia-measurements")
+    (version "2.6.0")
+    (source
+      (origin
+        (method git-fetch)
+        (uri (git-reference
+               (url "https://github.com/JuliaPhysics/Measurements.jl")
+               (commit (string-append "v" version))))
+        (file-name (git-file-name name version))
+        (sha256
+         (base32 "05p3f0gr4sv4maq8cix5fi8ldq0zagswqsd43xn6fhy046f936mz"))))
+    (build-system julia-build-system)
+    (propagated-inputs
+     `(("julia-calculus" ,julia-calculus)
+       ("julia-recipesbase" ,julia-recipesbase)
+       ("julia-requires" ,julia-requires)))
+    (native-inputs
+     `(("julia-quadgk" ,julia-quadgk)
+       ("julia-specialfunctions" ,julia-specialfunctions)
+       ("julia-unitful" ,julia-unitful)))
+    (home-page "https://juliaphysics.github.io/Measurements.jl/stable/")
+    (synopsis "Error propagation calculator and library")
+    (description "@code{Measurements.jl} is an error propagation calculator and
+library for physical measurements.  It supports real and complex numbers with
+uncertainty, arbitrary precision calculations, operations with arrays, and
+numerical integration.  The linear error propagation theory is employed to
+propagate the errors.")
+    (license license:expat)))
+
 (define-public julia-measures
   (package
     (name "julia-measures")
-- 
cgit v1.2.3


From 25bb6f08223b19c609def67fe7ca7cdb54164e6a Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Thu, 9 Sep 2021 19:57:20 +0300
Subject: gnu: Add julia-mlstyle.

* gnu/packages/julia-xyz.scm (julia-mlstyle): New variable.
---
 gnu/packages/julia-xyz.scm | 22 ++++++++++++++++++++++
 1 file changed, 22 insertions(+)

(limited to 'gnu/packages/julia-xyz.scm')

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index 6c6dd99c1b..1b738a98a7 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -2508,6 +2508,28 @@ resolving them into absolute units.")
 with @code{missing} values in Julia.")
     (license license:expat)))
 
+(define-public julia-mlstyle
+  (package
+    (name "julia-mlstyle")
+    (version "0.4.10")
+    (source
+      (origin
+        (method git-fetch)
+        (uri (git-reference
+               (url "https://github.com/thautwarm/MLStyle.jl")
+               (commit (string-append "v" version))))
+        (file-name (git-file-name name version))
+        (sha256
+         (base32 "0h1cd7cr4c4cnpqyj3180113gdbvcc047lqphp8a8gq5smp3c059"))))
+    (build-system julia-build-system)
+    (native-inputs
+     `(("julia-datastructures" ,julia-datastructures)))
+    (home-page "https://thautwarm.github.io/MLStyle.jl/latest/")
+    (synopsis "Julia functional programming infrastructures")
+    (description "This package provides consistent and extensible functional
+programming infrastructures, and metaprogramming facilities.")
+    (license license:expat)))
+
 (define-public julia-mocking
   (package
     (name "julia-mocking")
-- 
cgit v1.2.3


From 3893f1366990e0f5a30b143df56e862d7cc40b06 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Thu, 9 Sep 2021 20:08:29 +0300
Subject: gnu: Add julia-pycall.

* gnu/packages/julia-xyz.scm (julia-pycall): New variable.
---
 gnu/packages/julia-xyz.scm | 79 +++++++++++++++++++++++++++++++++++++++++++++-
 1 file changed, 78 insertions(+), 1 deletion(-)

(limited to 'gnu/packages/julia-xyz.scm')

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index 1b738a98a7..16d0d71eb2 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -26,7 +26,9 @@
   #:use-module (guix git-download)
   #:use-module (guix build-system julia)
   #:use-module (gnu packages gcc)
-  #:use-module (gnu packages julia-jll))
+  #:use-module (gnu packages julia-jll)
+  #:use-module (gnu packages python)
+  #:use-module (gnu packages python-xyz))
 
 (define-public julia-abstractffts
   (package
@@ -3038,6 +3040,81 @@ everything from run time algorithm choice to code generation at compile time.")
 human-readable format.")
     (license license:expat)))
 
+(define-public julia-pycall
+  (package
+    (name "julia-pycall")
+    (version "1.92.3")
+    (source
+      (origin
+        (method git-fetch)
+        (uri (git-reference
+               (url "https://github.com/JuliaPy/PyCall.jl")
+               (commit (string-append "v" version))))
+        (file-name (git-file-name name version))
+        (sha256
+         (base32
+          "07r99ni6nkxpyrp3wsb5qg4jxz7i2r08dyqbiffy2zm3g0bn88jq"))))
+    (build-system julia-build-system)
+    (arguments
+     `(#:imported-modules ((guix build python-build-system)
+                           ,@%julia-build-system-modules)
+       #:modules ((guix build julia-build-system)
+                  (guix build utils)
+                  ((guix build python-build-system) #:prefix python:))
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'remove-conda
+           (lambda _
+             (substitute* "Project.toml"
+               ((".*Conda.*") ""))
+             (substitute* (list "src/PyCall.jl"
+                                "test/runtests.jl")
+               (("import Conda") ""))
+             (substitute* "deps/depsutils.jl"
+               (("Conda.PYTHONDIR") "\"/\""))
+             #t))
+         (add-after 'unpack 'set-python
+           (lambda* (#:key inputs outputs #:allow-other-keys)
+             (let ((python (assoc-ref inputs "python")))
+               (setenv "PYCALL_JL_RUNTIME_PYTHON"
+                       (string-append python "/bin/python3"))
+               (with-output-to-file "deps/deps.jl"
+                 (lambda _
+                   (format #t
+                           "const python = \"~a/bin/python3\"~@
+                           const pyprogramname = \"~a/bin/python3\"~@
+                           const libpython = \"~a/lib/libpython~a.so.1.0\"~@
+                           const PYTHONHOME = \"~a\"~@
+                           const pyversion_build = v\"~a\"~@
+                           const conda = false~%"
+                           python
+                           python
+                           python
+                           (python:python-version python)
+                           python
+                           ,(package-version python))))
+               #t)))
+         (add-before 'check 'pre-check
+           (lambda _
+             (setenv "CI" "true")
+             (setenv "JULIA_PKGEVAL" "true")
+             #t)))))
+    (propagated-inputs
+     `(("julia-macrotools" ,julia-macrotools)
+       ("julia-versionparsing" ,julia-versionparsing)))
+    (inputs
+     `(("python" ,python)))
+    (native-inputs
+     `(("python-numpy" ,python-numpy)))
+    (home-page "https://github.com/JuliaPy/PyCall.jl")
+    (synopsis "Call Python functions from the Julia language")
+    (description "This package provides the ability to directly call and fully
+interoperate with Python from the Julia language.  You can import arbitrary
+Python modules from Julia, call Python functions (with automatic conversion of
+types between Julia and Python), define Python classes from Julia methods, and
+share large data structures between Julia and Python without copying them.")
+    (license license:expat)))
+
 (define-public julia-quadgk
   (package
     (name "julia-quadgk")
-- 
cgit v1.2.3


From 60d3484f7c4a1c5a459d5e98bf44390a6bbc36ab Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Thu, 9 Sep 2021 20:51:57 +0300
Subject: gnu: Add julia-ansicoloredprinters.

* gnu/packages/julia-xyz.scm (julia-ansicoloredprinters): New variable.
---
 gnu/packages/julia-xyz.scm | 20 ++++++++++++++++++++
 1 file changed, 20 insertions(+)

(limited to 'gnu/packages/julia-xyz.scm')

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index 16d0d71eb2..c4255c7226 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -100,6 +100,26 @@ acts like @code{convert(T, x)}, but without the restriction of returning a
 be GPU compatible without throwing away the wrapper.")
     (license license:expat)))
 
+(define-public julia-ansicoloredprinters
+  (package
+    (name "julia-ansicoloredprinters")
+    (version "0.0.1")
+    (source
+      (origin
+        (method git-fetch)
+        (uri (git-reference
+               (url "https://github.com/JuliaDocs/ANSIColoredPrinters.jl")
+               (commit (string-append "v" version))))
+        (file-name (git-file-name name version))
+        (sha256
+         (base32 "0dp5agljr0g50s5gn0pr70wrz01ggck6pb40ay3l4szhswq7mqzf"))))
+    (build-system julia-build-system)
+    (home-page "https://github.com/JuliaDocs/ANSIColoredPrinters.jl")
+    (synopsis "ANSI escape code translator")
+    (description "@code{ANSIColoredPrinters.jl} converts a text qualified by
+ANSI escape codes to another format.")
+    (license license:expat)))
+
 (define-public julia-aqua
   (package
     (name "julia-aqua")
-- 
cgit v1.2.3


From 647edfd0d38fd1e365d11e7ae3cafb9558b91319 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Tue, 14 Sep 2021 15:43:30 +0300
Subject: gnu: Add julia-sass.

* gnu/packages/julia-xyz.scm (julia-sass): New variable.
---
 gnu/packages/julia-xyz.scm | 22 ++++++++++++++++++++++
 1 file changed, 22 insertions(+)

(limited to 'gnu/packages/julia-xyz.scm')

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index c4255c7226..aac2a246a0 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -3578,6 +3578,28 @@ through matrix-vector multiplication.")
 a loadable module.")
       (license license:expat))))
 
+(define-public julia-sass
+  (package
+    (name "julia-sass")
+    (version "0.2.0")
+    (source
+      (origin
+        (method git-fetch)
+        (uri (git-reference
+               (url "https://github.com/piever/Sass.jl")
+               (commit (string-append "v" version))))
+        (file-name (git-file-name name version))
+        (sha256
+         (base32 "0y7kkkj717h5cj659ssry89i5r64symr6pvhr6vv4qmaxrnjxj92"))))
+    (build-system julia-build-system)
+    (propagated-inputs
+     `(("julia-libsass-jll" ,julia-libsass-jll)))
+    (home-page "https://github.com/piever/Sass.jl")
+    (synopsis "Compile scss and sass file to css")
+    (description "This package provides a simple Julian API to use the
+@code{libsass} library to compile scss and sass files to css.")
+    (license license:expat)))
+
 (define-public julia-scratch
   (package
     (name "julia-scratch")
-- 
cgit v1.2.3


From 7b59508ca711d1fe299de3f8d9710da36aeb6829 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Tue, 14 Sep 2021 15:49:51 +0300
Subject: gnu: Add julia-documenter.

These four variables are added in the same commit to avoid a cyclic
dependency.

* gnu/packages/julia-xyz.scm (julia-documenter,
julia-documentermarkdown, julia-documentertools): New variables.
(julia-documenter-bootstrap): New hidden variable.
---
 gnu/packages/julia-xyz.scm | 125 ++++++++++++++++++++++++++++++++++++++++++++-
 1 file changed, 124 insertions(+), 1 deletion(-)

(limited to 'gnu/packages/julia-xyz.scm')

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index aac2a246a0..492fdd9175 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -22,13 +22,15 @@
 (define-module (gnu packages julia-xyz)
   #:use-module ((guix licenses) #:prefix license:)
   #:use-module (gnu packages)
+  #:use-module (guix utils)
   #:use-module (guix packages)
   #:use-module (guix git-download)
   #:use-module (guix build-system julia)
   #:use-module (gnu packages gcc)
   #:use-module (gnu packages julia-jll)
   #:use-module (gnu packages python)
-  #:use-module (gnu packages python-xyz))
+  #:use-module (gnu packages python-xyz)
+  #:use-module (gnu packages version-control))
 
 (define-public julia-abstractffts
   (package
@@ -992,6 +994,127 @@ cases that including them with the default Julia installation is not seen as
 valuable enough at this time.")
     (license license:expat)))
 
+;; By removing all the javascript and css downloads any HTML documentation
+;; produced by this package will not be very useful.
+(define-public julia-documenter
+  (package
+    (name "julia-documenter")
+    (version "0.27.7")
+    (source
+      (origin
+        (method git-fetch)
+        (uri (git-reference
+               (url "https://github.com/JuliaDocs/Documenter.jl")
+               (commit (string-append "v" version))))
+        (file-name (git-file-name name version))
+        (sha256
+         (base32 "00ai3c24i3fkn5plmavampcxm0ijhwk0v5cn9xwm7rvbjnnvaaam"))))
+    (build-system julia-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'patch-source
+           (lambda* (#:key inputs #:allow-other-keys)
+             (substitute* "src/Deps.jl"
+               (("pip install")
+                (string-append (assoc-ref inputs "python")
+                               "/bin/pip install")))
+             #t))
+         (add-after 'unpack 'remove-javascript-downloads
+           (lambda _
+             (substitute* "src/Writers/HTMLWriter.jl"
+               (("cdnjs.cloudflare.com") "example.com"))
+             ;; Removing the javascript downloads causes these tests fail.
+             (substitute* "test/examples/tests.jl"
+               ((".*Main\\.examples_html_doc.*") "")
+               ((".*Main\\.examples_html_mathjax3_doc.*") ""))
+             #t)))))
+    (propagated-inputs
+     `(("julia-ansicoloredprinters" ,julia-ansicoloredprinters)
+       ("julia-docstringextensions" ,julia-docstringextensions)
+       ("julia-iocapture" ,julia-iocapture)
+       ("julia-json" ,julia-json)))
+    (inputs
+     `(("python" ,python-wrapper)))
+    (native-inputs
+     `(("git" ,git-minimal)
+       ("julia-documentermarkdown" ,julia-documentermarkdown)
+       ("julia-documentertools" ,julia-documentertools)))
+    (home-page "https://juliadocs.github.io/Documenter.jl")
+    (synopsis "Documentation generator for Julia")
+    (description "This package provides a documentation generator for Julia.")
+    (license license:expat)))
+
+(define julia-documenter-bootstrap
+  (package
+    (inherit julia-documenter)
+    (name "julia-documenter-bootstrap")
+    (arguments
+     (substitute-keyword-arguments (package-arguments julia-documenter)
+       ((#:phases phases)
+        `(modify-phases ,phases
+           (delete 'patch-source)))
+       ;; Not all dependencies available in bootstrap version.
+       ((#:tests? _ #f) #f)))
+    (inputs `())
+    (native-inputs `())))
+
+(define-public julia-documentermarkdown
+  (package
+    (name "julia-documentermarkdown")
+    (version "0.2.2")
+    (source
+      (origin
+        (method git-fetch)
+        (uri (git-reference
+               (url "https://github.com/JuliaDocs/DocumenterMarkdown.jl")
+               (commit (string-append "v" version))))
+        (file-name (git-file-name name version))
+        (sha256
+         (base32 "0sx89hi5p2f8zi2rp5qrv06m270d90pxj5d2y5cxls1spax7wqx8"))))
+    (build-system julia-build-system)
+    (inputs
+     ;; We don't want to propagate the bootstrap version.
+     ;; Cycle with Documenter.jl in later versions.
+     `(("julia-documenter" ,julia-documenter-bootstrap)))
+    (home-page "https://github.com/JuliaDocs/DocumenterMarkdown.jl")
+    (synopsis "Documenter's Markdown")
+    (description "This package enables the Markdown / MkDocs backend of
+@code{Documenter.jl}.")
+    (license license:expat)))
+
+(define-public julia-documentertools
+  (package
+    (name "julia-documentertools")
+    (version "0.1.13")
+    (source
+      (origin
+        (method git-fetch)
+        (uri (git-reference
+               (url "https://github.com/JuliaDocs/DocumenterTools.jl")
+               (commit (string-append "v" version))))
+        (file-name (git-file-name name version))
+        (sha256
+         (base32 "05p57p8xlkn42m1lv9gq4hl96vp7hpj19d51p828ai1rbpcpi3a6"))))
+    (build-system julia-build-system)
+    (arguments
+     `(#:tests? #f))    ; Tests require network.
+    (inputs
+     ;; We don't want to propagate the bootstrap version.
+     ;; Cycle with Documenter.jl in later versions.
+     `(("julia-documenter" ,julia-documenter-bootstrap)))
+    (propagated-inputs
+     `(("julia-docstringextensions" ,julia-docstringextensions)
+       ("julia-gumbo" ,julia-gumbo)
+       ("julia-sass" ,julia-sass)))
+    (native-inputs
+     `(("julia-example" ,julia-example)))
+    (home-page "https://github.com/JuliaDocs/DocumenterTools.jl")
+    (synopsis "Extra tools for setting up Documenter.jl")
+    (description "This package contains utilities for setting up documentation
+generation with @code{Documenter.jl}.")
+    (license license:expat)))
+
 (define-public julia-diffresults
   (package
     (name "julia-diffresults")
-- 
cgit v1.2.3


From f126ac0017c926d07f22bc2c8522f2ef65c1a042 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Tue, 5 Oct 2021 22:15:56 +0300
Subject: gnu: julia-aqua: Update to 0.5.1.

* gnu/packages/julia-xyz.scm (julia-aqua): Update to 0.5.1.
---
 gnu/packages/julia-xyz.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/julia-xyz.scm')

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index 492fdd9175..cbfd68e9af 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -125,7 +125,7 @@ ANSI escape codes to another format.")
 (define-public julia-aqua
   (package
     (name "julia-aqua")
-    (version "0.5.0")
+    (version "0.5.1")
     (source
       (origin
         (method git-fetch)
@@ -134,7 +134,7 @@ ANSI escape codes to another format.")
                (commit (string-append "v" version))))
         (file-name (git-file-name name version))
         (sha256
-         (base32 "0zcvrwnyhh2kr4d2xv7ps8dh7byw78dx6yb1m9m4dblgscn5kypb"))))
+         (base32 "1g0kyzcdykgs247j72jpc2qqall696jwgb3hnn4cxmbi8bkf7wpk"))))
     (build-system julia-build-system)
     (home-page "https://github.com/JuliaTesting/Aqua.jl")
     (synopsis "Automated quality assurance for Julia packages")
-- 
cgit v1.2.3


From d13e8acb9f9773cfe9eaf14f54fb5a98488ac70e Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Wed, 6 Oct 2021 08:20:10 +0300
Subject: gnu: julia-fillarrays: Update to 0.12.6.

* gnu/packages/julia-xyz.scm (julia-fillarrays): Update to 0.12.6.
---
 gnu/packages/julia-xyz.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/julia-xyz.scm')

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index cbfd68e9af..1c83246504 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -1387,7 +1387,7 @@ working with filesystem paths in Julia.")
 (define-public julia-fillarrays
   (package
     (name "julia-fillarrays")
-    (version "0.12.1")
+    (version "0.12.6")
     (source
      (origin
        (method git-fetch)
@@ -1396,7 +1396,7 @@ working with filesystem paths in Julia.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1va8vvcxbxcy5xp487hdqfp0ps3m8q0819xrxygsf5135azp3qrh"))))
+        (base32 "1sx96pzrgyh8k7x2w8vmyi6cazlmp7rg1n7wbl47qfzqjggka6kz"))))
     (build-system julia-build-system)
     (inputs                             ;required by tests
      `(("julia-staticarrays" ,julia-staticarrays)))
-- 
cgit v1.2.3


From 20246050419518232765b4946d8bb90fc65e0da2 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Wed, 6 Oct 2021 08:20:07 +0300
Subject: gnu: julia-arraylayouts: Update to 0.7.6.

* gnu/packages/julia-xyz.scm (julia-arraylayouts): Update to 0.7.6.
---
 gnu/packages/julia-xyz.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/julia-xyz.scm')

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index 1c83246504..7041920250 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -181,7 +181,7 @@ no issues with the upgrade.")
 (define-public julia-arraylayouts
   (package
     (name "julia-arraylayouts")
-    (version "0.7.3")
+    (version "0.7.6")
     (source
       (origin
         (method git-fetch)
@@ -190,7 +190,7 @@ no issues with the upgrade.")
                (commit (string-append "v" version))))
         (file-name (git-file-name name version))
         (sha256
-         (base32 "0ri05xhfrj2909c6yy09qm6zi8v8s5fvmbbwbg8qgjq0yxnviw32"))))
+         (base32 "05q62pks8j23pgbrfny072rrwzrz6q19l68srnjxxv39ncmdmrvg"))))
     (build-system julia-build-system)
     (propagated-inputs
      `(("julia-fillarrays" ,julia-fillarrays)))
-- 
cgit v1.2.3


From d03819603612d8b346d7385a92cda6b442e7c395 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Wed, 6 Oct 2021 10:32:50 +0300
Subject: gnu: julia-blockarrays: Update to 0.16.8.

* gnu/packages/julia-xyz.scm (julia-blockarrays): Update to 0.16.8.
---
 gnu/packages/julia-xyz.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/julia-xyz.scm')

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index 7041920250..2d42ab63a8 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -307,7 +307,7 @@ benchmarks as well as comparing benchmark results.")
 (define-public julia-blockarrays
   (package
     (name "julia-blockarrays")
-    (version "0.16.3")
+    (version "0.16.8")
     (source
       (origin
         (method git-fetch)
@@ -316,7 +316,7 @@ benchmarks as well as comparing benchmark results.")
                (commit (string-append "v" version))))
         (file-name (git-file-name name version))
         (sha256
-         (base32 "1f9pnnfv97vww2dxklpx8pa2k85fw2l3pzsj7n28nws1xlwnj96c"))))
+         (base32 "1by26036fk9mawmcgqxpwizgbs398v9p6vrbsgg7h6llqn3q9iw1"))))
     (build-system julia-build-system)
     (propagated-inputs
      `(("julia-arraylayouts" ,julia-arraylayouts)
-- 
cgit v1.2.3


From 9a24fc61917c7328d205ee9c8bad198ddc9131d6 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Wed, 6 Oct 2021 10:39:22 +0300
Subject: gnu: julia-colorschemes: Update to 3.15.0.

* gnu/packages/julia-xyz.scm (julia-colorschemes): Update to 3.15.0.
---
 gnu/packages/julia-xyz.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/julia-xyz.scm')

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index 2d42ab63a8..2086e6dc3d 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -567,7 +567,7 @@ color scales for graphics.")
 (define-public julia-colorschemes
   (package
     (name "julia-colorschemes")
-    (version "3.13.0")
+    (version "3.15.0")
     (source
       (origin
         (method git-fetch)
@@ -576,7 +576,7 @@ color scales for graphics.")
                (commit (string-append "v" version))))
         (file-name (git-file-name name version))
         (sha256
-         (base32 "13gy1njxlkfnxmpj2z6aj1bzbzn7jipaxr9fgkv41yiy0xjhqiyh"))))
+         (base32 "0kpjhmqd5cj8dh8bmh9b5g6bscyp7h23hzpr2s93pnrp57q1wvhq"))))
     (build-system julia-build-system)
     (propagated-inputs
      `(("julia-colors" ,julia-colors)
-- 
cgit v1.2.3


From e538d868a57c2127b56f983f439d6714ebfbea41 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Wed, 6 Oct 2021 14:58:53 +0300
Subject: gnu: julia-colorvectorspace: Update to 0.9.7.

* gnu/packages/julia-xyz.scm (julia-colorvectorspace): Update to 0.9.7.
---
 gnu/packages/julia-xyz.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/julia-xyz.scm')

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index 2086e6dc3d..11f705068b 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -617,7 +617,7 @@ with.")
 (define-public julia-colorvectorspace
   (package
     (name "julia-colorvectorspace")
-    (version "0.9.5")
+    (version "0.9.7")
     (source
       (origin
         (method git-fetch)
@@ -626,7 +626,7 @@ with.")
                (commit (string-append "v" version))))
         (file-name (git-file-name name version))
         (sha256
-         (base32 "1gx4k1bvf6lkzxphnvpkw857ihrkifhb68yvsj889k9pf1vda3fq"))))
+         (base32 "02gk7f5g5wjxdasbjf8bvv1m7clksh7mw1xmygjdirjz1q0d6dwi"))))
     (build-system julia-build-system)
     (propagated-inputs
      `(("julia-colortypes" ,julia-colortypes)
-- 
cgit v1.2.3


From ad970a219d5cc0b4acafd4bc153cd474f54a62b9 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Wed, 6 Oct 2021 16:11:51 +0300
Subject: gnu: julia-compat: Update to 3.39.0.

* gnu/packages/julia-xyz.scm (julia-compat): Update to 3.39.0.
---
 gnu/packages/julia-xyz.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/julia-xyz.scm')

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index 11f705068b..4fd1f3137d 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -687,7 +687,7 @@ common subexpression elimination.")
 (define-public julia-compat
   (package
     (name "julia-compat")
-    (version "3.32.0")
+    (version "3.39.0")
     (source
      (origin
        (method git-fetch)
@@ -696,7 +696,7 @@ common subexpression elimination.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1zif3dj0a85w7xqbg0chrdhw8dk410zxcqbnkf764xmylwbps498"))))
+        (base32 "0qzvaqi5gqgc747fnajbvvf5vqbh6cwykwky00c7glvmvdsgk3z0"))))
     (build-system julia-build-system)
     (home-page "https://github.com/JuliaLang/Compat.jl")
     (synopsis "Compatibility across Julia versions")
-- 
cgit v1.2.3


From babfdf7549f018ca7c1cd0df25665de0310120bf Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Wed, 6 Oct 2021 16:16:42 +0300
Subject: gnu: julia-missings: Update to 1.0.2.

* gnu/packages/julia-xyz.scm (julia-missings): Update to 1.0.2.
---
 gnu/packages/julia-xyz.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/julia-xyz.scm')

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index 4fd1f3137d..6d507e0eeb 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -2634,7 +2634,7 @@ resolving them into absolute units.")
 (define-public julia-missings
   (package
     (name "julia-missings")
-    (version "1.0.0")
+    (version "1.0.2")
     (source
       (origin
         (method git-fetch)
@@ -2643,7 +2643,7 @@ resolving them into absolute units.")
                (commit (string-append "v" version))))
         (file-name (git-file-name name version))
         (sha256
-         (base32 "131ma44yvswvj85jdjhm37frzfz46cc60lwj65a9jcmgc77dshsm"))))
+         (base32 "1k481rm5lahmjyh34j177d4n10svgr0wm7ps5m3ar3xx6nr26ad5"))))
     (build-system julia-build-system)
     (propagated-inputs
      `(("julia-dataapi" ,julia-dataapi)))
-- 
cgit v1.2.3


From 443ad586ba6034ee34ec5496a7565358217370ac Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Wed, 6 Oct 2021 16:17:54 +0300
Subject: gnu: julia-mocking: Update to 0.7.3.

* gnu/packages/julia-xyz.scm (julia-mocking): Update to 0.7.3.
[propagated-inputs]: Add julia-compat.
---
 gnu/packages/julia-xyz.scm | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

(limited to 'gnu/packages/julia-xyz.scm')

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index 6d507e0eeb..2ec067c6bf 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -2678,7 +2678,7 @@ programming infrastructures, and metaprogramming facilities.")
 (define-public julia-mocking
   (package
     (name "julia-mocking")
-    (version "0.7.1")
+    (version "0.7.3")
     (source
       (origin
         (method git-fetch)
@@ -2687,10 +2687,11 @@ programming infrastructures, and metaprogramming facilities.")
                (commit (string-append "v" version))))
         (file-name (git-file-name name version))
         (sha256
-         (base32 "10jz716v6i3gpd403rmcrip6cncjl9lqr12cdl321x1994a5g8ck"))))
+         (base32 "1cg2is83bjmrchmmxcgx57k8c9b9vlamrw38v4fdhbb6d4six5cg"))))
     (build-system julia-build-system)
     (propagated-inputs
-     `(("julia-exprtools" ,julia-exprtools)))
+     `(("julia-compat" ,julia-compat)
+       ("julia-exprtools" ,julia-exprtools)))
     (home-page "https://github.com/invenia/Mocking.jl")
     (synopsis "Overload Julia function calls")
     (description "The purpose of this package is to allow Julia function calls
-- 
cgit v1.2.3


From 235456d601ccd6c993349ab8cecd8a3ac448eafd Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Wed, 6 Oct 2021 16:19:50 +0300
Subject: gnu: julia-plotutils: Update to 1.0.15.

* gnu/packages/julia-xyz.scm (julia-plotutils): Update to 1.0.15.
---
 gnu/packages/julia-xyz.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/julia-xyz.scm')

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index 2ec067c6bf..ef2fd75ace 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -3054,7 +3054,7 @@ actual computation.")
 (define-public julia-plotutils
   (package
     (name "julia-plotutils")
-    (version "1.0.11")
+    (version "1.0.15")
     (source
       (origin
         (method git-fetch)
@@ -3063,7 +3063,7 @@ actual computation.")
                (commit (string-append "v" version))))
         (file-name (git-file-name name version))
         (sha256
-         (base32 "0pqd3yvs3w48sr50c8rcqk5pzvpdy9nf4kimcvyz9dvwc3jgh6rd"))))
+         (base32 "12aw5gkkcfhpczv2w510k65w1j0hjnh825ihimi223v8plsi5105"))))
     (build-system julia-build-system)
     (propagated-inputs
      `(("julia-colors" ,julia-colors)
-- 
cgit v1.2.3


From ddec49858a27cf68fd39b2ff61514cca87329a5e Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Wed, 6 Oct 2021 16:20:14 +0300
Subject: gnu: julia-pooledarrays: Update to 1.3.0.

* gnu/packages/julia-xyz.scm (julia-pooledarrays): Update to 1.3.0.
---
 gnu/packages/julia-xyz.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/julia-xyz.scm')

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index ef2fd75ace..4c1fab8dfa 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -3080,7 +3080,7 @@ plotting components.")
 (define-public julia-pooledarrays
   (package
     (name "julia-pooledarrays")
-    (version "1.2.1")
+    (version "1.3.0")
     (source
       (origin
         (method git-fetch)
@@ -3089,7 +3089,7 @@ plotting components.")
                (commit (string-append "v" version))))
         (file-name (git-file-name name version))
         (sha256
-         (base32 "0ihvhzkxdw4qf0i6sbrickhdcwkmlin9zyixxn9xvgzm8nc0iwqy"))))
+         (base32 "0qdwvf1p5z6z0q4s4hn85ysd8wq47zy6hlzddc5ijvhk86ccqlrr"))))
     (build-system julia-build-system)
     (propagated-inputs
      `(("julia-dataapi" ,julia-dataapi)))
-- 
cgit v1.2.3


From 09ee0df82e2622972505d660541048f870b54fd1 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Thu, 7 Oct 2021 10:05:40 +0300
Subject: gnu: julia-reexport: Update to 1.2.2.

* gnu/packages/julia-xyz.scm (julia-reexport): Update to 1.2.2.
---
 gnu/packages/julia-xyz.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/julia-xyz.scm')

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index 4c1fab8dfa..7c68a6f42f 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -3502,7 +3502,7 @@ recursive arrays like arrays of arrays.")
 (define-public julia-reexport
   (package
     (name "julia-reexport")
-    (version "1.1.0")
+    (version "1.2.2")
     (source
      (origin
        (method git-fetch)
@@ -3511,7 +3511,7 @@ recursive arrays like arrays of arrays.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1wj4vnxxmnblm6ajkkdvwb7v4835qrrc406q5is74qv1n68xql7l"))))
+        (base32 "0inf5q6f01ncd5c5wm8mwzv2hs627ng6xlh8dhrlflp321hbamwf"))))
     (build-system julia-build-system)
     (home-page "https://github.com/simonster/Reexport.jl")
     (synopsis "Re-export modules and symbols")
-- 
cgit v1.2.3


From d6bebca94d15b1201bb49884025ac352b3c0f4c8 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Thu, 7 Oct 2021 12:00:35 +0300
Subject: gnu: julia-staticarrays: Update to 1.2.13.

* gnu/packages/julia-xyz.scm (julia-staticarrays): Update to 1.2.13.
---
 gnu/packages/julia-xyz.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/julia-xyz.scm')

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index 7c68a6f42f..a3871982f4 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -3969,7 +3969,7 @@ types and a common interface that is shared between them.")
 (define-public julia-staticarrays
   (package
     (name "julia-staticarrays")
-    (version "1.2.9")
+    (version "1.2.13")
     (source
      (origin
        (method git-fetch)
@@ -3978,7 +3978,7 @@ types and a common interface that is shared between them.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1902bl9p96mfq7d1rbilwp98wz2g82ml9svcgx7sczglyjbs4nsk"))))
+        (base32 "041mijzgzm8r61a3gwspr2wcxjikqksvj2rbnl4gmcy41alqmx79"))))
     (build-system julia-build-system)
     (inputs
      `(("julia-benchmarktools" ,julia-benchmarktools)))
-- 
cgit v1.2.3


From 28f0a15be2d9ba13236d65a2a68fd0ebbfc59b11 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Thu, 7 Oct 2021 14:23:11 +0300
Subject: gnu: julia-nnlib: Update to 0.7.29.

* gnu/packages/julia-xyz.scm (julia-nnlib): Update to 0.7.29.
---
 gnu/packages/julia-xyz.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/julia-xyz.scm')

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index a3871982f4..3009f46262 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -2828,7 +2828,7 @@ interface to interact with these types.")
 (define-public julia-nnlib
   (package
     (name "julia-nnlib")
-    (version "0.7.25")
+    (version "0.7.29")
     (source
       (origin
         (method git-fetch)
@@ -2837,7 +2837,7 @@ interface to interact with these types.")
                (commit (string-append "v" version))))
         (file-name (git-file-name name version))
         (sha256
-         (base32 "0vp4kcn9ivkhmqgkyvnabcdqi6pv7ghbmjc1llkwv1kzhylyf86p"))))
+         (base32 "16vn5w5274kcywh1xp0zqjk5q10xrk125aznz5av6wifwrvghk8s"))))
     (build-system julia-build-system)
     (arguments
      `(#:tests? #f      ; Test suite not updated for ChainRulesTestUtils-1.0.
-- 
cgit v1.2.3


From d92bd679951d1dfc0bc2ab8c7c84672aa286711c Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Thu, 7 Oct 2021 14:24:05 +0300
Subject: gnu: julia-nnlib: Enable tests.

* gnu/packages/julia-xyz.scm (julia-nnlib)[arguments]: Don't skip tests.
Rename drop-cuda-support phase to skip-cuda-tests and remove extra call
to cuda library.
---
 gnu/packages/julia-xyz.scm | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

(limited to 'gnu/packages/julia-xyz.scm')

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index 3009f46262..ff0977a41e 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -2840,13 +2840,13 @@ interface to interact with these types.")
          (base32 "16vn5w5274kcywh1xp0zqjk5q10xrk125aznz5av6wifwrvghk8s"))))
     (build-system julia-build-system)
     (arguments
-     `(#:tests? #f      ; Test suite not updated for ChainRulesTestUtils-1.0.
-       #:phases
+     `(#:phases
        (modify-phases %standard-phases
-         (add-after 'unpack 'drop-cuda-support
+         (add-after 'unpack 'skip-cuda-tests
            (lambda _
              (substitute* "test/runtests.jl"
-               (("using CUDA") ""))
+               (("using CUDA") "")
+               (("&& CUDA\\.functional\\(\\)") ""))
              (setenv "NNLIB_TEST_CUDA" "false"))))))
     (propagated-inputs
      `(("julia-adapt" ,julia-adapt)
-- 
cgit v1.2.3


From 3c6ff2b9d11f04db3d03b171875463568babbed9 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Thu, 7 Oct 2021 15:02:05 +0300
Subject: gnu: julia-lazyarrays: Update to 0.22.2.

* gnu/packages/julia-xyz.scm (julia-lazyarrays): Update to 0.22.2.
---
 gnu/packages/julia-xyz.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/julia-xyz.scm')

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index ff0977a41e..8bfd9d32f1 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -2410,7 +2410,7 @@ focus on speed and slick struct mapping.")
 (define-public julia-lazyarrays
   (package
     (name "julia-lazyarrays")
-    (version "0.21.14")
+    (version "0.22.2")
     (source
       (origin
         (method git-fetch)
@@ -2419,7 +2419,7 @@ focus on speed and slick struct mapping.")
                (commit (string-append "v" version))))
         (file-name (git-file-name name version))
         (sha256
-         (base32 "130kqyfk0h17s9dr9r1p9n1dgvzzlb1jwn6pj14lwr83s36glpv1"))))
+         (base32 "17rhlrmgfvdw8w62pg32ikr9j4xy2ylr7mx7ar0hnpzryv929rp5"))))
     (build-system julia-build-system)
     (propagated-inputs
      `(("julia-arraylayouts" ,julia-arraylayouts)
-- 
cgit v1.2.3


From 58927767b81b7626f130760ce4ba1905421f2983 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Thu, 7 Oct 2021 16:10:35 +0300
Subject: gnu: julia-chainrulestestutils: Update to 1.2.3.

* gnu/packages/julia-xyz.scm (julia-chainrulestestutils): Update to 1.2.3.
---
 gnu/packages/julia-xyz.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/julia-xyz.scm')

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index 8bfd9d32f1..9acef0742b 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -509,7 +509,7 @@ sensitivities for functions without the need to depend on ChainRules itself.")
 (define-public julia-chainrulestestutils
   (package
     (name "julia-chainrulestestutils")
-    (version "1.0.0")
+    (version "1.2.3")
     (source
      (origin
        (method git-fetch)
@@ -518,7 +518,7 @@ sensitivities for functions without the need to depend on ChainRules itself.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "07l4sjc7avmmp4v1dsym1jyb46q4jsvv7i0yzszf72gj8d9k6lwa"))))
+        (base32 "1vlkyp72d514gyb4k3yhjl1g7f24ncmz61j56p4sdi9f76rk9fx9"))))
     (build-system julia-build-system)
     (propagated-inputs
      `(("julia-chainrulescore" ,julia-chainrulescore)
-- 
cgit v1.2.3


From 0d8886679726561e3ecc1c9db1263976107b8bc2 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Mon, 4 Oct 2021 15:33:22 +0300
Subject: gnu: Add julia-latexstrings.

* gnu/packages/julia-xyz.scm (julia-latexstrings): New variable.
---
 gnu/packages/julia-xyz.scm | 22 ++++++++++++++++++++++
 1 file changed, 22 insertions(+)

(limited to 'gnu/packages/julia-xyz.scm')

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index 9acef0742b..3876b409e9 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -2407,6 +2407,28 @@ and printing JSON documents.")
 focus on speed and slick struct mapping.")
     (license license:expat)))
 
+(define-public julia-latexstrings
+  (package
+    (name "julia-latexstrings")
+    (version "1.2.1")
+    (source
+      (origin
+        (method git-fetch)
+        (uri (git-reference
+               (url "https://github.com/stevengj/LaTeXStrings.jl")
+               (commit (string-append "v" version))))
+        (file-name (git-file-name name version))
+        (sha256
+         (base32 "117z27krcf8fydgp6mb0pgn75r4gng9qs7v90qb4bqzsry3faadp"))))
+    (build-system julia-build-system)
+    (native-inputs
+     `(("julia-documenter" ,julia-documenter)))
+    (home-page "https://github.com/stevengj/LaTeXStrings.jl")
+    (synopsis "Input and display of LaTeX equation strings")
+    (description "This is a small package to make it easier to type LaTeX
+equations in string literals in the Julia language.")
+    (license license:expat)))
+
 (define-public julia-lazyarrays
   (package
     (name "julia-lazyarrays")
-- 
cgit v1.2.3


From 726a78b8bc490757736edf1187d479aac335a783 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Mon, 4 Oct 2021 15:37:57 +0300
Subject: gnu: Add julia-pyplot.

* gnu/packages/julia-xyz.scm (julia-pyplot): New variable.
---
 gnu/packages/julia-xyz.scm | 29 +++++++++++++++++++++++++++++
 1 file changed, 29 insertions(+)

(limited to 'gnu/packages/julia-xyz.scm')

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index 3876b409e9..ecfcd8ef77 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -3281,6 +3281,35 @@ types between Julia and Python), define Python classes from Julia methods, and
 share large data structures between Julia and Python without copying them.")
     (license license:expat)))
 
+(define-public julia-pyplot
+  (package
+    (name "julia-pyplot")
+    (version "2.10.0")
+    (source
+      (origin
+        (method git-fetch)
+        (uri (git-reference
+               (url "https://github.com/JuliaPy/PyPlot.jl")
+               (commit (string-append "v" version))))
+        (file-name (git-file-name name version))
+        (sha256
+         (base32 "007zs0imfgs69f30pp2a3rc93kl0qiq7qjx6ig35z4wzkmps4skd"))))
+    (build-system julia-build-system)
+    (propagated-inputs
+     `(("julia-colors" ,julia-colors)
+       ("julia-latexstrings" ,julia-latexstrings)
+       ("julia-pycall" ,julia-pycall)
+       ("julia-versionparsing" ,julia-versionparsing)
+       ;; python-matplotlib is expected to be available at runtime.
+       ("python-matplotlib" ,python-matplotlib)))
+    (home-page "https://github.com/JuliaPy/PyPlot.jl")
+    (synopsis "Plotting for Julia based on matplotlib.pyplot")
+    (description "This package provides a Julia interface to the Matplotlib
+plotting library from Python, and specifically to the @code{matplotlib.pyplot}
+module.  PyPlot uses the Julia PyCall package to call Matplotlib directly from
+Julia with little or no overhead (arrays are passed without making a copy).")
+    (license license:expat)))
+
 (define-public julia-quadgk
   (package
     (name "julia-quadgk")
-- 
cgit v1.2.3


From bfde12f7197fbc64f6be3fc1c818d9f22960582b Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Mon, 4 Oct 2021 15:40:18 +0300
Subject: gnu: Add julia-dataframes.

* gnu/packages/julia-xyz.scm (julia-dataframes): New variable.
---
 gnu/packages/julia-xyz.scm | 57 ++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 57 insertions(+)

(limited to 'gnu/packages/julia-xyz.scm')

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index ecfcd8ef77..9cd83281d1 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -806,6 +806,63 @@ moving the function definition to DataAPI.jl and each package taking a
 dependency on it.")
     (license license:expat)))
 
+(define-public julia-dataframes
+  (package
+    (name "julia-dataframes")
+    (version "1.2.2")
+    (source
+      (origin
+        (method git-fetch)
+        (uri (git-reference
+               (url "https://github.com/JuliaData/DataFrames.jl")
+               (commit (string-append "v" version))))
+        (file-name (git-file-name name version))
+        (sha256
+         (base32 "1bk0amrghgjrkyn1mm4ac23swwbgszl1d0qyl9137qj5zvv9dasp"))))
+    (build-system julia-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'skip-failing-test
+           (lambda _
+             ;; Tests with non-standard colors.
+             (substitute* "test/show.jl"
+               (("test (sprint\\(show, df, context=:color=>true)" _ test)
+                (string-append "test_nowarn " test)))
+             (substitute* "test/io.jl"
+               (("testset \\\"improved.*" all)
+                (string-append all "return\n")))
+             (substitute* "test/join.jl"
+               (("test (levels\\(outerjoin\\(B)" _ test)
+                (string-append "test_nowarn " test)))
+             #t)))))
+    (propagated-inputs
+     `(("julia-dataapi" ,julia-dataapi)
+       ("julia-invertedindices" ,julia-invertedindices)
+       ("julia-iteratorinterfaceextensions" ,julia-iteratorinterfaceextensions)
+       ("julia-missings" ,julia-missings)
+       ("julia-pooledarrays" ,julia-pooledarrays)
+       ("julia-prettytables" ,julia-prettytables)
+       ("julia-reexport" ,julia-reexport)
+       ("julia-sortingalgorithms" ,julia-sortingalgorithms)
+       ("julia-tables" ,julia-tables)
+       ("julia-tabletraits" ,julia-tabletraits)))
+    (native-inputs
+     `(("julia-categoricalarrays" ,julia-categoricalarrays)
+       ("julia-combinatorics" ,julia-combinatorics)
+       ("julia-datastructures" ,julia-datastructures)
+       ("julia-datavalues" ,julia-datavalues)
+       ("julia-offsetarrays" ,julia-offsetarrays)
+       ("julia-unitful" ,julia-unitful)))
+    (home-page "https://dataframes.juliadata.org/stable/")
+    (synopsis "In-memory tabular data")
+    (description "This package provides a set of tools for working with tabular
+data in Julia.  Its design and functionality are similar to those of Pandas from
+Python or @code{data.frame}, @code{data.table} and @code{dplyr} from R, making
+it a great general purpose data science tool, especially for those coming to
+Julia from R or Python.")
+    (license license:expat)))
+
 (define-public julia-datastructures
   (package
     (name "julia-datastructures")
-- 
cgit v1.2.3


From 4ea3215d8f18453e6b8ff0a46654e52b5741c3e6 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Mon, 4 Oct 2021 15:40:57 +0300
Subject: gnu: Add julia-bson.

* gnu/packages/julia-xyz.scm (julia-bson): New variable.
---
 gnu/packages/julia-xyz.scm | 23 +++++++++++++++++++++++
 1 file changed, 23 insertions(+)

(limited to 'gnu/packages/julia-xyz.scm')

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index 9cd83281d1..a9ae66d588 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -368,6 +368,29 @@ A @code{BlockBandedMatrix} is a subtype of @code{BlockMatrix} of
 @code{BlockArrays.jl} whose layout of non-zero blocks is banded.")
     (license license:expat)))
 
+(define-public julia-bson
+  (package
+    (name "julia-bson")
+    (version "0.3.3")
+    (source
+      (origin
+        (method git-fetch)
+        (uri (git-reference
+               (url "https://github.com/JuliaIO/BSON.jl")
+               (commit (string-append "v" version))))
+        (file-name (git-file-name name version))
+        (sha256
+         (base32 "1l5608ma2ys7v2gpcqbiv9mwfc6yrlqkihrfx1pf7fgv5llhd4fn"))))
+    (build-system julia-build-system)
+    (native-inputs
+     `(("julia-dataframes" ,julia-dataframes)))
+    (home-page "https://github.com/JuliaIO/BSON.jl")
+    (synopsis "Binary JSON serialisation format")
+    (description "@code{BSON.jl} is a Julia package for working with the Binary
+JSON serialisation format.  It can be used as a general store for Julia data
+structures.")
+    (license license:expat)))
+
 (define-public julia-bufferedstreams
   (package
     (name "julia-bufferedstreams")
-- 
cgit v1.2.3


From 5ba67ed641ee7d670e3ef5037e6f0c34291a498d Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Mon, 4 Oct 2021 15:48:26 +0300
Subject: gnu: Add julia-expronicon.

* gnu/packages/julia-xyz.scm (julia-expronicon): New variable.
---
 gnu/packages/julia-xyz.scm | 34 ++++++++++++++++++++++++++++++++++
 1 file changed, 34 insertions(+)

(limited to 'gnu/packages/julia-xyz.scm')

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index a9ae66d588..6fcb0fceee 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -1347,6 +1347,40 @@ before (or after)\".")
       (description "This package provides various examples.")
       (license license:expat))))
 
+;; ExproniconLite.jl is autogenerated from this package.
+(define-public julia-expronicon
+  (package
+    (name "julia-expronicon")
+    (version "0.6.10")
+    (source
+      (origin
+        (method git-fetch)
+        (uri (git-reference
+               (url "https://github.com/Roger-luo/Expronicon.jl")
+               (commit (string-append "v" version))))
+        (file-name (git-file-name name version))
+        (sha256
+         (base32 "0h8aaynqlxrkn8575k5vqmhzil4vvxchhf0bcxa6zwawp558gj2y"))))
+    (build-system julia-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'skip-network-tests
+           (lambda _
+             (substitute* "test/runtests.jl"
+               ;; This test tries to access the Julia package registry.
+               ((".*expand\\.jl.*") "")))))))
+    (propagated-inputs
+     `(("julia-mlstyle" ,julia-mlstyle)))
+    (native-inputs
+     `(("julia-documenter" ,julia-documenter)))
+    (home-page "https://expronicon.rogerluo.dev/dev/")
+    (synopsis "Collective tools for metaprogramming on Julia Expr")
+    (description "This package provides a collection of tools for
+metaprogramming on Julia Expr, the meta programming standard library for
+@code{MLStyle}.")
+    (license license:expat)))
+
 (define-public julia-exprtools
   (package
     (name "julia-exprtools")
-- 
cgit v1.2.3


From 50026532a0392ff812cbc7d1c3ef888567b477ed Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Mon, 4 Oct 2021 15:52:26 +0300
Subject: gnu: Add julia-configurations.

* gnu/packages/julia-xyz.scm (julia-configurations): New variable.
---
 gnu/packages/julia-xyz.scm | 43 +++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 43 insertions(+)

(limited to 'gnu/packages/julia-xyz.scm')

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index 6fcb0fceee..c94d29fc8e 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -729,6 +729,49 @@ provides a macro that lets you use the latest syntax in a backwards-compatible
 way.")
     (license license:expat)))
 
+(define-public julia-configurations
+  (package
+    (name "julia-configurations")
+    (version "0.16.4")
+    (source
+      (origin
+        (method git-fetch)
+        (uri (git-reference
+               (url "https://github.com/Roger-luo/Configurations.jl")
+               (commit (string-append "v" version))))
+        (file-name (git-file-name name version))
+        (sha256
+         (base32 "1b23p0zk8dx2sf01cnw177mqci7qd81b9s32ixz9clsh0r0icl1b"))))
+    (build-system julia-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'fix-tests
+           (lambda _
+             (substitute* "test/runtests.jl"
+               (("option.toml") "test/option.toml"))
+             #t))
+         (add-after 'unpack 'dont-use-exproniconlite
+           (lambda _
+             (substitute* '("Project.toml"
+                            "src/Configurations.jl"
+                            "test/runtests.jl")
+               (("ExproniconLite") "Expronicon"))
+             (substitute* "Project.toml"
+               (("55351af7-c7e9-48d6-89ff-24e801d99491")
+                "6b7a57c9-7cc1-4fdf-b7f5-e857abae3636"))
+             #t)))))
+    (propagated-inputs
+     `(("julia-crayons" ,julia-crayons)
+       ("julia-expronicon" ,julia-expronicon)
+       ("julia-orderedcollections" ,julia-orderedcollections)))
+    (home-page "https://configurations.rogerluo.dev/stable/")
+    (synopsis "Tools for options and configurations in Julia")
+    (description "@code{Configurations.jl} provides a macro @code{@@option} to
+let you define @code{structs} to represent options/configurations, and serialize
+between different option/configuration file formats such as @code{TOML}.")
+    (license license:expat)))
+
 (define-public julia-constructionbase
   (package
     (name "julia-constructionbase")
-- 
cgit v1.2.3


From 03f6a44cfc46cd49886d7a7ec6429cc22dd97c9c Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Mon, 4 Oct 2021 16:01:52 +0300
Subject: gnu: Add julia-structarrays.

* gnu/packages/julia-xyz.scm (julia-structarrays): New variable.
---
 gnu/packages/julia-xyz.scm | 34 ++++++++++++++++++++++++++++++++++
 1 file changed, 34 insertions(+)

(limited to 'gnu/packages/julia-xyz.scm')

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index c94d29fc8e..c1ebc0fba1 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -4276,6 +4276,40 @@ are defined for @code{AbstractStrings}, and any iterator that define
 applied to any distance.")
     (license license:expat)))
 
+(define-public julia-structarrays
+  (package
+    (name "julia-structarrays")
+    (version "0.6.3")
+    (source
+      (origin
+        (method git-fetch)
+        (uri (git-reference
+               (url "https://github.com/JuliaArrays/StructArrays.jl")
+               (commit (string-append "v" version))))
+        (file-name (git-file-name name version))
+        (sha256
+         (base32 "0rjcpyjwzg70n87q5r9c5i1qzigavncslxssm3rk5a3y549py56v"))))
+    (build-system julia-build-system)
+    (propagated-inputs
+     `(("julia-dataapi" ,julia-dataapi)
+       ("julia-staticarrays" ,julia-staticarrays)
+       ("julia-tables" ,julia-tables)))
+    (native-inputs
+     `(("julia-documenter" ,julia-documenter)
+       ("julia-offsetarrays" ,julia-offsetarrays)
+       ("julia-pooledarrays" ,julia-pooledarrays)
+       ("julia-typedtables" ,julia-typedtables)
+       ("julia-weakrefstrings" ,julia-weakrefstrings)))
+    (home-page "https://github.com/JuliaArrays/StructArrays.jl")
+    (synopsis "Efficient implementation of struct arrays in Julia")
+    (description "This package introduces the type @code{StructArray} which is
+an @code{AbstractArray} whose elements are @code{struct} (for example
+@code{NamedTuples}, or @code{ComplexF64}, or a custom user defined
+@code{struct}).  While a @code{StructArray} iterates @code{structs}, the layout
+is column based (meaning each field of the @code{struct} is stored in a separate
+@code{Array}).")
+    (license license:expat)))
+
 (define-public julia-structtypes
   (package
     (name "julia-structtypes")
-- 
cgit v1.2.3