From ae1642600707e35e1541f8d488cd5ffb5699ecb2 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 18 Dec 2017 11:58:32 +0100 Subject: gnu: Add r-ica. * gnu/packages/cran.scm (r-ica): New variable. --- gnu/packages/cran.scm | 20 ++++++++++++++++++++ 1 file changed, 20 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 11d30815cf..24076c5ef4 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1642,3 +1642,23 @@ originally inspired by the book \"Visualizing Categorical Data\" by Michael Friendly and is now the main support package for a new book, \"Discrete Data Analysis with R\" by Michael Friendly and David Meyer (2015).") (license license:gpl2))) + +(define-public r-ica + (package + (name "r-ica") + (version "1.0-1") + (source + (origin + (method url-fetch) + (uri (cran-uri "ica" version)) + (sha256 + (base32 + "1bkl4a72l0k6gm82l3jxnib898z20cw17zg81jj39l9dn65rlmcq")))) + (build-system r-build-system) + (home-page "http://cran.r-project.org/web/packages/ica/") + (synopsis "Independent component analysis") + (description "This package provides tools for @dfn{Independent Component +Analysis} (ICA) using various algorithms: FastICA, +Information-Maximization (Infomax), and @dfn{Joint Approximate Diagonalization +of Eigenmatrices} (JADE).") + (license license:gpl2+))) -- cgit v1.2.3 From bf025ff6f2b922fd7a8c4205812842354c2cffae Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 18 Dec 2017 11:58:48 +0100 Subject: gnu: Add r-dtw. * gnu/packages/cran.scm (r-dtw): New variable. --- gnu/packages/cran.scm | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 24076c5ef4..e97069b968 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1662,3 +1662,26 @@ Analysis} (ICA) using various algorithms: FastICA, Information-Maximization (Infomax), and @dfn{Joint Approximate Diagonalization of Eigenmatrices} (JADE).") (license license:gpl2+))) + +(define-public r-dtw + (package + (name "r-dtw") + (version "1.18-1") + (source + (origin + (method url-fetch) + (uri (cran-uri "dtw" version)) + (sha256 + (base32 + "1b91vahba09cqlb8b1ry4dlv4rbldb4s2p6w52gmyw31vxdv5nnr")))) + (build-system r-build-system) + (propagated-inputs `(("r-proxy" ,r-proxy))) + (home-page "http://dtw.r-forge.r-project.org/") + (synopsis "Dynamic Time Warping Algorithms") + (description "This package provides a comprehensive implementation of +@dfn{dynamic time warping} (DTW) algorithms in R. DTW computes the +optimal (least cumulative distance) alignment between points of two time +series. Common DTW variants covered include local (slope) and global (window) +constraints, subsequence matches, arbitrary distance definitions, +normalizations, minimum variance matching, and so on.") + (license license:gpl2+))) -- cgit v1.2.3 From 15ef07f00e427c8bf136c054bb410608db64fe62 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 18 Dec 2017 11:59:00 +0100 Subject: gnu: Add r-sdmtools. * gnu/packages/cran.scm (r-sdmtools): New variable. --- gnu/packages/cran.scm | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index e97069b968..7708e3a425 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1685,3 +1685,27 @@ series. Common DTW variants covered include local (slope) and global (window) constraints, subsequence matches, arbitrary distance definitions, normalizations, minimum variance matching, and so on.") (license license:gpl2+))) + +(define-public r-sdmtools + (package + (name "r-sdmtools") + (version "1.1-221") + (source + (origin + (method url-fetch) + (uri (cran-uri "SDMTools" version)) + (sha256 + (base32 + "1kacrpamshv7wz83yn45sfbw4m9c44xrrngzcklnwx8gcxx2knm6")))) + (properties `((upstream-name . "SDMTools"))) + (build-system r-build-system) + (propagated-inputs `(("r-r-utils" ,r-r-utils))) + (home-page "http://www.rforge.net/SDMTools/") + (synopsis "Species distribution modelling tools") + (description "This packages provides a set of tools for post processing +the outcomes of species distribution modeling exercises. It includes novel +methods for comparing models and tracking changes in distributions through +time. It further includes methods for visualizing outcomes, selecting +thresholds, calculating measures of accuracy and landscape fragmentation +statistics, etc.") + (license license:gpl3+))) -- cgit v1.2.3 From ae3f207951c75cad3966f8a2feb2faec8cc63c59 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 18 Dec 2017 11:59:10 +0100 Subject: gnu: Add r-scatterplot3d. * gnu/packages/cran.scm (r-scatterplot3d): New variable. --- gnu/packages/cran.scm | 18 ++++++++++++++++++ 1 file changed, 18 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 7708e3a425..c5cc759385 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1709,3 +1709,21 @@ time. It further includes methods for visualizing outcomes, selecting thresholds, calculating measures of accuracy and landscape fragmentation statistics, etc.") (license license:gpl3+))) + +(define-public r-scatterplot3d + (package + (name "r-scatterplot3d") + (version "0.3-40") + (source + (origin + (method url-fetch) + (uri (cran-uri "scatterplot3d" version)) + (sha256 + (base32 + "0ababcj87kx7860mica9y2ydlhskxmgj9n46crx036cila512jc2")))) + (build-system r-build-system) + (home-page "http://cran.r-project.org/web/packages/scatterplot3d/") + (synopsis "3D scatter plot") + (description "This package provides an implementation of scatter plots for +plotting. a three dimensional point cloud.") + (license license:gpl2))) -- cgit v1.2.3 From f90018e56821397ae28fada1c4d823c3e0c8750e Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 18 Dec 2017 11:59:20 +0100 Subject: gnu: Add r-ggridges. * gnu/packages/cran.scm (r-ggridges): New variable. --- gnu/packages/cran.scm | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index c5cc759385..e0e44067aa 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1727,3 +1727,27 @@ statistics, etc.") (description "This package provides an implementation of scatter plots for plotting. a three dimensional point cloud.") (license license:gpl2))) + +(define-public r-ggridges + (package + (name "r-ggridges") + (version "0.4.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "ggridges" version)) + (sha256 + (base32 + "0kfa3icqdalqdg1klxjrhfl7if35d3wnsiyl86bprw5dyqyh3lh3")))) + (build-system r-build-system) + (propagated-inputs + `(("r-ggplot2" ,r-ggplot2) + ("r-plyr" ,r-plyr) + ("r-scales" ,r-scales))) + (home-page "https://github.com/clauswilke/ggridges") + (synopsis "Ridgeline plots in ggplot2") + (description + "Ridgeline plots provide a convenient way of visualizing changes in +distributions over time or space. This package enables the creation of such +plots in @code{ggplot2}.") + (license license:gpl2))) -- cgit v1.2.3 From 007f6d9885b81543b02489e503e51264677ed132 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 18 Dec 2017 11:59:28 +0100 Subject: gnu: Add r-ggjoy. * gnu/packages/cran.scm (r-ggjoy): New variable. --- gnu/packages/cran.scm | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index e0e44067aa..e7c9c6588a 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1751,3 +1751,25 @@ plotting. a three dimensional point cloud.") distributions over time or space. This package enables the creation of such plots in @code{ggplot2}.") (license license:gpl2))) + +(define-public r-ggjoy + (package + (name "r-ggjoy") + (version "0.4.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "ggjoy" version)) + (sha256 + (base32 + "1s24zn7gmk52bvjjhanxby7rxbnc2yfl0nx5nv7x7z0zja8gg7nb")))) + (build-system r-build-system) + (propagated-inputs + `(("r-ggplot2" ,r-ggplot2) + ("r-ggridges" ,r-ggridges))) + (home-page "https://github.com/clauswilke/ggjoy") + (synopsis "Joyplots in ggplot2") + (description "Joyplots provide a convenient way of visualizing changes in +distributions over time or space. This package enables the creation of such +plots in @code{ggplot2}.") + (license license:gpl2))) -- cgit v1.2.3