From 3c04e179b7dc86bb6af5d6b7aec63430885e1c6a Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:30:07 +0100
Subject: gnu: Add r-fastghquad.

* gnu/packages/cran.scm (r-fastghquad): New variable.
---
 gnu/packages/cran.scm | 22 ++++++++++++++++++++++
 1 file changed, 22 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 0943a8972b..c9d65a0efd 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -1344,6 +1344,28 @@ are used.  Fastmap avoids this memory leak issue by implementing the map using
 data structures in C++.")
     (license license:expat)))
 
+(define-public r-fastghquad
+  (package
+    (name "r-fastghquad")
+    (version "1.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "fastGHQuad" version))
+       (sha256
+        (base32
+         "1rjia8wggadr9xwxcmzmal0rc4g6pa3dr5888fbbnb6abl8b2lrj"))))
+    (properties `((upstream-name . "fastGHQuad")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-rcpp" ,r-rcpp)))
+    (home-page "https://github.com/awblocker/fastGHQuad")
+    (synopsis "Fast Rcpp implementation of Gauss-Hermite Quadrature")
+    (description
+     "This package implements numerically-stable Gauss-Hermite quadrature
+rules and utility functions for adaptive GH quadrature.")
+    (license license:expat)))
+
 ;; This package includes minified JavaScript files.  When upgrading please
 ;; check that there are no new minified JavaScript files.
 (define-public r-jquerylib
-- 
cgit v1.2.3


From bcdf0cf3a59287db5716359998fd124dcc1d83c2 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:30:45 +0100
Subject: gnu: Add r-rstpm2.

* gnu/packages/cran.scm (r-rstpm2): New variable.
---
 gnu/packages/cran.scm | 33 +++++++++++++++++++++++++++++++++
 1 file changed, 33 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index c9d65a0efd..e00b611a83 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -1366,6 +1366,39 @@ data structures in C++.")
 rules and utility functions for adaptive GH quadrature.")
     (license license:expat)))
 
+(define-public r-rstpm2
+  (package
+    (name "r-rstpm2")
+    (version "1.5.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "rstpm2" version))
+       (sha256
+        (base32
+         "0c6l3z250b2kn6mh2xyb0bd2y5nsbj11n9xfi51dac9s8xq3v7m4"))))
+    (properties `((upstream-name . "rstpm2")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-bbmle" ,r-bbmle)
+       ("r-bh" ,r-bh)
+       ("r-desolve" ,r-desolve)
+       ("r-fastghquad" ,r-fastghquad)
+       ("r-mgcv" ,r-mgcv)
+       ("r-rcpp" ,r-rcpp)
+       ("r-rcpparmadillo" ,r-rcpparmadillo)
+       ("r-survival" ,r-survival)))
+    (native-inputs
+     `(("gfortran" ,gfortran)))
+    (home-page "https://github.com/mclements/rstpm2")
+    (synopsis "Link-based survival models")
+    (description
+     "This package provides R implementations of @dfn{generalized survival
+models} (GSMs), smooth @dfn{accelerated failure time} (AFT) models and Markov
+multi-state models.")
+    ;; One of these licenses
+    (license (list license:gpl2 license:gpl3))))
+
 ;; This package includes minified JavaScript files.  When upgrading please
 ;; check that there are no new minified JavaScript files.
 (define-public r-jquerylib
-- 
cgit v1.2.3


From 91aa72bfe2b72c3fd3142caa879ad00510b13c19 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:31:03 +0100
Subject: gnu: Add r-palmerpenguins.

* gnu/packages/cran.scm (r-palmerpenguins): New variable.
---
 gnu/packages/cran.scm | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index e00b611a83..a5c8de4d64 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -2546,6 +2546,30 @@ inspired by Python's Literal String Interpolation (PEP-0498) and
 Docstrings (PEP-0257) and Julia's Triple-Quoted String Literals.")
     (license license:expat)))
 
+(define-public r-palmerpenguins
+  (package
+    (name "r-palmerpenguins")
+    (version "0.1.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "palmerpenguins" version))
+       (sha256
+        (base32
+         "0q1k3cdkliq7kwrg1n0vs9b6cjwyfarhlgdijhp9c6riy6y5ik7x"))))
+    (properties
+     `((upstream-name . "palmerpenguins")))
+    (build-system r-build-system)
+    (home-page "https://allisonhorst.github.io/palmerpenguins/")
+    (synopsis "Palmer Archipelago (Antarctica) penguin data")
+    (description
+     "This package includes size measurements, clutch observations, and blood
+isotope ratios for adult foraging Adélie, Chinstrap, and Gentoo penguins
+observed on islands in the Palmer Archipelago near Palmer Station, Antarctica.
+Data were collected and made available by Dr. Kristen Gorman and the Palmer
+Station Long Term Ecological Research (LTER) Program.")
+    (license license:cc0)))
+
 (define-public r-pastecs
   (package
    (name "r-pastecs")
-- 
cgit v1.2.3


From c341a4d02e9e63856bd763f8aba016767abb30ae Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:31:28 +0100
Subject: gnu: Add r-gridtext.

* gnu/packages/cran.scm (r-gridtext): New variable.
---
 gnu/packages/cran.scm | 31 +++++++++++++++++++++++++++++++
 1 file changed, 31 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index a5c8de4d64..bb5fea95b8 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -16747,6 +16747,37 @@ matrix and displays the significance level on the plot.  It also includes a
 function for computing a matrix of correlation p-values.")
     (license license:gpl2)))
 
+(define-public r-gridtext
+  (package
+    (name "r-gridtext")
+    (version "0.1.4")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "gridtext" version))
+       (sha256
+        (base32
+         "131kw7nkfwksviwfifd2kk7lyvhxzzzv1nnj8rahkr3dik3akk61"))))
+    (properties `((upstream-name . "gridtext")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-jpeg" ,r-jpeg)
+       ("r-markdown" ,r-markdown)
+       ("r-png" ,r-png)
+       ("r-rcpp" ,r-rcpp)
+       ("r-rcurl" ,r-rcurl)
+       ("r-rlang" ,r-rlang)
+       ("r-stringr" ,r-stringr)
+       ("r-xml2" ,r-xml2)))
+    (home-page "https://wilkelab.org/gridtext/")
+    (synopsis "Improved text rendering support for Grid graphics")
+    (description
+     "This package provides support for rendering of formatted text using Grid
+graphics.  Text can be formatted via a minimal subset of Markdown, HTML, and
+inline CSS directives, and it can be rendered both with and without word
+wrap.")
+    (license license:expat)))
+
 ;; This package includes minified JavaScript files.  When upgrading please
 ;; check that there are no new minified JavaScript files.
 (define-public r-flexdashboard
-- 
cgit v1.2.3


From 1bbf632574dc47db680e883beb0d6a997fc867e6 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:32:32 +0100
Subject: gnu: Add r-ggtext.

* gnu/packages/cran.scm (r-ggtext): New variable.
---
 gnu/packages/cran.scm | 27 +++++++++++++++++++++++++++
 1 file changed, 27 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index bb5fea95b8..232cea5cbc 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -16778,6 +16778,33 @@ inline CSS directives, and it can be rendered both with and without word
 wrap.")
     (license license:expat)))
 
+(define-public r-ggtext
+  (package
+    (name "r-ggtext")
+    (version "0.1.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "ggtext" version))
+       (sha256
+        (base32
+         "0n19dlcys8v7myfyckr6dnq0kx79k3sbh8nwx1jsx8pgzfbi8a2b"))))
+    (properties `((upstream-name . "ggtext")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-ggplot2" ,r-ggplot2)
+       ("r-gridtext" ,r-gridtext)
+       ("r-rlang" ,r-rlang)
+       ("r-scales" ,r-scales)))
+    (native-inputs `(("r-knitr" ,r-knitr)))
+    (home-page "https://wilkelab.org/ggtext/")
+    (synopsis "Improved text rendering support for ggplot2")
+    (description
+     "This package provides a ggplot2 extension that enables the rendering of
+complex formatted plot labels (titles, subtitles, facet labels, axis labels,
+etc.).  Text boxes with automatic word wrap are also supported.")
+    (license license:gpl2)))
+
 ;; This package includes minified JavaScript files.  When upgrading please
 ;; check that there are no new minified JavaScript files.
 (define-public r-flexdashboard
-- 
cgit v1.2.3


From 7fffee5e34c92359178da67206be348e42957e30 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:32:48 +0100
Subject: gnu: Add r-terra.

* gnu/packages/cran.scm (r-terra): New variable.
---
 gnu/packages/cran.scm | 35 +++++++++++++++++++++++++++++++++++
 1 file changed, 35 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 232cea5cbc..6b4370749c 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -18127,6 +18127,41 @@ stress majorization by Gansner et al. (2004)
 emphasize hidden group structures in networks or focus on specific nodes.")
     (license license:expat)))
 
+(define-public r-terra
+  (package
+    (name "r-terra")
+    (version "1.1-4")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "terra" version))
+       (sha256
+        (base32
+         "1vsh55sq56shc8s2vmkl27yvrdbrbn3l6jrigqf2hmvppkb2jsbg"))))
+    (properties `((upstream-name . "terra")))
+    (build-system r-build-system)
+    (inputs
+     `(("gdal" ,gdal)
+       ("geos" ,geos)
+       ("proj" ,proj)
+       ("sqlite" ,sqlite) ; needed for proj
+       ("zlib" ,zlib)))
+    (propagated-inputs
+     `(("r-raster" ,r-raster)
+       ("r-rcpp" ,r-rcpp)))
+    (native-inputs
+     `(("pkg-config" ,pkg-config)))
+    (home-page "https://rspatial.org/terra")
+    (synopsis "Spatial data analysis")
+    (description
+     "This package provides methods for spatial data analysis, especially
+raster data.  The included methods allow for low-level data manipulation as
+well as high-level global, local, zonal, and focal computation.  The predict
+and interpolate methods facilitate the use of regression type (interpolation,
+machine learning) models for spatial prediction.  Processing of very large
+files is supported.")
+    (license license:gpl3+)))
+
 (define-public r-tidygraph
   (package
     (name "r-tidygraph")
-- 
cgit v1.2.3


From 4be2e0f309673cc83046573659c3823291399234 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:37:48 +0100
Subject: gnu: r-cachem: Update to 1.0.4.

* gnu/packages/cran.scm (r-cachem): Update to 1.0.4.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 6b4370749c..fd101b6895 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -129,14 +129,14 @@ files and provide more explicit control over line endings.")
 (define-public r-cachem
   (package
     (name "r-cachem")
-    (version "1.0.3")
+    (version "1.0.4")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "cachem" version))
        (sha256
         (base32
-         "0y3jb96lyn3vc3nq8gs9x669w3xp69vdg5xc69qy0l356r39gp3r"))))
+         "1b1gk837rk9kbfq385ybrrk12ckxwvhjvf0z9635l3vw49wal4mh"))))
     (properties `((upstream-name . "cachem")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From 260259f5ef0baa37cf9180cfc184e1410a07828a Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:37:52 +0100
Subject: gnu: r-waldo: Update to 0.2.5.

* gnu/packages/cran.scm (r-waldo): Update to 0.2.5.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index fd101b6895..c5da1f1429 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -175,14 +175,14 @@ visualization of their differences.")
 (define-public r-waldo
   (package
     (name "r-waldo")
-    (version "0.2.3")
+    (version "0.2.5")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "waldo" version))
        (sha256
         (base32
-         "0lsw8p4wiggqm9fvh5vgmf0ms0npcg3hcwyzlg5ahv5yx4pv5fhz"))))
+         "09jhwpgd6hg4qyip4r7wzpjz0jr139fyspd5ncriqimp522snqbr"))))
     (properties `((upstream-name . "waldo")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From fa00e35b9ed1dac48258f24bc86d22cf76368760 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:37:55 +0100
Subject: gnu: r-rticles: Update to 0.19.

* gnu/packages/cran.scm (r-rticles): Update to 0.19.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index c5da1f1429..4c5ea04b25 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -205,14 +205,14 @@ easier.")
 (define-public r-rticles
   (package
     (name "r-rticles")
-    (version "0.18")
+    (version "0.19")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "rticles" version))
        (sha256
         (base32
-         "1srczjy9dqw06glrv95798xsg462kfbbwm3yk1fv1zhpz9jhakwv"))))
+         "1zcj5y54z1max1df9j2iclm6zlcic4wj684y18wcnmmdwfs51818"))))
     (properties `((upstream-name . "rticles")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From f0f2e2cbda1d0b8280c3e9d76ffef8dbc090e592 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:37:58 +0100
Subject: gnu: r-partykit: Update to 1.2-13.

* gnu/packages/cran.scm (r-partykit): Update to 1.2-13.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 4c5ea04b25..c786fff38f 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -2594,13 +2594,13 @@ initiative to bring PASSTEC 2000 functionalities to R.")
 (define-public r-partykit
   (package
    (name "r-partykit")
-   (version "1.2-12")
+   (version "1.2-13")
    (source (origin
              (method url-fetch)
              (uri (cran-uri "partykit" version))
              (sha256
               (base32
-               "15d5g89winndv8cy8jjjxy87fliafp5zyb8b58czrijwcmagg50l"))))
+               "15bfhqvx2y4vclnc3sw4v7ggs70pk57b3qk9aqjfvdrx444d2gd4"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-formula" ,r-formula)
-- 
cgit v1.2.3


From 601a112bb21f52f1ecdded107bfba2892eb1873d Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:38:01 +0100
Subject: gnu: r-ps: Update to 1.6.0.

* gnu/packages/cran.scm (r-ps): Update to 1.6.0.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index c786fff38f..ee99374735 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -2674,13 +2674,13 @@ print, summary, plot, update, etc.
 (define-public r-ps
   (package
     (name "r-ps")
-    (version "1.5.0")
+    (version "1.6.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "ps" version))
        (sha256
-        (base32 "15pyz94b0z6ibrjp25np5nd4z20whnnr35wsavdgwmsmynba2qbl"))))
+        (base32 "0cdzjqgap108whhsilxllg12m2d05pgksryhrz5bq608bvf7vbc9"))))
     (build-system r-build-system)
     (home-page "https://ps.r-lib.org")
     (synopsis "List, query, and manipulate system processes")
-- 
cgit v1.2.3


From 84e39b3d9979126323e5acb9a23852d1ad27baab Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:38:04 +0100
Subject: gnu: r-pkgload: Update to 1.2.0.

* gnu/packages/cran.scm (r-pkgload): Update to 1.2.0.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index ee99374735..afc3dd5678 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -2720,14 +2720,14 @@ is configured appropriately so R can use them.")
 (define-public r-pkgload
   (package
     (name "r-pkgload")
-    (version "1.1.0")
+    (version "1.2.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "pkgload" version))
        (sha256
         (base32
-         "03bv8xq4s6s7m34y1kjs99jzlb95vwrfi76mbnhmzcx2pc6ld78q"))))
+         "185xr79z2vncq62bni7x4qv3p7dxvnfsbdnnglma0a196hz6pj7v"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-cli" ,r-cli)
-- 
cgit v1.2.3


From 7ff93d34830ea4d97694b2954db0bf180eea790a Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:38:07 +0100
Subject: gnu: r-ffbase: Update to 0.13.3.

* gnu/packages/cran.scm (r-ffbase): Update to 0.13.3.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index afc3dd5678..0675a3660c 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -3126,14 +3126,14 @@ in main memory.")
 (define-public r-ffbase
   (package
     (name "r-ffbase")
-    (version "0.13.1")
+    (version "0.13.3")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "ffbase" version))
        (sha256
         (base32
-         "0knl0vnh8w4q3ry24gp4fd55ipnaj9hb1rwm31fs119kgmh3gd8x"))))
+         "1dp6lblfq2j7r1b4b8ls47jlx8j27n88d5vp8w116lb8pa01zxmk"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-bit" ,r-bit)
-- 
cgit v1.2.3


From adbd713085e71ee6356445689470e7a0727ce99f Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:38:11 +0100
Subject: gnu: r-ggally: Update to 2.1.1.

* gnu/packages/cran.scm (r-ggally): Update to 2.1.1.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 0675a3660c..77e41babd6 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -3246,14 +3246,14 @@ package also provides a C++ API, that works with or without Rcpp.")
 (define-public r-ggally
   (package
     (name "r-ggally")
-    (version "2.1.0")
+    (version "2.1.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "GGally" version))
        (sha256
         (base32
-         "0lvcvlc8p2cii7rqx7m81f7cv3kk9mlf7cbbgv7l75g7ljw8dyvz"))))
+         "0lly659kd43cnz1bmmzqj6dbf4v0nm8dhj8xq2wlv9qbnfhq5r9p"))))
     (properties `((upstream-name . "GGally")))
     (build-system r-build-system)
     (inputs
-- 
cgit v1.2.3


From 4fcbe65d61299031059a2909a7a59a155e1066f0 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:38:14 +0100
Subject: gnu: r-proxy: Update to 0.4-25.

* gnu/packages/cran.scm (r-proxy): Update to 0.4-25.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 77e41babd6..0aa98cadf0 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -3285,14 +3285,14 @@ plot networks.")
 (define-public r-proxy
   (package
     (name "r-proxy")
-    (version "0.4-24")
+    (version "0.4-25")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "proxy" version))
        (sha256
         (base32
-         "0z4wdnpv5x135nssxnmkkba7fivd5xgbpaabqjkl2na76vq9pzwc"))))
+         "1m893djrv6ckadmlx9n5bxfp0ycdh2w63sy6yxfyj1migvc7072f"))))
     (build-system r-build-system)
     (home-page "https://cran.r-project.org/web/packages/proxy")
     (synopsis "Distance and similarity measures")
-- 
cgit v1.2.3


From 37097b923c6cb7c768105b561cbd13a624569079 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:38:17 +0100
Subject: gnu: r-rmpi: Update to 0.6-9.1.

* gnu/packages/cran.scm (r-rmpi): Update to 0.6-9.1.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 0aa98cadf0..c62b2cf042 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -3368,13 +3368,13 @@ matrices.")
 (define-public r-rmpi
   (package
     (name "r-rmpi")
-    (version "0.6-9")
+    (version "0.6-9.1")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "Rmpi" version))
               (sha256
                (base32
-                "1rhycla98hxgnnxlxxldr1x51djak7c2jjvlrv3jcsvgwp1ymqdj"))))
+                "1j8akqjan59yzwx2s1zxc214qyd323fd2i2dhgq0n11mb6ajmq4r"))))
     (properties `((upstream-name . "Rmpi")))
     (build-system r-build-system)
     (arguments
-- 
cgit v1.2.3


From b3700e61d4e30a938f8107e1f93969d97a27a861 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:38:21 +0100
Subject: gnu: r-energy: Update to 1.7-8.

* gnu/packages/cran.scm (r-energy): Update to 1.7-8.
[propagated-inputs]: Add r-gsl.
---
 gnu/packages/cran.scm | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index c62b2cf042..16e0c71e30 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -3750,17 +3750,18 @@ data).  Weighted versions of MLE, MME and QME are available.")
 (define-public r-energy
   (package
     (name "r-energy")
-    (version "1.7-7")
+    (version "1.7-8")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "energy" version))
        (sha256
         (base32
-         "13wnx5nwk7nsv7vf5sxhz4y0rxrnzm76ldgywk1bxrz67srqzf37"))))
+         "12a7gy681aq3l55iys044cs6sn1s2l5qihghpdl01cvv0ggfh26y"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-boot" ,r-boot)
+       ("r-gsl" ,r-gsl)
        ("r-rcpp" ,r-rcpp)))
     (home-page "https://cran.r-project.org/web/packages/energy")
     (synopsis "Multivariate inference via the energy of data")
-- 
cgit v1.2.3


From 6c7d9efdd87ac8bd71364cbb00b8514d44d60fd3 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:38:24 +0100
Subject: gnu: r-ipred: Update to 0.9-10.

* gnu/packages/cran.scm (r-ipred): Update to 0.9-10.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 16e0c71e30..58e397df3c 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -4214,14 +4214,14 @@ provided.")
 (define-public r-ipred
   (package
     (name "r-ipred")
-    (version "0.9-9")
+    (version "0.9-10")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "ipred" version))
        (sha256
         (base32
-         "0vs1hqfx7yd0xdbmfsf2gim7spkni0845cj6gswn0nhdfdq7ma0d"))))
+         "0p9cd2v47h71jbz8q0z6xykkaqpcp0mkpsfmd2bn961n1hfgpa63"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-class" ,r-class)
-- 
cgit v1.2.3


From 0496ce3c4424976e55597d464319b05868c9a6d6 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:38:27 +0100
Subject: gnu: r-broom: Update to 0.7.5.

* gnu/packages/cran.scm (r-broom): Update to 0.7.5.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 58e397df3c..c387dadc25 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -4294,14 +4294,14 @@ by base R methods related to model fitting.")
 (define-public r-broom
   (package
     (name "r-broom")
-    (version "0.7.4")
+    (version "0.7.5")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "broom" version))
        (sha256
         (base32
-         "1zwdgv59a5c4mdcfn3anvsf83ymi11ij6k9nssw3aqzirp6fwg3w"))))
+         "1qjyl5b100bsakm48w1vi3819lkpys7vb86n1sv9h4y2wr1c4jmw"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-backports" ,r-backports)
-- 
cgit v1.2.3


From 5136cc1306596a8c3eec4b440263e632301cef02 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:38:31 +0100
Subject: gnu: r-cli: Update to 2.3.1.

* gnu/packages/cran.scm (r-cli): Update to 2.3.1.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index c387dadc25..70571e0f7f 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -5067,14 +5067,14 @@ plots in @code{ggplot2}.")
 (define-public r-cli
   (package
     (name "r-cli")
-    (version "2.3.0")
+    (version "2.3.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "cli" version))
        (sha256
         (base32
-         "128bx3bds0dnkixc4frbky11rz1ilnvdfzz9mggajj690i11b62q"))))
+         "1jh64ixn6mg2ap1sx4azrxkjnlsyjbfxyc9zjkx8m9dlakgf4v2i"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-assertthat" ,r-assertthat)
-- 
cgit v1.2.3


From 6fe7e138b95720d1f20de3f39681b0233499da8d Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:38:34 +0100
Subject: gnu: r-argparser: Update to 0.7.1.

* gnu/packages/cran.scm (r-argparser): Update to 0.7.1.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 70571e0f7f..e514adf42e 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -5089,14 +5089,14 @@ rules, boxes, trees, and Unicode symbols with ASCII alternatives.")
 (define-public r-argparser
   (package
     (name "r-argparser")
-    (version "0.6")
+    (version "0.7.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "argparser" version))
        (sha256
         (base32
-         "1pxiz9jlhlnpzqn1lz349r07i7glw708w202x6dlnxp112fg7k4x"))))
+         "0xcl0ivsbc4iw8s7027q4cx68j6s5lihbby0xa9pmlv4wjmcvdr6"))))
     (build-system r-build-system)
     (home-page "https://bitbucket.org/djhshih/argparser")
     (synopsis "Command-line argument parser")
-- 
cgit v1.2.3


From bd1ff10ea0a70b1530c46d63bb10e71c8316bfd1 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:38:38 +0100
Subject: gnu: r-pillar: Update to 1.5.1.

* gnu/packages/cran.scm (r-pillar): Update to 1.5.1.
[native-inputs]: Add r-knitr.
---
 gnu/packages/cran.scm | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index e514adf42e..ff5347de48 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -5379,14 +5379,14 @@ to variables on the left-hand side of the assignment.")
 (define-public r-pillar
   (package
     (name "r-pillar")
-    (version "1.4.7")
+    (version "1.5.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "pillar" version))
        (sha256
         (base32
-         "167ji21fx04s2niw5pjq9vzxgagxzsg3gimh8dzr2kl5ljrb5vfd"))))
+         "0wp68cg95895aybi7yjqy0sidvc68lmfqndinpd63dysci9x3r8c"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-cli" ,r-cli)
@@ -5397,6 +5397,8 @@ to variables on the left-hand side of the assignment.")
        ("r-rlang" ,r-rlang)
        ("r-utf8" ,r-utf8)
        ("r-vctrs" ,r-vctrs)))
+    (native-inputs
+     `(("r-knitr" ,r-knitr)))
     (home-page "https://github.com/r-lib/pillar")
     (synopsis "Coloured formatting for columns")
     (description
-- 
cgit v1.2.3


From 17747033833c17fd1911e3ef4508e5495bf592da Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:38:41 +0100
Subject: gnu: r-tinytex: Update to 0.30.

* gnu/packages/cran.scm (r-tinytex): Update to 0.30.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index ff5347de48..f4723fd00e 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -5429,14 +5429,14 @@ terminals.")
 (define-public r-tinytex
   (package
     (name "r-tinytex")
-    (version "0.29")
+    (version "0.30")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "tinytex" version))
        (sha256
         (base32
-         "0my1412vn5zri01w2myzn268lfwinbhfgdj4bbcib3s48i9djw0n"))))
+         "0dk6mpszwh1m65b0wfwjlcvpzywmasf6p31niqiq53wnd92my0gw"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-xfun" ,r-xfun)))
-- 
cgit v1.2.3


From 0505facdd550522276f69810701cd93cb8212e4d Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:38:45 +0100
Subject: gnu: r-rio: Update to 0.5.26.

* gnu/packages/cran.scm (r-rio): Update to 0.5.26.
[native-inputs]: Add r-knitr.
---
 gnu/packages/cran.scm | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index f4723fd00e..1fb64241a3 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -6868,14 +6868,14 @@ dependency on Java.")
 (define-public r-rio
   (package
     (name "r-rio")
-    (version "0.5.16")
+    (version "0.5.26")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "rio" version))
        (sha256
         (base32
-         "0rfl56fdawlhc98451a9lcb6a6m56kw0i7dvd5hx58z025d8vsyk"))))
+         "1k6zxjb2bb0z6rv7zmkbaz85cbvs84mj602ikkwk60alh8kpdw2d"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-curl" ,r-curl)
@@ -6885,6 +6885,8 @@ dependency on Java.")
        ("r-openxlsx" ,r-openxlsx)
        ("r-readxl" ,r-readxl)
        ("r-tibble" ,r-tibble)))
+    (native-inputs
+     `(("r-knitr" ,r-knitr)))
     (home-page "https://github.com/leeper/rio")
     (synopsis "Swiss-army knife for data I/O")
     (description
-- 
cgit v1.2.3


From 9d9d11b5d3f4dbf43ec51d137f5d6232e77aad2f Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:38:49 +0100
Subject: gnu: r-promises: Update to 1.2.0.1.

* gnu/packages/cran.scm (r-promises): Update to 1.2.0.1.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 1fb64241a3..3e0a608ba4 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -6957,14 +6957,14 @@ time after the current time, after the R execution stack has emptied.")
 (define-public r-promises
   (package
     (name "r-promises")
-    (version "1.1.1")
+    (version "1.2.0.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "promises" version))
        (sha256
         (base32
-         "002qkhcn3ri6a3w5fizjvdvrjgvqiw8i7rl9jglcnqik5kmwc61p"))))
+         "1dy4cbqw17awh4q8m7cy3anaj0n9iynabfzflb1g94cyj0bq4fld"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-later" ,r-later)
-- 
cgit v1.2.3


From b592c4dbe6e95c4c9c6a56c0aa67e341c0d6b97a Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:38:53 +0100
Subject: gnu: r-rastervis: Update to 0.50.

* gnu/packages/cran.scm (r-rastervis): Update to 0.50.
[propagated-inputs]: Add r-terra.
---
 gnu/packages/cran.scm | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 3e0a608ba4..96055c68b2 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -7248,14 +7248,14 @@ Python's @url{https://github.com/ActiveState/appdirs,Appdirs} to R.")
 (define-public r-rastervis
   (package
     (name "r-rastervis")
-    (version "0.49")
+    (version "0.50")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "rasterVis" version))
        (sha256
         (base32
-         "0d12h7xqcwy1wps6yya9nzfppbnsxpmbkqmy3a8pvxpg81l632kk"))))
+         "0m7fjd53apxim0d0rjnyzc28vmfcg4spcrn0zbnk8llillxji1hi"))))
     (properties `((upstream-name . "rasterVis")))
     (build-system r-build-system)
     (propagated-inputs
@@ -7265,6 +7265,7 @@ Python's @url{https://github.com/ActiveState/appdirs,Appdirs} to R.")
        ("r-raster" ,r-raster)
        ("r-rcolorbrewer" ,r-rcolorbrewer)
        ("r-sp" ,r-sp)
+       ("r-terra" ,r-terra)
        ("r-viridislite" ,r-viridislite)
        ("r-zoo" ,r-zoo)))
     (home-page "https://oscarperpinan.github.io/rastervis/")
-- 
cgit v1.2.3


From 2c49fe40630721735e4e7ad088502fbf264416b9 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:38:56 +0100
Subject: gnu: r-renv: Update to 0.13.0.

* gnu/packages/cran.scm (r-renv): Update to 0.13.0.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 96055c68b2..5704a2d5f4 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -7307,14 +7307,14 @@ those searches and pull data into their R sessions.")
 (define-public r-renv
   (package
     (name "r-renv")
-    (version "0.12.5")
+    (version "0.13.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "renv" version))
        (sha256
         (base32
-         "0wfq1z5glng6jrfxj25mjhp129z6468gaszr9ggks5gp8lrwszzh"))))
+         "16n2dz9jibc03f7q1wrzxss6l5jmaks7m2lnli9dz9anvcmxbdia"))))
     (properties `((upstream-name . "renv")))
     (build-system r-build-system)
     (native-inputs
-- 
cgit v1.2.3


From b6d9965d41b239573b3d6a47c92a3a8899750e22 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:38:59 +0100
Subject: gnu: r-ggsignif: Update to 0.6.1.

* gnu/packages/cran.scm (r-ggsignif): Update to 0.6.1.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 5704a2d5f4..4f9b6406e5 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -7497,14 +7497,14 @@ movies, and TV shows.")
 (define-public r-ggsignif
   (package
     (name "r-ggsignif")
-    (version "0.6.0")
+    (version "0.6.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "ggsignif" version))
        (sha256
         (base32
-         "17j9hg967k1wp9xw3x84mqss58jkb8pvlrnlchz4i1hklgykxqbg"))))
+         "0rjy9wqsq67jjm1jz3j7hm599x0rshrrhw2w01iaqb9kf506hvjh"))))
     (build-system r-build-system)
     (native-inputs
      `(("r-knitr" ,r-knitr)))
-- 
cgit v1.2.3


From fdf375346adeaab801709828f5f473c9690ca01c Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:39:02 +0100
Subject: gnu: r-rstatix: Update to 0.7.0.

* gnu/packages/cran.scm (r-rstatix): Update to 0.7.0.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 4f9b6406e5..dc2de4b5a2 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -7524,14 +7524,14 @@ and adds the annotation to the plot.")
 (define-public r-rstatix
   (package
     (name "r-rstatix")
-    (version "0.6.0")
+    (version "0.7.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "rstatix" version))
        (sha256
         (base32
-         "0nwwvxwr4z3j4n9z8cnvwghppc836g47n0ia98chk272qwh8xcpb"))))
+         "0330y8iziffqg8j9j5h9zv4qcdyf8ybhmzxrr9fzq9nc6bf1gbm5"))))
     (properties `((upstream-name . "rstatix")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From 0281b306cafcf9eb77891a61ba1f097f99dfd778 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:39:07 +0100
Subject: gnu: r-rdpack: Update to 2.1.1.

* gnu/packages/cran.scm (r-rdpack): Update to 2.1.1.
[propagated-inputs]: Remove r-gbrd.
---
 gnu/packages/cran.scm | 7 +++----
 1 file changed, 3 insertions(+), 4 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index dc2de4b5a2..33670bf5a0 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -7900,19 +7900,18 @@ implemented in bibutils.")
 (define-public r-rdpack
   (package
     (name "r-rdpack")
-    (version "2.1")
+    (version "2.1.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "Rdpack" version))
        (sha256
         (base32
-         "1kmz0kq2z1xl55w22paz98x9jpss06abvicmkslv4zq77kz99q16"))))
+         "11psw5yiamq0g7jc6fqn2wis565i60qgda4a5d09qi8fyzd6mnfb"))))
     (properties `((upstream-name . "Rdpack")))
     (build-system r-build-system)
     (propagated-inputs
-     `(("r-rbibutils" ,r-rbibutils)
-       ("r-gbrd" ,r-gbrd)))
+     `(("r-rbibutils" ,r-rbibutils)))
     (home-page "https://github.com/GeoBosh/Rdpack")
     (synopsis "Update and manipulate Rd documentation objects")
     (description
-- 
cgit v1.2.3


From ad037d6ecb92628e35de7d0655bf790f927f67ee Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:39:10 +0100
Subject: gnu: r-officer: Update to 0.3.17.

* gnu/packages/cran.scm (r-officer): Update to 0.3.17.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 33670bf5a0..2ce7ba04b3 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -7926,14 +7926,14 @@ references and Rd files.")
 (define-public r-officer
   (package
     (name "r-officer")
-    (version "0.3.16")
+    (version "0.3.17")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "officer" version))
        (sha256
         (base32
-         "1ls5kp70jfxrzxxb3xrg8sn2fyk6qd7rmx23n5jxi7z7850avjrj"))))
+         "1apg0dh1zfhrqcbbmm8318l40gyjbqc2l9sdvwxx7qi8mzc1mqvw"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-r6" ,r-r6)
-- 
cgit v1.2.3


From 111400674ff4699e4ddd8ce03d3d4bff0650885e Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:39:13 +0100
Subject: gnu: r-insight: Update to 0.13.1.

* gnu/packages/cran.scm (r-insight): Update to 0.13.1.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 2ce7ba04b3..70b3ff1106 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -8187,14 +8187,14 @@ other add-on packages.")
 (define-public r-insight
   (package
     (name "r-insight")
-    (version "0.12.0")
+    (version "0.13.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "insight" version))
        (sha256
         (base32
-         "0gkvcw9d729ql1gfrpxzgrag4xafd0hchrdww215qz11ma1rzy7s"))))
+         "1la4yxzfl9fnknamnaziil6gvpdzl78z16lfzis9jgzg8r9q0y5l"))))
     (build-system r-build-system)
     (native-inputs
      `(("r-knitr" ,r-knitr)))
-- 
cgit v1.2.3


From c1037edc89b2ca4e8c9aee4f410aa148cff20a99 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:39:16 +0100
Subject: gnu: r-deriv: Update to 4.1.3.

* gnu/packages/cran.scm (r-deriv): Update to 4.1.3.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 70b3ff1106..1e3716bb37 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -8549,14 +8549,14 @@ Group (Non-)Overlap considerations.")
 (define-public r-deriv
   (package
     (name "r-deriv")
-    (version "4.1.2")
+    (version "4.1.3")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "Deriv" version))
        (sha256
         (base32
-         "1j9sh1w9lsnnhlh59g4ghykyfx46rxh380s8imvm7pzna7rw7c64"))))
+         "130g3mv0z9sqs6y23a0a94512iiw05yr6fp378vhdxxbignzbnyv"))))
     (properties `((upstream-name . "Deriv")))
     (build-system r-build-system)
     (home-page "https://cran.r-project.org/web/packages/Deriv")
-- 
cgit v1.2.3


From 2dae640d8ab417c71dfedc7c5ac1c013d1c057b1 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:39:19 +0100
Subject: gnu: r-doby: Update to 4.6.9.

* gnu/packages/cran.scm (r-doby): Update to 4.6.9.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 1e3716bb37..f390c0814b 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -8571,14 +8571,14 @@ the work.")
 (define-public r-doby
   (package
     (name "r-doby")
-    (version "4.6.8")
+    (version "4.6.9")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "doBy" version))
        (sha256
         (base32
-         "0r97kwsj6g87m7shgnjc5c9y71jkhiq4xd9q0s2bxl0vl92qqwvg"))))
+         "02f545md5yhbpp3wb3q2c8zabqwgf02555r5c6g7znab5zjbyr00"))))
     (properties `((upstream-name . "doBy")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From 4c113c54f11a44a3f81b46bc4ced480a4620a744 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:39:25 +0100
Subject: gnu: r-labelled: Update to 2.8.0.

* gnu/packages/cran.scm (r-labelled): Update to 2.8.0.
[propagated-inputs]: Remove r-pillar; add r-stringr.
---
 gnu/packages/cran.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index f390c0814b..61102aca55 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -9005,22 +9005,22 @@ and coverage methods to tune the choice of threshold.")
 (define-public r-labelled
   (package
     (name "r-labelled")
-    (version "2.7.0")
+    (version "2.8.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "labelled" version))
        (sha256
         (base32
-         "1nsb0mh0jg7gggc41b6v55nmfq07g0qn9fy55x4jws5dscs6pdmi"))))
+         "0fs8fhmk9j2nv2j87mpkmm0clz34f8kybnzn6pzqpcbwk0i2pcwg"))))
     (properties `((upstream-name . "labelled")))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-dplyr" ,r-dplyr)
        ("r-haven" ,r-haven)
        ("r-lifecycle" ,r-lifecycle)
-       ("r-pillar" ,r-pillar)
        ("r-rlang" ,r-rlang)
+       ("r-stringr" ,r-stringr)
        ("r-tidyr" ,r-tidyr)
        ("r-vctrs" ,r-vctrs)))
     (native-inputs
-- 
cgit v1.2.3


From 70d490eb7381ec181820b635b316a76e3a55a997 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:39:28 +0100
Subject: gnu: r-gert: Update to 1.2.0.

* gnu/packages/cran.scm (r-gert): Update to 1.2.0.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 61102aca55..4e00be66e5 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -10674,14 +10674,14 @@ user credentials.")
 (define-public r-gert
   (package
     (name "r-gert")
-    (version "1.1.0")
+    (version "1.2.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "gert" version))
        (sha256
         (base32
-         "09har6mj7qy813s6dxyzfzmjwg60m8c01yx3q6lfsnvwqzxlqxv8"))))
+         "0ag2ia6cfb5drf3517lg5nhik1w0nv09a75wdy5jdciws1qra3d6"))))
     (properties `((upstream-name . "gert")))
     (build-system r-build-system)
     (inputs
-- 
cgit v1.2.3


From 7db329a300dac9ec40646dbd5c30c31eb2f0632d Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:39:31 +0100
Subject: gnu: r-mvabund: Update to 4.1.9.

* gnu/packages/cran.scm (r-mvabund): Update to 4.1.9.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 4e00be66e5..fed0f32df5 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -11052,14 +11052,14 @@ the interfaces between R and C++.")
 (define-public r-mvabund
   (package
     (name "r-mvabund")
-    (version "4.1.6")
+    (version "4.1.9")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "mvabund" version))
        (sha256
         (base32
-         "0aisvax9d7bk6aykrcdcn1ji618r520mcrkr1i3jnck1qs31z41f"))))
+         "19kyg0agjk7gxipa5kmklz4cqh97xrdbibmmy1g99r1gp3s9ml30"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-mass" ,r-mass)
-- 
cgit v1.2.3


From ed7f3e3c2f4f04068a837767486c3ba8224505d5 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:39:34 +0100
Subject: gnu: r-rcppparallel: Update to 5.0.3.

* gnu/packages/cran.scm (r-rcppparallel): Update to 5.0.3.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index fed0f32df5..98a13020c0 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -11241,14 +11241,14 @@ package provides a minimal R interface by relying on the Rcpp package.")
 (define-public r-rcppparallel
   (package
     (name "r-rcppparallel")
-    (version "5.0.2")
+    (version "5.0.3")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "RcppParallel" version))
        (sha256
         (base32
-         "10bg4fw38m64dhy543rwq2nnjjc9y24iggk343xslrb3ij8018lc"))))
+         "0ihcirny4al2ydymxhdfacwmybmrgrz5nm0lbf49gk2zy8w124ki"))))
     (properties `((upstream-name . "RcppParallel")))
     (build-system r-build-system)
     (home-page "https://rcppcore.github.io/RcppParallel/")
-- 
cgit v1.2.3


From 1b9009ce98fa373ade5952b4abc38c490a9a9625 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:39:37 +0100
Subject: gnu: r-rgl: Update to 0.105.22.

* gnu/packages/cran.scm (r-rgl): Update to 0.105.22.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 98a13020c0..99b947540f 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -11310,14 +11310,14 @@ Bioconductor packages.")
 (define-public r-rgl
   (package
     (name "r-rgl")
-    (version "0.104.16")
+    (version "0.105.22")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "rgl" version))
        (sha256
         (base32
-         "169a8riiam8445nl7rcwn0x92dlwyzh5xldvap6dcxjyjqmjwbdq"))))
+         "1y69phym8pkdh1k808y3rp1030xmhjpc8vig9035v9n1r7v7a1kz"))))
     (build-system r-build-system)
     (native-inputs
      `(("pkg-config" ,pkg-config)
-- 
cgit v1.2.3


From 1ef3abaff3f78b3c7e406b9a5e45f4f6e4a9ace0 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:39:40 +0100
Subject: gnu: r-activity: Update to 1.3.1.

* gnu/packages/cran.scm (r-activity): Update to 1.3.1.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 99b947540f..b68e52f02f 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -11505,14 +11505,14 @@ Scientific.")
 (define-public r-activity
   (package
     (name "r-activity")
-    (version "1.3")
+    (version "1.3.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "activity" version))
        (sha256
         (base32
-         "12imqj366dp6pam5gap6ji56p5wf1073xz5g4iikfxf5l8snxw92"))))
+         "1wn2a0hx7wfr2jyj1b772w5fgl6bcqkkw8cybais2s1wyjx8kjr5"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-circular" ,r-circular)
-- 
cgit v1.2.3


From 7fab62cecb59010980b62f867ed777b5b6d1729c Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:39:44 +0100
Subject: gnu: r-ouch: Update to 2.15-1.

* gnu/packages/cran.scm (r-ouch): Update to 2.15-1.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index b68e52f02f..b8304c064f 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -11531,14 +11531,14 @@ circular variables).")
 (define-public r-ouch
   (package
     (name "r-ouch")
-    (version "2.14-1")
+    (version "2.15-1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "ouch" version))
        (sha256
         (base32
-         "0ddf9bw5lhj8vb0ja78jf99i0smq4rgmm842k4a4ygap41vdyn2b"))))
+         "0myddn3b28pswyk42kvwhyvkj30q41f677vpxclxacdfkhgvrj6q"))))
     (build-system r-build-system)
     (propagated-inputs `(("r-subplex" ,r-subplex)))
     (home-page "https://kingaa.github.io/ouch/")
-- 
cgit v1.2.3


From cf1ef75cc4542eed74db8d22877e412f9302e8db Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:39:48 +0100
Subject: gnu: r-fftwtools: Update to 0.9-11.

* gnu/packages/cran.scm (r-fftwtools): Update to 0.9-11.
[native-inputs]: Add pkg-config.
---
 gnu/packages/cran.scm | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index b8304c064f..607ea4a7c6 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -11689,16 +11689,18 @@ components).")
 (define-public r-fftwtools
   (package
     (name "r-fftwtools")
-    (version "0.9-9")
+    (version "0.9-11")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "fftwtools" version))
        (sha256
         (base32
-         "0h8lyl2i6zq16ir7xnfj9dhyivxvwikm8lml19s8s8jx95z3n9x9"))))
+         "0zrchp4l0jdbir2gibjf00x225y9giqk80zvqmr2yyvc12lwkw7i"))))
     (build-system r-build-system)
     (inputs `(("fftw" ,fftw)))
+    (native-inputs
+     `(("pkg-config" ,pkg-config)))
     (home-page "https://github.com/krahim/fftwtools")
     (synopsis "Wrapper for FFTW3")
     (description
-- 
cgit v1.2.3


From 1443bb0f1991c9c07f2187d15803a2e5be167f5b Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:39:51 +0100
Subject: gnu: r-tiff: Update to 0.1-7.

* gnu/packages/cran.scm (r-tiff): Update to 0.1-7.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 607ea4a7c6..b6fb030c9b 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -11716,14 +11716,14 @@ redundant complex conjugate when the input is real data.")
 (define-public r-tiff
   (package
     (name "r-tiff")
-    (version "0.1-6")
+    (version "0.1-7")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "tiff" version))
        (sha256
         (base32
-         "1yy4im2lwzhjnnkfwxgkknsajvm83pcwaf370pkgfva2db0xjfv2"))))
+         "101n6x70fr1dhcwx53g3s8q1j4wh93y0388v1s1316f8558rxqxh"))))
     (build-system r-build-system)
     (inputs
      `(("libtiff" ,libtiff)
-- 
cgit v1.2.3


From b63f13b59f36f8155644122e0209c40ddd75568e Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:39:54 +0100
Subject: gnu: r-gargle: Update to 1.0.0.

* gnu/packages/cran.scm (r-gargle): Update to 1.0.0.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index b6fb030c9b..ddd6e74a07 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -12630,14 +12630,14 @@ and manipulating sets of ontological terms.")
 (define-public r-gargle
   (package
     (name "r-gargle")
-    (version "0.5.0")
+    (version "1.0.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "gargle" version))
        (sha256
         (base32
-         "1fykmiv3x8c9ai31r9wr7qcca51h6kqn9cgwbxvxfj15fhwskh4n"))))
+         "0hsqn4hf935wn6vk2pwym7la4sdvy271y4cashp38pg4hkpg9zph"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-fs" ,r-fs)
-- 
cgit v1.2.3


From 690940cc53a27117e7c8e8fec486f24bae2a9f0b Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:39:57 +0100
Subject: gnu: r-dotcall64: Update to 1.0-1.

* gnu/packages/cran.scm (r-dotcall64): Update to 1.0-1.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index ddd6e74a07..73719042b8 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -13164,14 +13164,14 @@ to throw errors if they aren't in the right form.")
 (define-public r-dotcall64
   (package
     (name "r-dotcall64")
-    (version "1.0-0")
+    (version "1.0-1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "dotCall64" version))
        (sha256
         (base32
-         "1b8p7m3w0m7bp977c6jz74xkd611cxg11j49yza59k5fp338scb9"))))
+         "1im5k8jbviwj2i42mq1kmjskh80isa7jr9w8i0fknidrzzy2h2zi"))))
     (properties `((upstream-name . "dotCall64")))
     (build-system r-build-system)
     (native-inputs `(("gfortran" ,gfortran)))
-- 
cgit v1.2.3


From 089a3a7fcdc1d1572c805361c2776166ac162366 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:40:01 +0100
Subject: gnu: r-epi: Update to 2.44.

* gnu/packages/cran.scm (r-epi): Update to 2.44.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 73719042b8..cc22283da9 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -13510,14 +13510,14 @@ model with finite state space using the Aalen-Johansen estimator.")
 (define-public r-epi
   (package
     (name "r-epi")
-    (version "2.43")
+    (version "2.44")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "Epi" version))
        (sha256
         (base32
-         "0wsjvilcivrhy2kh2dcagkzy7bjmfa0sq9xjpv6qb4b0nc0mv089"))))
+         "1wcxr1f7irgfdwzz4vf67114yhxrhxxxnhy4hfaww0zy91vzxx10"))))
     (properties `((upstream-name . "Epi")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From 34471fa1b21b32673da05563a3568aba79826a7f Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:40:04 +0100
Subject: gnu: r-shinyjqui: Update to 0.4.0.

* gnu/packages/cran.scm (r-shinyjqui): Update to 0.4.0.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index cc22283da9..5617415eba 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -13968,14 +13968,14 @@ several common set, element and attribute related tasks.")
 (define-public r-shinyjqui
   (package
     (name "r-shinyjqui")
-    (version "0.3.3")
+    (version "0.4.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "shinyjqui" version))
        (sha256
         (base32
-         "0n4ijxmkp8x6dwrsxwvx0zgd8b5129cmn6q6rrav38v1q5k8889x"))
+         "0ins0pmfis34jr0rimsp1k1aw856r3xjdnsvv8lkwqhvp58nzqah"))
        (snippet
         '(begin
            (delete-file "inst/www/shinyjqui.min.js")))))
-- 
cgit v1.2.3


From a9ab8761142663eedb373216cd93525474a8b7ee Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:40:07 +0100
Subject: gnu: r-gamlss-dist: Update to 5.3-2.

* gnu/packages/cran.scm (r-gamlss-dist): Update to 5.3-2.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 5617415eba..6b797675f4 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -14185,13 +14185,13 @@ such software by imputing dropout events.")
 (define-public r-gamlss-dist
   (package
     (name "r-gamlss-dist")
-    (version "5.1-7")
+    (version "5.3-2")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "gamlss.dist" version))
        (sha256
-        (base32 "0nzgq3rnziy0i2zxn88hqy3pakpyin2m2csk9j3zg39si66c6wcq"))))
+        (base32 "1lyf2rvkplywgyhcni93k52z3b89vv86yrgl38dx3ln3436r5ahc"))))
     (properties `((upstream-name . "gamlss.dist")))
     (build-system r-build-system)
     (propagated-inputs `(("r-mass" ,r-mass)))
-- 
cgit v1.2.3


From 8c866232e1b219e2047418767d5b289bdfb7739b Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:40:10 +0100
Subject: gnu: r-units: Update to 0.7-0.

* gnu/packages/cran.scm (r-units): Update to 0.7-0.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 6b797675f4..8a225d843e 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -15144,14 +15144,14 @@ utilities for sequence data management under the ACNUC system.")
 (define-public r-units
   (package
     (name "r-units")
-    (version "0.6-7")
+    (version "0.7-0")
     (source
       (origin
         (method url-fetch)
         (uri (cran-uri "units" version))
         (sha256
           (base32
-            "1rdpbkiqcabz00fqzzs98v89v4cgvcd4pb00pwxzkq6vmwmscwrz"))))
+            "0kwfcrrbcwl7s50n1wp33vswqzmprh91clvakbd1jpznqpg5m3js"))))
     (build-system r-build-system)
     (inputs
      `(("udunits" ,udunits)))
-- 
cgit v1.2.3


From 5a3996538c61148dde8de17f788a1a0dbf42b6f7 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:40:13 +0100
Subject: gnu: r-deldir: Update to 0.2-10.

* gnu/packages/cran.scm (r-deldir): Update to 0.2-10.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 8a225d843e..4e1a0282ee 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -15273,14 +15273,14 @@ sampling.")
 (define-public r-deldir
   (package
     (name "r-deldir")
-    (version "0.2-9")
+    (version "0.2-10")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "deldir" version))
        (sha256
         (base32
-         "0jfwff5kk0zraspsvbk26lphl3fnrc6xmhl4690hr0a5k177ildm"))))
+         "08ij6zb6id71zk6gzs9z779y49y41c2gpi7p7mljnlw7py92g8k5"))))
     (build-system r-build-system)
     (native-inputs `(("gfortran" ,gfortran)))
     (home-page "https://cran.r-project.org/web/packages/deldir")
-- 
cgit v1.2.3


From ab8c8693c1d504224fd9a51d5eb53d502db0bad4 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:40:17 +0100
Subject: gnu: r-genetics: Update to 1.3.8.1.3.

* gnu/packages/cran.scm (r-genetics): Update to 1.3.8.1.3.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 4e1a0282ee..058e15c289 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -15462,14 +15462,14 @@ genetics of complex population dynamics.")
 (define-public r-genetics
   (package
     (name "r-genetics")
-    (version "1.3.8.1.2")
+    (version "1.3.8.1.3")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "genetics" version))
        (sha256
         (base32
-         "1v0ylnia6c44v356dsmnkx6054vcxazpzsrdh3yph5ch5vg6gjrh"))))
+         "0lljxvz7nc6y2z303icphar2niir0i407w5cyhy2pwspd9gwkwpy"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-combinat" ,r-combinat)
-- 
cgit v1.2.3


From b96724c423fc582d5e510fad0b6a893db4a7fb20 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:40:20 +0100
Subject: gnu: r-arsenal: Update to 3.6.2.

* gnu/packages/cran.scm (r-arsenal): Update to 3.6.2.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 058e15c289..09bfd12b97 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -15583,14 +15583,14 @@ generalized linear models, and quantile regression.")
 (define-public r-arsenal
   (package
     (name "r-arsenal")
-    (version "3.6.1")
+    (version "3.6.2")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "arsenal" version))
        (sha256
         (base32
-         "13ql3rb79a764ppsc1sqi8glzzkw79la0j2ahzbxgz7cz879sazy"))))
+         "0spm0s23xs5bm88slkz6a65mbs663qhnravwxp7rkdkr378vb5fn"))))
     (properties `((upstream-name . "arsenal")))
     (build-system r-build-system)
     (propagated-inputs `(("r-knitr" ,r-knitr)))
-- 
cgit v1.2.3


From a5cfb3f330e739485e2fb82d3c4941a2700d8297 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:40:23 +0100
Subject: gnu: r-farver: Update to 2.1.0.

* gnu/packages/cran.scm (r-farver): Update to 2.1.0.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 09bfd12b97..39708dbcef 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -16206,14 +16206,14 @@ consists of @code{grid} grobs and viewports that can then be manipulated with
 (define-public r-farver
   (package
     (name "r-farver")
-    (version "2.0.3")
+    (version "2.1.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "farver" version))
        (sha256
         (base32
-         "1k75v07dsfkjra2gsgxg9s55cw3b46b1nh960kqphq7cg7gr058f"))))
+         "1x6ffwxqbrwlylnk995jz2a6nz2y9z59jaq0ncpni7q40w367j75"))))
     (build-system r-build-system)
     (home-page "https://github.com/thomasp85/farver")
     (synopsis "Vectorized color conversion and comparison")
-- 
cgit v1.2.3


From df20df3512e324d737f784513257024a2eba1a31 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:40:26 +0100
Subject: gnu: r-ggforce: Update to 0.3.3.

* gnu/packages/cran.scm (r-ggforce): Update to 0.3.3.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 39708dbcef..44aa815f38 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -16359,14 +16359,14 @@ sets of URLs.")
 (define-public r-ggforce
   (package
     (name "r-ggforce")
-    (version "0.3.2")
+    (version "0.3.3")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "ggforce" version))
        (sha256
         (base32
-         "1lplxyq5bgx90dgaimhynpcywag1gp6vlsy7q52ay1nfc35qmkjc"))))
+         "0bwzjbjl678xvc2ihm80dwn9pidwafqjdab3k299csys16s3na1a"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-ggplot2" ,r-ggplot2)
-- 
cgit v1.2.3


From 744190fe45575aa5dc30ee5f227926826fd95eb0 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:40:29 +0100
Subject: gnu: r-ggraph: Update to 2.0.5.

* gnu/packages/cran.scm (r-ggraph): Update to 2.0.5.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 44aa815f38..9f0c8ca760 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -16432,14 +16432,14 @@ databases, including ENA, PDB or ChEMBL are also accessible.")
 (define-public r-ggraph
   (package
     (name "r-ggraph")
-    (version "2.0.4")
+    (version "2.0.5")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "ggraph" version))
        (sha256
         (base32
-         "1j3xf4fsv0i0gbppdrw4yprfyk53wx6s8nvnkipi2ywbm7cr4q4w"))))
+         "0m4n8iw2b9jk8hcy5blg5w59zsqcpsbv27wbw598dvljpafx8sp3"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-digest" ,r-digest)
-- 
cgit v1.2.3


From 6802fe3cb72633731cb46e74de178642716513ca Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:40:32 +0100
Subject: gnu: r-xmlparsedata: Update to 1.0.5.

* gnu/packages/cran.scm (r-xmlparsedata): Update to 1.0.5.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 9f0c8ca760..1b339938d1 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -17054,14 +17054,14 @@ regular expressions from human readable expressions")
 (define-public r-xmlparsedata
   (package
     (name "r-xmlparsedata")
-    (version "1.0.4")
+    (version "1.0.5")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "xmlparsedata" version))
        (sha256
         (base32
-         "177vfyjrqfi3wam8scpsradap1lv35yc25xq745dr7gabg116yrq"))))
+         "1c6bnz3ng1qw7sfip8wq3a4dn36a4d6rbja0sadn0a4pbsmk8q3n"))))
     (properties `((upstream-name . "xmlparsedata")))
     (build-system r-build-system)
     (home-page "https://github.com/r-lib/xmlparsedata#readme")
-- 
cgit v1.2.3


From fa82677b275a99d1538dc1b2190ce2b3f1ae7280 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:40:36 +0100
Subject: gnu: r-dalex: Update to 2.1.1.

* gnu/packages/cran.scm (r-dalex): Update to 2.1.1.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 1b339938d1..cab5edae05 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -17482,14 +17482,14 @@ been used in the call to @code{aov}.")
 (define-public r-dalex
   (package
     (name "r-dalex")
-    (version "2.0.1")
+    (version "2.1.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "DALEX" version))
        (sha256
         (base32
-         "1hiknx55d91abyfj3w4a2xxin7f1q8h5k0041m7w93xjdc4kis98"))))
+         "1dnqsml94s648w8swsrq8spddnd4mj5pl3q6xxr917w6a1jxgyfz"))))
     (properties `((upstream-name . "DALEX")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From ce5c9704b36cc3a783d352ecc157affc51c2ecc7 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:40:40 +0100
Subject: gnu: r-kableextra: Update to 1.3.4.

* gnu/packages/cran.scm (r-kableextra): Update to 1.3.4.
[propagated-inputs]: Add r-svglite.
---
 gnu/packages/cran.scm | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index cab5edae05..ed617a2563 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -17746,14 +17746,14 @@ LargeVis method of Tang et al. (2016) is also provided.")
 (define-public r-kableextra
   (package
     (name "r-kableextra")
-    (version "1.3.1")
+    (version "1.3.4")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "kableExtra" version))
        (sha256
         (base32
-         "1zixccpgy9x95fgzfgxc43pm020c80c21flch71klc3zzzsq53gf"))))
+         "1c5vzy95cbz36jwyssr927qicrayifinv861rvnmg4nghb1gl7q9"))))
     (properties `((upstream-name . "kableExtra")))
     (build-system r-build-system)
     (propagated-inputs
@@ -17767,6 +17767,7 @@ LargeVis method of Tang et al. (2016) is also provided.")
        ("r-rvest" ,r-rvest)
        ("r-scales" ,r-scales)
        ("r-stringr" ,r-stringr)
+       ("r-svglite" ,r-svglite)
        ("r-viridislite" ,r-viridislite)
        ("r-webshot" ,r-webshot)
        ("r-xml2" ,r-xml2)))
-- 
cgit v1.2.3


From a9797ab65835bcde62c3042940db164537d77373 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:40:43 +0100
Subject: gnu: r-parameters: Update to 0.12.0.

* gnu/packages/cran.scm (r-parameters): Update to 0.12.0.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index ed617a2563..68e30a3205 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -18263,14 +18263,14 @@ in pipelines.")
 (define-public r-parameters
   (package
     (name "r-parameters")
-    (version "0.11.0")
+    (version "0.12.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "parameters" version))
        (sha256
         (base32
-         "020k3vxnp0vjrlkcxx5vj30vag474hw48zxzw9315whsq4hhhbqc"))))
+         "0dfqn4l4qmlpwmdva2ahyhlngkzdm0sgiirbdrf3mbbw52bhlmpm"))))
     (properties `((upstream-name . "parameters")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From 894308dddbb1ad2b9b40ee157def90dab86f87a1 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:40:46 +0100
Subject: gnu: r-lifecycle: Update to 1.0.0.

* gnu/packages/cran.scm (r-lifecycle): Update to 1.0.0.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 68e30a3205..37c1b2b80d 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -18348,14 +18348,14 @@ atmospheric physics.")
 (define-public r-lifecycle
   (package
     (name "r-lifecycle")
-    (version "0.2.0")
+    (version "1.0.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "lifecycle" version))
        (sha256
         (base32
-         "0912865c6675fsblrfdk6s568krsj1x8qbk1kipy7m05xs6nwx19"))))
+         "13hgxk93q9387s8dnqpm8dfx610y0pr76khqksj4kbgj2fr4lcq3"))))
     (properties `((upstream-name . "lifecycle")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From 8bf21d40767fde8e0a1204d0cc69d41301fbe1f1 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:40:49 +0100
Subject: gnu: r-gamlss: Update to 5.3-1.

* gnu/packages/cran.scm (r-gamlss): Update to 5.3-1.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 37c1b2b80d..812d37e464 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -19583,14 +19583,14 @@ models.")
 (define-public r-gamlss
   (package
     (name "r-gamlss")
-    (version "5.2-0")
+    (version "5.3-1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "gamlss" version))
        (sha256
         (base32
-         "1q82md0439si0n7vqbbbdk45sjr0ad7i8mgrn3kwnr4h213pb4nk"))))
+         "1ngf6g4zixwm6ni5r0fs0f6132xd2f2a6mlski9hlqnvvwb46iwr"))))
     (properties `((upstream-name . "gamlss")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From 61967afbc56fdf2459fbd12d98982be42f48b226 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:40:53 +0100
Subject: gnu: r-imager: Update to 0.42.7.

* gnu/packages/cran.scm (r-imager): Update to 0.42.7.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 812d37e464..0ff1ea8452 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -20871,14 +20871,14 @@ number embedded in the file rather than the file extension.")
 (define-public r-imager
   (package
     (name "r-imager")
-    (version "0.42.3")
+    (version "0.42.7")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "imager" version))
        (sha256
         (base32
-         "1wxvbv803222gjrf1ys6a349xlnmmdw3kqgi93piq9gq7lahihvg"))))
+         "1dq0rblnrmnk689bcdmml179gk9lff8x92s2npkjllgjq5q2vfpd"))))
     (properties `((upstream-name . "imager")))
     (build-system r-build-system)
     (inputs
-- 
cgit v1.2.3


From 60f85395263dd7d9dead523024150ece7f0932e3 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:40:56 +0100
Subject: gnu: r-isocodes: Update to 2021.02.24.

* gnu/packages/cran.scm (r-isocodes): Update to 2021.02.24.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 0ff1ea8452..36d6f89b06 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -21945,14 +21945,14 @@ and Euclidean distance is particularly fast.")
 (define-public r-isocodes
   (package
     (name "r-isocodes")
-    (version "2020.12.04")
+    (version "2021.02.24")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "ISOcodes" version))
        (sha256
         (base32
-         "18373rkhmwm7y2drvfbhrxkqw9d23avf0ndvh0fg00z4djvddkjx"))))
+         "19irnn2yi1bzhf03g666la84kj8040f5913kfrmd16dfnjy6j9qm"))))
     (properties `((upstream-name . "ISOcodes")))
     (build-system r-build-system)
     (home-page "https://cran.r-project.org/package=ISOcodes")
-- 
cgit v1.2.3


From b631f7f8e4fd898ba62ad9402e247ef81c1ed35b Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:40:59 +0100
Subject: gnu: r-openmx: Update to 2.19.1.

* gnu/packages/cran.scm (r-openmx): Update to 2.19.1.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 36d6f89b06..d3fe280ef4 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -22421,14 +22421,14 @@ Complete access to optimized C functions is made available with
 (define-public r-openmx
   (package
     (name "r-openmx")
-    (version "2.18.1")
+    (version "2.19.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "OpenMx" version))
        (sha256
         (base32
-         "0gyjps0l3ig90piccgd04s63cz65kk5i5l9iyakps4bv27h1lzwm"))))
+         "0fbndmwb3krypsavgm3blqkhh8blmi3p186yxmvgv3a9m6r154rj"))))
     (properties `((upstream-name . "OpenMx")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From e59f4ecda8809d29281bb29502492b95816e5f26 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:41:02 +0100
Subject: gnu: r-erm: Update to 1.0-2.

* gnu/packages/cran.scm (r-erm): Update to 1.0-2.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index d3fe280ef4..f468369d35 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -22727,14 +22727,14 @@ Latent regression models and plausible value imputation are also supported.")
 (define-public r-erm
   (package
     (name "r-erm")
-    (version "1.0-1")
+    (version "1.0-2")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "eRm" version))
        (sha256
         (base32
-         "0njqzznnhnkvalmhiq5yq1w7gwp2myki5cv61w42ydvd27hdyyg9"))))
+         "0smym010kswc5vx90qr3x1vl16xj1x1i54rvrj006dc4agc1vmlk"))))
     (properties `((upstream-name . "eRm")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From 2be47c7a9a5eaa1b4c05f0272d3d60a94a6c0f34 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:41:07 +0100
Subject: gnu: r-isoband: Update to 0.2.4.

* gnu/packages/cran.scm (r-isoband): Update to 0.2.4.
[propagated-inputs]: Remove r-testthat.
---
 gnu/packages/cran.scm | 6 ++----
 1 file changed, 2 insertions(+), 4 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index f468369d35..5d6a045f60 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -23365,18 +23365,16 @@ Encyclopedia of Integer Sequences} (OEIS) in the function help page.")
 (define-public r-isoband
   (package
     (name "r-isoband")
-    (version "0.2.3")
+    (version "0.2.4")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "isoband" version))
        (sha256
         (base32
-         "1zkzdc39dpw2z59bjck27nimz9a2vskmw0f7wb17s53dvy7k3lzr"))))
+         "0z1qpxcl8b6fi691fbdr3vrb19mn4pas1iff62zl1bafzbdvpmcn"))))
     (properties `((upstream-name . "isoband")))
     (build-system r-build-system)
-    (propagated-inputs
-     `(("r-testthat" ,r-testthat)))
     (native-inputs
      `(("r-knitr" ,r-knitr)))
     (home-page "https://github.com/wilkelab/isoband")
-- 
cgit v1.2.3


From abdb1090a7331734dc40355885d484d4dda8171e Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:41:14 +0100
Subject: gnu: r-flexsurv: Update to 2.0.

* gnu/packages/cran.scm (r-flexsurv): Update to 2.0.
[propagated-inputs]: Add r-assertthat, r-dplyr, r-generics, r-magrittr,
r-matrix, r-numderiv, r-purrr, r-rlang, r-rstpm2, and r-tidyselect.
---
 gnu/packages/cran.scm | 18 ++++++++++++++----
 1 file changed, 14 insertions(+), 4 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 5d6a045f60..e840b2aa89 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -25084,26 +25084,36 @@ censored data.")
 (define-public r-flexsurv
   (package
     (name "r-flexsurv")
-    (version "1.1.1")
+    (version "2.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "flexsurv" version))
        (sha256
         (base32
-         "0x7p1rv51pplfyyzcg63ssb8z56mig7y0363hkr0219w3cvyq9nr"))))
+         "0vshsijqlzsz0xh426vsswpai1v5c990ggyniqqzsjbg3mn8dbl9"))))
     (properties `((upstream-name . "flexsurv")))
     (build-system r-build-system)
     (propagated-inputs
-     `(("r-desolve" ,r-desolve)
+     `(("r-assertthat" ,r-assertthat)
+       ("r-desolve" ,r-desolve)
+       ("r-dplyr" ,r-dplyr)
+       ("r-generics" ,r-generics)
+       ("r-magrittr" ,r-magrittr)
+       ("r-matrix" ,r-matrix)
        ("r-mstate" ,r-mstate)
        ("r-muhaz" ,r-muhaz)
        ("r-mvtnorm" ,r-mvtnorm)
+       ("r-numderiv" ,r-numderiv)
+       ("r-purrr" ,r-purrr)
        ("r-quadprog" ,r-quadprog)
        ("r-rcpp" ,r-rcpp)
+       ("r-rlang" ,r-rlang)
+       ("r-rstpm2" ,r-rstpm2)
        ("r-survival" ,r-survival)
        ("r-tibble" ,r-tibble)
-       ("r-tidyr" ,r-tidyr)))
+       ("r-tidyr" ,r-tidyr)
+       ("r-tidyselect" ,r-tidyselect)))
     (native-inputs
      `(("r-knitr" ,r-knitr)))
     (home-page "https://github.com/chjackson/flexsurv-dev")
-- 
cgit v1.2.3


From 8b1f08ba04cfd0508cb45f470d6ea1a043b53cfe Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:41:18 +0100
Subject: gnu: r-survminer: Update to 0.4.9.

* gnu/packages/cran.scm (r-survminer): Update to 0.4.9.
[propagated-inputs]: Add r-ggtext.
---
 gnu/packages/cran.scm | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index e840b2aa89..e78a24c893 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -25279,14 +25279,14 @@ p-value approximations.")
 (define-public r-survminer
   (package
     (name "r-survminer")
-    (version "0.4.8")
+    (version "0.4.9")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "survminer" version))
        (sha256
         (base32
-         "1niysd89mxb2a6ncvzm1s6xgfvq3psba65af0whh2p56r2hwrwff"))))
+         "0byh0wxdbjfwdrzsnqv4xlmnik6lj0vkkzfxy7lssk8dv5zmj7nz"))))
     (properties `((upstream-name . "survminer")))
     (build-system r-build-system)
     (propagated-inputs
@@ -25294,6 +25294,7 @@ p-value approximations.")
        ("r-dplyr" ,r-dplyr)
        ("r-ggplot2" ,r-ggplot2)
        ("r-ggpubr" ,r-ggpubr)
+       ("r-ggtext" ,r-ggtext)
        ("r-gridextra" ,r-gridextra)
        ("r-magrittr" ,r-magrittr)
        ("r-maxstat" ,r-maxstat)
-- 
cgit v1.2.3


From b5b344fb2684261264dd20cb20b1a2eeb2359788 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:41:23 +0100
Subject: gnu: r-rsample: Update to 0.0.9.

* gnu/packages/cran.scm (r-rsample): Update to 0.0.9.
[propagated-inputs]: Remove r-modeldata.
---
 gnu/packages/cran.scm | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index e78a24c893..16b9a89235 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -25612,14 +25612,14 @@ sliding windows are to be created.")
 (define-public r-rsample
   (package
     (name "r-rsample")
-    (version "0.0.8")
+    (version "0.0.9")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "rsample" version))
        (sha256
         (base32
-         "1psmxk16d4bz1v05x0gb9hn4brkdjxw8hjbxmj62snichnix3q3i"))))
+         "03qwsvylgmj2a2h764mzy0x57pgzmvjvl0ypmbn4lcf912bvrd2c"))))
     (properties `((upstream-name . "rsample")))
     (build-system r-build-system)
     (propagated-inputs
@@ -25627,7 +25627,6 @@ sliding windows are to be created.")
        ("r-ellipsis" ,r-ellipsis)
        ("r-furrr" ,r-furrr)
        ("r-generics" ,r-generics)
-       ("r-modeldata" ,r-modeldata)
        ("r-purrr" ,r-purrr)
        ("r-rlang" ,r-rlang)
        ("r-slider" ,r-slider)
-- 
cgit v1.2.3


From 2d89c723aba05e76c8863b779510dd0dc34935d7 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:41:26 +0100
Subject: gnu: r-dicedesign: Update to 1.9.

* gnu/packages/cran.scm (r-dicedesign): Update to 1.9.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 16b9a89235..a0d3e89e23 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -25646,14 +25646,14 @@ different types of resampling objects (e.g. bootstrap, cross-validation).")
 (define-public r-dicedesign
   (package
     (name "r-dicedesign")
-    (version "1.8-1")
+    (version "1.9")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "DiceDesign" version))
        (sha256
         (base32
-         "11s1m543kxd6gv4amh8z6pph1n67sj9sfwm6hjy83wfs65syf5vp"))))
+         "1a8ixa65xgyfri03cviic8qi2plbhdyz8m02bwif8w94w0q3ghlk"))))
     (properties `((upstream-name . "DiceDesign")))
     (build-system r-build-system)
     (home-page "http://dice.emse.fr/")
-- 
cgit v1.2.3


From e08e5f9fe2adae3249c396e643e4737036178dfd Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:41:30 +0100
Subject: gnu: r-tune: Update to 0.1.3.

* gnu/packages/cran.scm (r-tune): Update to 0.1.3.
[propagated-inputs]: Remove r-hardhat.
---
 gnu/packages/cran.scm | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index a0d3e89e23..1e627fbfd3 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -25698,14 +25698,14 @@ for creating, simulating, or validating values for such parameters.")
 (define-public r-tune
   (package
     (name "r-tune")
-    (version "0.1.2")
+    (version "0.1.3")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "tune" version))
        (sha256
         (base32
-         "0ja7rjkjj88v3ngrc6izcz2qh9qv4s8abgcafmvx2ihgz99hds37"))))
+         "05r5jzg96g2z10a2w4w8wq1ysfaxr91acwrvn75pmcy4rmixf293"))))
     (properties `((upstream-name . "tune")))
     (build-system r-build-system)
     (propagated-inputs
@@ -25717,7 +25717,6 @@ for creating, simulating, or validating values for such parameters.")
        ("r-ggplot2" ,r-ggplot2)
        ("r-glue" ,r-glue)
        ("r-gpfit" ,r-gpfit)
-       ("r-hardhat" ,r-hardhat)
        ("r-parsnip" ,r-parsnip)
        ("r-purrr" ,r-purrr)
        ("r-recipes" ,r-recipes)
-- 
cgit v1.2.3


From ca718b9e3496fdcf74fd3ec2a5699d017d974932 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:41:33 +0100
Subject: gnu: r-paradox: Update to 0.7.1.

* gnu/packages/cran.scm (r-paradox): Update to 0.7.1.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 1e627fbfd3..349598f3d9 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -26735,13 +26735,13 @@ package also supersedes the package @code{BBmisc}.")
 (define-public r-paradox
   (package
     (name "r-paradox")
-    (version "0.7.0")
+    (version "0.7.1")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "paradox" version))
               (sha256
                (base32
-                "1fz6sdwvvifm4qbmwgm27dil278mswvcfw8bbsvli5v4l1ghw8kj"))))
+                "1difp0bzsfxcmbm1snahh3i6417k1a2w4mnjx65p20n2yiclmrgs"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-backports" ,r-backports)
-- 
cgit v1.2.3


From 9a9d470ae04acfd68c5d2f33ef633679c73cf6e3 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:41:38 +0100
Subject: gnu: r-mlr3: Update to 0.11.0.

* gnu/packages/cran.scm (r-mlr3): Update to 0.11.0.
[propagated-inputs]: Add r-palmerpenguins and r-parallelly.
---
 gnu/packages/cran.scm | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 349598f3d9..becc25c6ab 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -26760,13 +26760,13 @@ implemented as @code{R6} classes.")
 (define-public r-mlr3
   (package
     (name "r-mlr3")
-    (version "0.10.0")
+    (version "0.11.0")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "mlr3" version))
               (sha256
                (base32
-                "1arqijbbmhv57mj8kyq30zxykah83ab1d1c7gs0cxs0xhfwln66g"))))
+                "0qh9vdac1als2123wf51bwa7spdqk33iydlawi5n5dpci892iahl"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-r6" ,r-r6)
@@ -26779,7 +26779,9 @@ implemented as @code{R6} classes.")
        ("r-mlbench" ,r-mlbench)
        ("r-mlr3measures" ,r-mlr3measures)
        ("r-mlr3misc" ,r-mlr3misc)
+       ("r-palmerpenguins" ,r-palmerpenguins)
        ("r-paradox" ,r-paradox)
+       ("r-parallelly" ,r-parallelly)
        ("r-uuid" ,r-uuid)))
     (home-page "https://mlr3.mlr-org.com/")
     (synopsis "Machine Learning in R - Next Generation")
-- 
cgit v1.2.3


From bf7ad534e47013f56b0b3ad8c9956f4be07104d5 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:41:42 +0100
Subject: gnu: r-mlr3tuning: Update to 0.7.0.

* gnu/packages/cran.scm (r-mlr3tuning): Update to 0.7.0.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index becc25c6ab..fcd85edd41 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -26852,13 +26852,13 @@ annealing.")
 (define-public r-mlr3tuning
   (package
     (name "r-mlr3tuning")
-    (version "0.6.0")
+    (version "0.7.0")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "mlr3tuning" version))
               (sha256
                (base32
-                "0kxf9wl1jnwyrj2zfmiz12w2594407y44m0xxwp9b2lrwxk31wm7"))))
+                "0xpq16qij05nsfwg0qnfziqjvgk5wn0dgl0sb5gg3qsp1cs6vfqj"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-bbotk" ,r-bbotk)
-- 
cgit v1.2.3


From 6c714c19f8fae71f14eb28dd184f26203868ab4a Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:41:45 +0100
Subject: gnu: r-textshaping: Update to 0.3.1.

* gnu/packages/cran.scm (r-textshaping): Update to 0.3.1.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index fcd85edd41..2e642b21eb 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -27151,14 +27151,14 @@ clusterings as resolution increases.")
 (define-public r-textshaping
   (package
     (name "r-textshaping")
-    (version "0.3.0")
+    (version "0.3.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "textshaping" version))
        (sha256
         (base32
-         "053pbw45by96q62kjfnyc3d0ssar9svssrdqy6a09kdmdh75xdar"))))
+         "16y3amb9cxwq126q1mxssx7kswzalqf9n2437mi5n7q1nqby6wlq"))))
     (properties `((upstream-name . "textshaping")))
     (build-system r-build-system)
     (inputs
-- 
cgit v1.2.3


From 31c9810b7e778e86bc7712fe7eee60da34cfe4d5 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:41:48 +0100
Subject: gnu: r-ragg: Update to 1.1.1.

* gnu/packages/cran.scm (r-ragg): Update to 1.1.1.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 2e642b21eb..9ec0d952c0 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -27184,14 +27184,14 @@ the font tool-set provided by the @code{systemfonts} package.")
 (define-public r-ragg
   (package
     (name "r-ragg")
-    (version "0.4.1")
+    (version "1.1.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "ragg" version))
        (sha256
         (base32
-         "0443dhfi7bjfpap041vrnslw3ql3vpsxx18raz2w9nfdb7id8lsc"))))
+         "0nh1xxrxgdbq9anzkc6k3n519czp9hqyiizakm3m2gl4l4w0vp0q"))))
     (properties `((upstream-name . "ragg")))
     (build-system r-build-system)
     (inputs
-- 
cgit v1.2.3


From 8a51be3cddf2b829e4234a23aad347fb2381281a Mon Sep 17 00:00:00 2001
From: Lars-Dominik Braun <ldb@leibniz-psychology.org>
Date: Fri, 12 Mar 2021 14:06:18 +0100
Subject: gnu: Add r-prereg.

* gnu/packages/cran.scm (r-prereg): New variable.
---
 gnu/packages/cran.scm | 25 ++++++++++++++++++++++++-
 1 file changed, 24 insertions(+), 1 deletion(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 9ec0d952c0..b65288390b 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -26,7 +26,7 @@
 ;;; Copyright © 2020 Eric Brown <ecbrown@ericcbrown.com>
 ;;; Copyright © 2020 Peter Lo <peterloleungyau@gmail.com>
 ;;; Copyright © 2020 Rafael Luque Leiva <rafael.luque@osoco.es>
-;;; Copyright © 2020 Lars-Dominik Braun <ldb@leibniz-psychology.org>
+;;; Copyright © 2020, 2021 Lars-Dominik Braun <ldb@leibniz-psychology.org>
 ;;; Copyright © 2020 Vinicius Monego <monego@posteo.net>
 ;;; Copyright © 2020 Antoine Côté <antoine.cote@posteo.net>
 ;;; Copyright © 2020 Arun Isaac <arunisaac@systemreboot.net>
@@ -27290,3 +27290,26 @@ from a source package.  @code{pkgdown} converts your documentation, vignettes,
 README file, and more to HTML making it easy to share information about your
 package online.")
     (license license:expat)))
+
+(define-public r-prereg
+  (package
+    (name "r-prereg")
+    (version "0.5.0")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (cran-uri "prereg" version))
+        (sha256
+          (base32
+            "0bck13iiaxwpqh0rd45mp1s5d8z62ggg0wa7rmyi8a65aywiypsi"))))
+    (properties `((upstream-name . "prereg")))
+    (build-system r-build-system)
+    (propagated-inputs
+      `(("r-rmarkdown" ,r-rmarkdown)))
+    (home-page "https://github.com/crsh/prereg")
+    (synopsis
+      "R Markdown Templates to preregister Scientific Studies")
+    (description
+      "This package provides a collection of templates to author
+preregistration documents for scientific studies in PDF format.")
+    (license license:gpl3)))
-- 
cgit v1.2.3


From 23bfd152c286b7b6fd9ca6921ec9f78474e973db Mon Sep 17 00:00:00 2001
From: Lars-Dominik Braun <ldb@leibniz-psychology.org>
Date: Fri, 12 Mar 2021 14:09:45 +0100
Subject: gnu: Add r-ez.

* gnu/packages/cran.scm (r-ez): New variable.
---
 gnu/packages/cran.scm | 40 ++++++++++++++++++++++++++++++++++++++++
 1 file changed, 40 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index b65288390b..e6b205077b 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -27313,3 +27313,43 @@ package online.")
       "This package provides a collection of templates to author
 preregistration documents for scientific studies in PDF format.")
     (license license:gpl3)))
+
+(define-public r-ez
+  (package
+    (name "r-ez")
+    (version "4.4-0")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (cran-uri "ez" version))
+        (sha256
+          (base32
+            "0a58s94x576dfz7wcbivrr2hmdh5x1vy16zwkqp9fmdzqx38pagq"))))
+    (properties `((upstream-name . "ez")))
+    (build-system r-build-system)
+    (propagated-inputs
+      `(("r-car" ,r-car)
+        ("r-ggplot2" ,r-ggplot2)
+        ("r-lme4" ,r-lme4)
+        ("r-mass" ,r-mass)
+        ("r-matrix" ,r-matrix)
+        ("r-mgcv" ,r-mgcv)
+        ("r-plyr" ,r-plyr)
+        ("r-reshape2" ,r-reshape2)
+        ("r-scales" ,r-scales)
+        ("r-stringr" ,r-stringr)))
+    (home-page "https://github.com/mike-lawrence/ez")
+    (synopsis "Easy Analysis and Visualization of Factorial Experiments")
+    (description
+     "Facilitates easy analysis of factorial experiments, including purely
+within-Ss designs (a.k.a. \"repeated measures\"), purely between-Ss designs,
+and mixed within-and-between-Ss designs.  The functions in this package aim to
+provide simple, intuitive and consistent specification of data analysis and
+visualization.  Visualization functions also include design visualization for
+pre-analysis data auditing, and correlation matrix visualization.  Finally,
+this package includes functions for non-parametric analysis, including
+permutation tests and bootstrap resampling.  The bootstrap function obtains
+predictions either by cell means or by more advanced/powerful mixed effects
+models, yielding predictions and confidence intervals that may be easily
+visualized at any level of the experiment's design.")
+    (license license:gpl2+)))
-- 
cgit v1.2.3


From ae807fdb3736f8fbe60caa2ac1fbf2511aab561e Mon Sep 17 00:00:00 2001
From: Lars-Dominik Braun <ldb@leibniz-psychology.org>
Date: Mon, 15 Mar 2021 09:18:23 +0100
Subject: gnu: Add r-qdapregex.

* gnu/packages/cran.scm (r-qdapregex): New variable.
---
 gnu/packages/cran.scm | 26 ++++++++++++++++++++++++++
 1 file changed, 26 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index e6b205077b..c41d6d953d 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -27353,3 +27353,29 @@ predictions either by cell means or by more advanced/powerful mixed effects
 models, yielding predictions and confidence intervals that may be easily
 visualized at any level of the experiment's design.")
     (license license:gpl2+)))
+
+(define-public r-qdapregex
+  (package
+    (name "r-qdapregex")
+    (version "0.7.2")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (cran-uri "qdapRegex" version))
+        (sha256
+          (base32
+            "1xa8q1way3gjadrjh3mv3xr4c6b4h16nd2c6lgl969difplpfz9p"))))
+    (properties `((upstream-name . "qdapRegex")))
+    (build-system r-build-system)
+    (propagated-inputs `(("r-stringi" ,r-stringi)))
+    (home-page
+      "https://trinker.github.com/qdapRegex/")
+    (synopsis
+      "Regular Expression Removal, Extraction, and Replacement Tools")
+    (description
+      "This package provides a collection of regular expression tools
+associated with the @code{qdap} package that may be useful outside of the
+context of discourse analysis.  Tools include removal/extraction/replacement of
+abbreviations, dates, dollar amounts, email addresses, hash tags, numbers,
+percentages, citations, person tags, phone numbers, times, and zip codes.")
+    (license license:gpl2)))
-- 
cgit v1.2.3


From 4bc1707dba0098d416cbe4b53a3077025a2cc422 Mon Sep 17 00:00:00 2001
From: Lars-Dominik Braun <ldb@leibniz-psychology.org>
Date: Mon, 15 Mar 2021 09:20:07 +0100
Subject: gnu: Add r-mgsub.

* gnu/packages/cran.scm (r-mgsub): New variable.
---
 gnu/packages/cran.scm | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index c41d6d953d..af5055c392 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -27379,3 +27379,27 @@ context of discourse analysis.  Tools include removal/extraction/replacement of
 abbreviations, dates, dollar amounts, email addresses, hash tags, numbers,
 percentages, citations, person tags, phone numbers, times, and zip codes.")
     (license license:gpl2)))
+
+(define-public r-mgsub
+  (package
+    (name "r-mgsub")
+    (version "1.7.2")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (cran-uri "mgsub" version))
+        (sha256
+          (base32
+            "02l1b96zv36ia0c97wgcwfhi037mbn3wy9c64hcw0n0w67yj77rr"))))
+    (properties `((upstream-name . "mgsub")))
+    (build-system r-build-system)
+    (native-inputs `(("r-knitr" ,r-knitr)))
+    (home-page
+      "https://cran.r-project.org/package=mgsub")
+    (synopsis
+      "Safe, Multiple, Simultaneous String Substitution")
+    (description
+      "Designed to enable simultaneous substitution in strings in a safe
+fashion.  Safe means it does not rely on placeholders (which can cause errors
+in same length matches).")
+    (license license:expat)))
-- 
cgit v1.2.3


From d332c5c7f2dcf9e3562a411cff2fa43808a326a3 Mon Sep 17 00:00:00 2001
From: Lars-Dominik Braun <ldb@leibniz-psychology.org>
Date: Mon, 15 Mar 2021 09:25:30 +0100
Subject: gnu: Add r-textshape.

* gnu/packages/cran.scm (r-textshape): New variable.
---
 gnu/packages/cran.scm | 23 +++++++++++++++++++++++
 1 file changed, 23 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index af5055c392..dd37ae0d6c 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -27403,3 +27403,26 @@ percentages, citations, person tags, phone numbers, times, and zip codes.")
 fashion.  Safe means it does not rely on placeholders (which can cause errors
 in same length matches).")
     (license license:expat)))
+
+(define-public r-textshape
+  (package
+    (name "r-textshape")
+    (version "1.7.1")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (cran-uri "textshape" version))
+        (sha256
+          (base32
+            "02111kj3kka84mpx7s19bjna9cas8diw5fxz51v5ggz0ldswa5pa"))))
+    (properties `((upstream-name . "textshape")))
+    (build-system r-build-system)
+    (propagated-inputs
+      `(("r-data-table" ,r-data-table)
+        ("r-slam" ,r-slam)
+        ("r-stringi" ,r-stringi)))
+    (home-page "http://github.com/trinker/textshape")
+    (synopsis "Tools for Reshaping Text")
+    (description
+      "Tools that can be used to reshape and restructure text data.")
+    (license license:gpl2)))
-- 
cgit v1.2.3


From bc82567b0bd69e630ae82e77943d5726f0af9e36 Mon Sep 17 00:00:00 2001
From: Lars-Dominik Braun <ldb@leibniz-psychology.org>
Date: Mon, 15 Mar 2021 09:28:28 +0100
Subject: gnu: Add r-syuzhet.

* gnu/packages/cran.scm (r-syuzhet): New variable.
---
 gnu/packages/cran.scm | 38 ++++++++++++++++++++++++++++++++++++++
 1 file changed, 38 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index dd37ae0d6c..6f8230278e 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -27426,3 +27426,41 @@ in same length matches).")
     (description
       "Tools that can be used to reshape and restructure text data.")
     (license license:gpl2)))
+
+(define-public r-syuzhet
+  (package
+    (name "r-syuzhet")
+    (version "1.0.6")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (cran-uri "syuzhet" version))
+        (sha256
+          (base32
+            "16iccqdbw02iw82nah6kwz3gwfghi864j2y698n4b9dyc386ijzv"))))
+    (properties `((upstream-name . "syuzhet")))
+    (build-system r-build-system)
+    (propagated-inputs
+      `(("r-dplyr" ,r-dplyr)
+        ("r-dtt" ,r-dtt)
+        ("r-nlp" ,r-nlp)
+        ("r-rlang" ,r-rlang)
+        ("r-textshape" ,r-textshape)
+        ("r-tidyr" ,r-tidyr)
+        ("r-zoo" ,r-zoo)))
+    (native-inputs `(("r-knitr" ,r-knitr)))
+    (home-page "https://github.com/mjockers/syuzhet")
+    (synopsis
+      "Extracts Sentiment and Sentiment-Derived Plot Arcs from Text")
+    (description
+      "Extracts sentiment and sentiment-derived plot arcs from text using a
+variety of sentiment dictionaries conveniently packaged for consumption by R
+users.  Implemented dictionaries include @dfn{syuzhet} (default) developed in the
+Nebraska Literary Lab, @dfn{afinn} developed by Finn Arup Nielsen, @dfn{bing}
+developed by Minqing Hu and Bing Liu, and @dfn{nrc} developed by Mohammad, Saif
+M.  and Turney, Peter D.  Applicable references are available in
+@file{README.md} and in the documentation for the @code{get_sentiment}
+function.  The package also provides a hack for implementing Stanford's coreNLP
+sentiment parser.  The package provides several methods for plot arc
+normalization.")
+    (license license:gpl3)))
-- 
cgit v1.2.3


From c3a1373c15908b347cc580abf8522693d21923bb Mon Sep 17 00:00:00 2001
From: Lars-Dominik Braun <ldb@leibniz-psychology.org>
Date: Mon, 15 Mar 2021 09:36:14 +0100
Subject: gnu: Add r-lexicon.

* gnu/packages/cran.scm (r-lexicon): New variable.
---
 gnu/packages/cran.scm | 23 +++++++++++++++++++++++
 1 file changed, 23 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 6f8230278e..f5ed504744 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -27464,3 +27464,26 @@ function.  The package also provides a hack for implementing Stanford's coreNLP
 sentiment parser.  The package provides several methods for plot arc
 normalization.")
     (license license:gpl3)))
+
+(define-public r-lexicon
+  (package
+    (name "r-lexicon")
+    (version "1.2.1")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (cran-uri "lexicon" version))
+        (sha256
+          (base32
+            "0x7rscsh6par2lj11sby7bmz41cxn63iiw51lgh29z09cg8j606c"))))
+    (properties `((upstream-name . "lexicon")))
+    (build-system r-build-system)
+    (propagated-inputs
+      `(("r-data-table" ,r-data-table)
+        ("r-syuzhet" ,r-syuzhet)))
+    (home-page "https://github.com/trinker/lexicon")
+    (synopsis "Lexicons for Text Analysis")
+    (description
+      "This package provides a collection of lexical hash tables, dictionaries,
+and word lists.")
+    (license license:gpl3)))
-- 
cgit v1.2.3


From 584c868fbd6fe5fea5715e2938fc80ec14446502 Mon Sep 17 00:00:00 2001
From: Lars-Dominik Braun <ldb@leibniz-psychology.org>
Date: Mon, 15 Mar 2021 09:38:23 +0100
Subject: gnu: Add r-english.

* gnu/packages/cran.scm (r-english): New variable.
---
 gnu/packages/cran.scm | 23 +++++++++++++++++++++++
 1 file changed, 23 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index f5ed504744..b8a57cdb28 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -27487,3 +27487,26 @@ normalization.")
       "This package provides a collection of lexical hash tables, dictionaries,
 and word lists.")
     (license license:gpl3)))
+
+(define-public r-english
+  (package
+    (name "r-english")
+    (version "1.2-5")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (cran-uri "english" version))
+        (sha256
+          (base32
+            "0d6rin40wy2y6k75x8d5qvf03rfy139f309wrl8xwbdb1h8fjkd1"))))
+    (properties `((upstream-name . "english")))
+    (build-system r-build-system)
+    (native-inputs `(("r-knitr" ,r-knitr)))
+    (home-page
+      "https://cran.r-project.org/package=english")
+    (synopsis "Translate Integers into English")
+    (description
+      "Allow numbers to be presented in an English language version, one, two,
+three, ...  Ordinals are also available, first, second, third, ...  and
+indefinite article choice, \"a\" or \"an\".")
+    (license license:gpl2)))
-- 
cgit v1.2.3


From 804fad34e8e0f74483e987cfe5f6a496c1debe74 Mon Sep 17 00:00:00 2001
From: Lars-Dominik Braun <ldb@leibniz-psychology.org>
Date: Mon, 15 Mar 2021 09:40:05 +0100
Subject: gnu: Add r-textclean.

* gnu/packages/cran.scm (r-textclean): New variable.
---
 gnu/packages/cran.scm | 35 +++++++++++++++++++++++++++++++++++
 1 file changed, 35 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index b8a57cdb28..7f6003ac01 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -27510,3 +27510,38 @@ and word lists.")
 three, ...  Ordinals are also available, first, second, third, ...  and
 indefinite article choice, \"a\" or \"an\".")
     (license license:gpl2)))
+
+(define-public r-textclean
+  (package
+    (name "r-textclean")
+    (version "0.9.3")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (cran-uri "textclean" version))
+        (sha256
+          (base32
+            "0kgjh6c4f14qkjc4fds7q7rpf4nkma3p0igm54fplmm3p853nvrz"))))
+    (properties `((upstream-name . "textclean")))
+    (build-system r-build-system)
+    (propagated-inputs
+      `(("r-data-table" ,r-data-table)
+        ("r-english" ,r-english)
+        ("r-glue" ,r-glue)
+        ("r-lexicon" ,r-lexicon)
+        ("r-mgsub" ,r-mgsub)
+        ("r-qdapregex" ,r-qdapregex)
+        ("r-stringi" ,r-stringi)
+        ("r-textshape" ,r-textshape)))
+    (home-page
+      "https://github.com/trinker/textclean")
+    (synopsis "Text Cleaning Tools")
+    (description
+      "Tools to clean and process text.  Tools are geared at checking for
+substrings that are not optimal for analysis and replacing or removing them
+(normalizing) with more analysis friendly substrings (see Sproat, Black, Chen,
+Kumar, Ostendorf, & Richards (2001) @url{doi:10.1006/csla.2001.0169}) or
+extracting them into new variables.  For example, emoticons are often used in
+text but not always easily handled by analysis algorithms.  The
+@code{replace_emoticon()} function replaces emoticons with word equivalents.")
+    (license license:gpl2)))
-- 
cgit v1.2.3


From e4150032027455ccf920e2f407754e93ca052dec Mon Sep 17 00:00:00 2001
From: Lars-Dominik Braun <ldb@leibniz-psychology.org>
Date: Mon, 15 Mar 2021 09:43:49 +0100
Subject: gnu: Add r-striprtf.

* gnu/packages/cran.scm (r-striprtf): New variable.
---
 gnu/packages/cran.scm | 23 +++++++++++++++++++++++
 1 file changed, 23 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 7f6003ac01..0ffc90488a 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -27545,3 +27545,26 @@ extracting them into new variables.  For example, emoticons are often used in
 text but not always easily handled by analysis algorithms.  The
 @code{replace_emoticon()} function replaces emoticons with word equivalents.")
     (license license:gpl2)))
+
+(define-public r-striprtf
+  (package
+    (name "r-striprtf")
+    (version "0.5.2")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (cran-uri "striprtf" version))
+        (sha256
+          (base32
+            "1ra6aalalig6drsj26z9s24lmb10zssagqrvgqqi4358zbm8gwcd"))))
+    (properties `((upstream-name . "striprtf")))
+    (build-system r-build-system)
+    (propagated-inputs
+      `(("r-magrittr" ,r-magrittr)
+        ("r-rcpp" ,r-rcpp)
+        ("r-stringr" ,r-stringr)))
+    (home-page "https://github.com/kota7/striprtf")
+    (synopsis "Extract Text from RTF File")
+    (description
+      "Extracts plain text from @dfn{Rich Text Format} (RTF) file.")
+    (license license:expat)))
-- 
cgit v1.2.3


From a64e355ea680bff5f6047011d936e3a3576d62c9 Mon Sep 17 00:00:00 2001
From: Lars-Dominik Braun <ldb@leibniz-psychology.org>
Date: Mon, 15 Mar 2021 10:06:08 +0100
Subject: gnu: Add r-ndjson.

* gnu/packages/cran.scm (r-ndjson): New variable.
---
 gnu/packages/cran.scm | 47 +++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 47 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 0ffc90488a..75c11c7af3 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -27568,3 +27568,50 @@ text but not always easily handled by analysis algorithms.  The
     (description
       "Extracts plain text from @dfn{Rich Text Format} (RTF) file.")
     (license license:expat)))
+
+(define-public r-ndjson
+  (package
+    (name "r-ndjson")
+    (version "0.8.0")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (cran-uri "ndjson" version))
+        (sha256
+          (base32
+            "0lvzbgfi1sg4kya1mvv67z14qk3vz9q57x22qh57xq8ampdkg812"))
+        (modules '((guix build utils)))
+        (snippet
+         '(begin
+            ;; unvendor gzstream
+            (for-each delete-file '("src/gzstream.cpp" "src/gzstream.h"))
+            #t))))
+    (properties `((upstream-name . "ndjson")))
+    (build-system r-build-system)
+    (arguments
+     '(#:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'use-system-gzstream
+           (lambda* (#:key inputs #:allow-other-keys)
+            (substitute* "src/Makevars"
+             (("PKG_LIBS = " all)
+              (string-append all "-lgzstream ")))
+             #t)))))
+    (inputs `(("zlib" ,zlib) ("gzstream" ,gzstream)))
+    (propagated-inputs
+      `(("r-data-table" ,r-data-table)
+        ("r-rcpp" ,r-rcpp)
+        ("r-tibble" ,r-tibble)))
+    (home-page "https://gitlab.com/hrbrmstr/ndjson")
+    (synopsis
+      "Wicked-Fast @dfn{Streaming JSON} (ndjson) Reader")
+    (description
+      "@dfn{Streaming JSON} (ndjson) has one JSON record per-line and many
+modern ndjson files contain large numbers of records.  These constructs may not
+be columnar in nature, but it is often useful to read in these files and
+\"flatten\" the structure out to enable working with the data in an R
+@code{data.frame}-like context.  Functions are provided that make it possible
+to read in plain ndjson files or compressed (@code{gz}) ndjson files and either
+validate the format of the records or create \"flat\" @code{data.table}
+structures from them.")
+    (license license:expat)))
-- 
cgit v1.2.3


From cb360afd66b8534b957a8fc9cbf87ce0f35f7e0c Mon Sep 17 00:00:00 2001
From: Lars-Dominik Braun <ldb@leibniz-psychology.org>
Date: Mon, 15 Mar 2021 10:10:46 +0100
Subject: gnu: Add r-streamr

* gnu/packages/cran.scm (r-streamr): New variable.
---
 gnu/packages/cran.scm | 26 ++++++++++++++++++++++++++
 1 file changed, 26 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 75c11c7af3..6bc6f77a8e 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -27615,3 +27615,29 @@ to read in plain ndjson files or compressed (@code{gz}) ndjson files and either
 validate the format of the records or create \"flat\" @code{data.table}
 structures from them.")
     (license license:expat)))
+
+(define-public r-streamr
+  (package
+    (name "r-streamr")
+    (version "0.4.5")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (cran-uri "streamR" version))
+        (sha256
+          (base32
+            "1clx3b0j2515r1nmnl6ki7qw5n54q3x2jvqv3zrc00kq71mlj7ix"))))
+    (properties `((upstream-name . "streamR")))
+    (build-system r-build-system)
+    (propagated-inputs
+      `(("r-ndjson" ,r-ndjson)
+        ("r-rcurl" ,r-rcurl)
+        ("r-rjson" ,r-rjson)))
+    (home-page
+      "https://cran.r-project.org/package=streamR")
+    (synopsis
+      "Access to Twitter Streaming API via R")
+    (description
+      "This package provides functions to access Twitter's filter, sample, and
+user streams, and to parse the output into data frames.")
+    (license license:gpl2)))
-- 
cgit v1.2.3


From 03af89bd9efaeac35490b75fffb598dde302df12 Mon Sep 17 00:00:00 2001
From: Lars-Dominik Braun <ldb@leibniz-psychology.org>
Date: Mon, 15 Mar 2021 10:13:07 +0100
Subject: gnu: Add r-readods.

* gnu/packages/cran.scm (r-readods): New variable.
---
 gnu/packages/cran.scm | 27 +++++++++++++++++++++++++++
 1 file changed, 27 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 6bc6f77a8e..b6ee33170d 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -27641,3 +27641,30 @@ structures from them.")
       "This package provides functions to access Twitter's filter, sample, and
 user streams, and to parse the output into data frames.")
     (license license:gpl2)))
+
+(define-public r-readods
+  (package
+    (name "r-readods")
+    (version "1.7.0")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (cran-uri "readODS" version))
+        (sha256
+          (base32
+            "1hi217ab7hp15jsbzi5ak57cqf8jn2rv78bnn74q72gn9mrfra7n"))))
+    (properties `((upstream-name . "readODS")))
+    (build-system r-build-system)
+    (propagated-inputs
+      `(("r-cellranger" ,r-cellranger)
+        ("r-readr" ,r-readr)
+        ("r-stringi" ,r-stringi)
+        ("r-xml2" ,r-xml2)))
+    (native-inputs `(("r-knitr" ,r-knitr)))
+    (home-page
+      "https://cran.r-project.org/package=readODS")
+    (synopsis "Read and Write ODS Files")
+    (description
+      "Import @dfn{OpenDocument Spreadsheet} (ODS) into R as a data frame.
+Also support writing data frame into ODS file.")
+    (license license:gpl3)))
-- 
cgit v1.2.3


From 52c70fb66ea82c8c4bbc555c361a42ebd839941c Mon Sep 17 00:00:00 2001
From: Lars-Dominik Braun <ldb@leibniz-psychology.org>
Date: Mon, 15 Mar 2021 10:19:00 +0100
Subject: gnu: Add r-qpdf.

Cannot add to (gnu packages pdf) due to circular module dependency.

* gnu/packages/cran.scm (r-qpdf): New variable.
---
 gnu/packages/cran.scm | 47 +++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 47 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index b6ee33170d..877396b996 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -91,6 +91,7 @@
   #:use-module (gnu packages networking)
   #:use-module (gnu packages node)
   #:use-module (gnu packages pcre)
+  #:use-module (gnu packages pdf)
   #:use-module (gnu packages perl)
   #:use-module (gnu packages pkg-config)
   #:use-module (gnu packages pulseaudio)  ;libsndfile
@@ -27668,3 +27669,49 @@ user streams, and to parse the output into data frames.")
       "Import @dfn{OpenDocument Spreadsheet} (ODS) into R as a data frame.
 Also support writing data frame into ODS file.")
     (license license:gpl3)))
+
+(define-public r-qpdf
+  (package
+    (name "r-qpdf")
+    (version "1.1")
+    (source
+     (origin
+      (method url-fetch)
+      (uri (cran-uri "qpdf" version))
+      (sha256
+       (base32
+        "03lnfncw8qd1fwfyqh1mjvnsjr3b63wxbah0wp5g7z7gba90dwbi"))
+      (modules '((guix build utils)))
+      (snippet
+       '(begin
+           ;; unvendor libqpdf
+          (delete-file-recursively "src/libqpdf")
+          (delete-file-recursively "src/include/qpdf")
+          #t))))
+    (properties `((upstream-name . "qpdf")))
+    (build-system r-build-system)
+    (arguments
+     '(#:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'configure
+           (lambda _
+             (setenv "EXTERNAL_QPDF" "1")
+             #t)))))
+    (inputs
+      `(("zlib" ,zlib)
+        ("qpdf" ,qpdf)))
+    (propagated-inputs
+      `(("r-askpass" ,r-askpass)
+        ("r-curl" ,r-curl)
+        ("r-rcpp" ,r-rcpp)))
+    (native-inputs `(("pkg-config" ,pkg-config)))
+    (home-page "https://github.com/ropensci/qpdf")
+    (synopsis
+      "Split, Combine and Compress PDF Files")
+    (description
+      "Content-preserving transformations transformations of PDF files such as
+split, combine, and compress.  This package interfaces directly to the
+@code{qpdf} C++ API and does not require any command line utilities.  Note that
+@code{qpdf} does not read actual content from PDF files: to extract text and
+data you need the @code{pdftools} package.")
+    (license license:asl2.0)))
-- 
cgit v1.2.3


From 275b7987c0baf66bed2c64c044975b1c3719b22b Mon Sep 17 00:00:00 2001
From: Lars-Dominik Braun <ldb@leibniz-psychology.org>
Date: Mon, 15 Mar 2021 10:21:23 +0100
Subject: gnu: Add r-pdftools.

* gnu/packages/cran.scm (r-pdftools): New variable.
---
 gnu/packages/cran.scm | 30 ++++++++++++++++++++++++++++++
 1 file changed, 30 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 877396b996..f7d170ef63 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -27715,3 +27715,33 @@ split, combine, and compress.  This package interfaces directly to the
 @code{qpdf} does not read actual content from PDF files: to extract text and
 data you need the @code{pdftools} package.")
     (license license:asl2.0)))
+
+(define-public r-pdftools
+  (package
+    (name "r-pdftools")
+    (version "2.3.1")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (cran-uri "pdftools" version))
+        (sha256
+          (base32
+            "01i5g2mjkshis0zlm7lrvi7kkzl4dn3if1hzwkgzf9n2mi33ndsx"))))
+    (properties `((upstream-name . "pdftools")))
+    (build-system r-build-system)
+    (inputs
+      `(("zlib" ,zlib)
+        ("poppler" ,poppler)))
+    (propagated-inputs
+      `(("r-qpdf" ,r-qpdf) ("r-rcpp" ,r-rcpp)))
+    (native-inputs `(("pkg-config" ,pkg-config)))
+    (home-page
+      "https://docs.ropensci.org/pdftools/")
+    (synopsis
+      "Text Extraction, Rendering and Converting of PDF Documents")
+    (description
+      "Utilities based on @code{libpoppler} for extracting text, fonts,
+attachments and metadata from a PDF file.  Also supports high quality rendering
+of PDF documents into PNG, JPEG, TIFF format, or into raw bitmap vectors for
+further processing in R.")
+    (license license:expat)))
-- 
cgit v1.2.3


From 6f688733b5597d7f2c9727d06a63f69a4329e1a2 Mon Sep 17 00:00:00 2001
From: Lars-Dominik Braun <ldb@leibniz-psychology.org>
Date: Mon, 15 Mar 2021 10:24:07 +0100
Subject: gnu: Add r-antiword.

* gnu/packages/cran.scm (r-antiword): New variable.
---
 gnu/packages/cran.scm | 42 ++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 42 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index f7d170ef63..6d95df6e62 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -100,6 +100,7 @@
   #:use-module (gnu packages sqlite)
   #:use-module (gnu packages statistics)
   #:use-module (gnu packages tcl)
+  #:use-module (gnu packages textutils)
   #:use-module (gnu packages tls)
   #:use-module (gnu packages version-control)
   #:use-module (gnu packages web)
@@ -27745,3 +27746,44 @@ attachments and metadata from a PDF file.  Also supports high quality rendering
 of PDF documents into PNG, JPEG, TIFF format, or into raw bitmap vectors for
 further processing in R.")
     (license license:expat)))
+
+(define-public r-antiword
+  (package
+    (name "r-antiword")
+    (version "1.3")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (cran-uri "antiword" version))
+        (sha256
+          (base32
+            "034znb0g9wwb8gi1r3z75v3sbb4mh83qrc4y8mbfx5lbgh8zhj6j"))
+      (modules '((guix build utils)))
+      (snippet
+       '(begin
+           ;; unvendor libantiword
+          (delete-file-recursively "src")
+          #t))))
+    (properties `((upstream-name . "antiword")))
+    (build-system r-build-system)
+    (arguments
+     '(#:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'use-system-antiword
+           (lambda* (#:key inputs #:allow-other-keys)
+            (substitute* "R/antiword.R"
+             (("system.file\\(\"bin\", package = \"antiword\"\\)")
+              (string-append "\"" (assoc-ref inputs "antiword") "/bin\"")))
+             #t)))))
+    (inputs `(("antiword" ,antiword)))
+    (propagated-inputs `(("r-sys" ,r-sys)))
+    (home-page
+      "https://github.com/ropensci/antiword#readme")
+    (synopsis
+      "Extract Text from Microsoft Word Documents")
+    (description
+      "Wraps the @code{AntiWord} utility to extract text from Microsoft Word
+documents.  The utility only supports the old @code{doc} format, not the new
+xml based @code{docx} format.  Use the @code{xml2} package to read the
+latter.")
+    (license license:gpl2)))
-- 
cgit v1.2.3


From 5d719fe6087a5412a0b17d0e0c113488b3329c32 Mon Sep 17 00:00:00 2001
From: Lars-Dominik Braun <ldb@leibniz-psychology.org>
Date: Mon, 15 Mar 2021 10:29:26 +0100
Subject: gnu: Add r-readtext.

* gnu/packages/cran.scm (r-readtext): New variable.
---
 gnu/packages/cran.scm | 39 +++++++++++++++++++++++++++++++++++++++
 1 file changed, 39 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 6d95df6e62..24eb22e638 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -27787,3 +27787,42 @@ documents.  The utility only supports the old @code{doc} format, not the new
 xml based @code{docx} format.  Use the @code{xml2} package to read the
 latter.")
     (license license:gpl2)))
+
+(define-public r-readtext
+  (package
+    (name "r-readtext")
+    (version "0.80")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (cran-uri "readtext" version))
+        (sha256
+          (base32
+            "0q8ajnp99fwvh14ppkm2z3gqwdwmjrvxvsfb4q7ad0dhkqric05y"))))
+    (properties `((upstream-name . "readtext")))
+    (build-system r-build-system)
+    (propagated-inputs
+      `(("r-antiword" ,r-antiword)
+        ("r-data-table" ,r-data-table)
+        ("r-digest" ,r-digest)
+        ("r-httr" ,r-httr)
+        ("r-jsonlite" ,r-jsonlite)
+        ("r-pdftools" ,r-pdftools)
+        ("r-readods" ,r-readods)
+        ("r-readxl" ,r-readxl)
+        ("r-streamr" ,r-streamr)
+        ("r-stringi" ,r-stringi)
+        ("r-striprtf" ,r-striprtf)
+        ("r-tibble" ,r-tibble)
+        ("r-xml2" ,r-xml2)))
+    (native-inputs `(("r-knitr" ,r-knitr)))
+    (home-page
+      "https://github.com/quanteda/readtext")
+    (synopsis
+      "Import and Handling for Plain and Formatted Text Files")
+    (description
+      "This package provides functions for importing and handling text files
+and formatted text files with additional meta-data, such including @code{.csv},
+@code{.tab}, @code{.json}, @code{.xml}, @code{.html}, @code{.pdf}, @code{.doc},
+@code{.docx}, @code{.rtf}, @code{.xls}, @code{.xlsx}, and others.")
+    (license license:gpl3)))
-- 
cgit v1.2.3


From 5ce5e49c10b932743b730801632c5212ea8f7ed6 Mon Sep 17 00:00:00 2001
From: Lars-Dominik Braun <ldb@leibniz-psychology.org>
Date: Mon, 15 Mar 2021 10:31:20 +0100
Subject: gnu: Add r-packcircles.

* gnu/packages/cran.scm (r-packcircles): New variable.
---
 gnu/packages/cran.scm | 22 ++++++++++++++++++++++
 1 file changed, 22 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 24eb22e638..89a7c4f0cc 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -27826,3 +27826,25 @@ and formatted text files with additional meta-data, such including @code{.csv},
 @code{.tab}, @code{.json}, @code{.xml}, @code{.html}, @code{.pdf}, @code{.doc},
 @code{.docx}, @code{.rtf}, @code{.xls}, @code{.xlsx}, and others.")
     (license license:gpl3)))
+
+(define-public r-packcircles
+  (package
+    (name "r-packcircles")
+    (version "0.3.4")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (cran-uri "packcircles" version))
+        (sha256
+          (base32
+            "05pv5c4k4njkr0xw6i6ksiy34hcyx2lbiqpv5gxw81yrkm0rxfyk"))))
+    (properties `((upstream-name . "packcircles")))
+    (build-system r-build-system)
+    (propagated-inputs `(("r-rcpp" ,r-rcpp)))
+    (native-inputs `(("r-knitr" ,r-knitr)))
+    (home-page
+      "https://github.com/mbedward/packcircles")
+    (synopsis "Circle Packing")
+    (description
+      "Algorithms to find arrangements of non-overlapping circles.")
+    (license license:expat)))
-- 
cgit v1.2.3


From a1dd43e4cd35b6028beb1515960661ba0476dc61 Mon Sep 17 00:00:00 2001
From: Lars-Dominik Braun <ldb@leibniz-psychology.org>
Date: Mon, 15 Mar 2021 10:35:20 +0100
Subject: gnu: Add r-lwgeom.

* gnu/packages/cran.scm (r-lwgeom): New variable.
---
 gnu/packages/cran.scm | 31 +++++++++++++++++++++++++++++++
 1 file changed, 31 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 89a7c4f0cc..39d11dd8ee 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -27848,3 +27848,34 @@ and formatted text files with additional meta-data, such including @code{.csv},
     (description
       "Algorithms to find arrangements of non-overlapping circles.")
     (license license:expat)))
+
+;; Cannot unbundle liblwgeom, because PostGIS does not support building it on
+;; its own.
+(define-public r-lwgeom
+  (package
+    (name "r-lwgeom")
+    (version "0.2-5")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (cran-uri "lwgeom" version))
+        (sha256
+          (base32
+            "0byhjqa2acns8mznl1ngnfygxxxyszvnq66qfg0smhhhdkwr67aa"))))
+    (properties `((upstream-name . "lwgeom")))
+    (build-system r-build-system)
+    (inputs `(("geos" ,geos) ("proj" ,proj) ("sqlite" ,sqlite)))
+    (propagated-inputs
+      `(("r-rcpp" ,r-rcpp)
+        ("r-sf" ,r-sf)
+        ("r-units" ,r-units)))
+    (native-inputs `(("pkg-config" ,pkg-config)))
+    (home-page
+      "https://github.com/r-spatial/lwgeom/")
+    (synopsis
+      "Bindings to Selected 'liblwgeom' Functions for Simple Features")
+    (description
+      "Access to selected functions found in
+@url{https://github.com/postgis/postgis/tree/master/liblwgeom,liblwgeom}, the
+light-weight geometry library used by @url{http://postgis.net/,PostGIS}.")
+    (license license:gpl2)))
-- 
cgit v1.2.3


From 82344f59363530a092f4bbaca809820b2077b5fe Mon Sep 17 00:00:00 2001
From: Lars-Dominik Braun <ldb@leibniz-psychology.org>
Date: Mon, 15 Mar 2021 10:37:18 +0100
Subject: gnu: Add r-stars.

* gnu/packages/cran.scm (r-stars): New variable.
---
 gnu/packages/cran.scm | 30 ++++++++++++++++++++++++++++++
 1 file changed, 30 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 39d11dd8ee..3581d51ee0 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -27879,3 +27879,33 @@ and formatted text files with additional meta-data, such including @code{.csv},
 @url{https://github.com/postgis/postgis/tree/master/liblwgeom,liblwgeom}, the
 light-weight geometry library used by @url{http://postgis.net/,PostGIS}.")
     (license license:gpl2)))
+
+(define-public r-stars
+  (package
+    (name "r-stars")
+    (version "0.5-1")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (cran-uri "stars" version))
+        (sha256
+          (base32
+            "0ybk899rc0rpf2cv5kwk78fvis5xnr255hfcy5khdxsxdqgl0m9j"))))
+    (properties `((upstream-name . "stars")))
+    (build-system r-build-system)
+    (propagated-inputs
+      `(("r-abind" ,r-abind)
+        ("r-classint" ,r-classint)
+        ("r-lwgeom" ,r-lwgeom)
+        ("r-rlang" ,r-rlang)
+        ("r-sf" ,r-sf)
+        ("r-units" ,r-units)))
+    (native-inputs `(("r-knitr" ,r-knitr)))
+    (home-page "https://r-spatial.github.io/stars/")
+    (synopsis
+      "Spatiotemporal Arrays, Raster and Vector Data Cubes")
+    (description
+      "Reading, manipulating, writing and plotting spatiotemporal arrays
+(raster and vector data cubes) in @code{R}, using @code{GDAL} bindings provided
+by @code{sf}, and @code{NetCDF} bindings by @code{ncmeta} and @code{RNetCDF}.")
+    (license license:asl2.0)))
-- 
cgit v1.2.3


From 3095255b7bdb194479dbc58d6d51dff752b3352f Mon Sep 17 00:00:00 2001
From: Lars-Dominik Braun <ldb@leibniz-psychology.org>
Date: Mon, 15 Mar 2021 10:38:48 +0100
Subject: gnu: Add r-tmaptools.

* gnu/packages/cran.scm (r-tmaptools): New variable.
---
 gnu/packages/cran.scm | 32 ++++++++++++++++++++++++++++++++
 1 file changed, 32 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 3581d51ee0..a539042a24 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -27909,3 +27909,35 @@ light-weight geometry library used by @url{http://postgis.net/,PostGIS}.")
 (raster and vector data cubes) in @code{R}, using @code{GDAL} bindings provided
 by @code{sf}, and @code{NetCDF} bindings by @code{ncmeta} and @code{RNetCDF}.")
     (license license:asl2.0)))
+
+(define-public r-tmaptools
+  (package
+    (name "r-tmaptools")
+    (version "3.1-1")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (cran-uri "tmaptools" version))
+        (sha256
+          (base32
+            "0bal3czrdr93qig8s5cf5szld5vjbbks67rismfhlkmlgw6wp2gx"))))
+    (properties `((upstream-name . "tmaptools")))
+    (build-system r-build-system)
+    (propagated-inputs
+      `(("r-dichromat" ,r-dichromat)
+        ("r-lwgeom" ,r-lwgeom)
+        ("r-magrittr" ,r-magrittr)
+        ("r-rcolorbrewer" ,r-rcolorbrewer)
+        ("r-sf" ,r-sf)
+        ("r-stars" ,r-stars)
+        ("r-units" ,r-units)
+        ("r-viridislite" ,r-viridislite)
+        ("r-xml" ,r-xml)))
+    (home-page
+      "https://github.com/mtennekes/tmaptools")
+    (synopsis "Thematic Map Tools")
+    (description
+      "Set of tools for reading and processing spatial data.  The aim is to
+supply the workflow to create thematic maps.  This package also facilitates
+@code{tmap}, the package for visualizing thematic maps.")
+    (license license:gpl3)))
-- 
cgit v1.2.3


From 83b6d7a33e559b688f34822ec7ef28d63ab28924 Mon Sep 17 00:00:00 2001
From: Lars-Dominik Braun <ldb@leibniz-psychology.org>
Date: Mon, 15 Mar 2021 10:40:21 +0100
Subject: gnu: Add r-rworldmap.

* gnu/packages/cran.scm (r-rworldmap): New variable.
---
 gnu/packages/cran.scm | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index a539042a24..bd3c040d1d 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -27941,3 +27941,27 @@ by @code{sf}, and @code{NetCDF} bindings by @code{ncmeta} and @code{RNetCDF}.")
 supply the workflow to create thematic maps.  This package also facilitates
 @code{tmap}, the package for visualizing thematic maps.")
     (license license:gpl3)))
+
+(define-public r-rworldmap
+  (package
+    (name "r-rworldmap")
+    (version "1.3-6")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (cran-uri "rworldmap" version))
+        (sha256
+          (base32
+            "1q1h0n9qr0m5pdx10swrh9ddsvdj8kv5nqngrf3lnx9rg9iwivjk"))))
+    (properties `((upstream-name . "rworldmap")))
+    (build-system r-build-system)
+    (propagated-inputs
+      `(("r-fields" ,r-fields)
+        ("r-maptools" ,r-maptools)
+        ("r-sp" ,r-sp)))
+    (home-page
+      "https://github.com/AndySouth/rworldmap/")
+    (synopsis "Mapping Global Data")
+    (description
+      "Enables mapping of country level and gridded user datasets.")
+    (license license:gpl2+)))
-- 
cgit v1.2.3


From 181e3c01282f9260a5ff868d15369521bedb3583 Mon Sep 17 00:00:00 2001
From: Lars-Dominik Braun <ldb@leibniz-psychology.org>
Date: Mon, 15 Mar 2021 10:42:29 +0100
Subject: gnu: Add r-rtweet.

* gnu/packages/cran.scm (r-rtweet): New variable.
---
 gnu/packages/cran.scm | 31 +++++++++++++++++++++++++++++++
 1 file changed, 31 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index bd3c040d1d..37a13b4c1a 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -27965,3 +27965,34 @@ supply the workflow to create thematic maps.  This package also facilitates
     (description
       "Enables mapping of country level and gridded user datasets.")
     (license license:gpl2+)))
+
+(define-public r-rtweet
+  (package
+    (name "r-rtweet")
+    (version "0.7.0")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (cran-uri "rtweet" version))
+        (sha256
+          (base32
+            "05pbvxm2vmf6935b9s6663k3aifnkr3m52wh2jvnplmrwyrfpn9n"))))
+    (properties `((upstream-name . "rtweet")))
+    (build-system r-build-system)
+    (propagated-inputs
+      `(("r-httpuv" ,r-httpuv)
+        ("r-httr" ,r-httr)
+        ("r-jsonlite" ,r-jsonlite)
+        ("r-magrittr" ,r-magrittr)
+        ("r-progress" ,r-progress)
+        ("r-rcpp" ,r-rcpp)
+        ("r-tibble" ,r-tibble)))
+    (native-inputs `(("r-knitr" ,r-knitr)))
+    (home-page
+      "https://docs.ropensci.org/rtweet/")
+    (synopsis "Collecting Twitter Data")
+    (description
+      "An implementation of calls designed to collect and organize Twitter data
+via @url{https://developer.twitter.com/en/docs,Twitter's REST and stream
+Application Program Interfaces (API)}.")
+    (license license:expat)))
-- 
cgit v1.2.3


From 32603dbba9a0ab03301b67591927f98fd1f7b2ba Mon Sep 17 00:00:00 2001
From: Lars-Dominik Braun <ldb@leibniz-psychology.org>
Date: Mon, 15 Mar 2021 10:46:39 +0100
Subject: gnu: Add r-intervals.

* gnu/packages/cran.scm (r-intervals): New variable.
---
 gnu/packages/cran.scm | 20 ++++++++++++++++++++
 1 file changed, 20 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 37a13b4c1a..2fa16753d9 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -27996,3 +27996,23 @@ supply the workflow to create thematic maps.  This package also facilitates
 via @url{https://developer.twitter.com/en/docs,Twitter's REST and stream
 Application Program Interfaces (API)}.")
     (license license:expat)))
+
+(define-public r-intervals
+  (package
+    (name "r-intervals")
+    (version "0.15.2")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (cran-uri "intervals" version))
+        (sha256
+          (base32
+            "0mvwfwc03ifb30a3dzbmkv9adwqb8ajxhcw24d8xip8px063plhb"))))
+    (properties `((upstream-name . "intervals")))
+    (build-system r-build-system)
+    (home-page "https://github.com/edzer/intervals")
+    (synopsis
+      "Tools for Working with Points and Intervals")
+    (description
+      "Tools for working with and comparing sets of points and intervals.")
+    (license license:artistic2.0)))
-- 
cgit v1.2.3


From 20fb147c9abbd60bea1c8d9e54b11b2b95e69970 Mon Sep 17 00:00:00 2001
From: Lars-Dominik Braun <ldb@leibniz-psychology.org>
Date: Mon, 15 Mar 2021 10:47:48 +0100
Subject: gnu: Add r-eyelinker.

* gnu/packages/cran.scm (r-eyelinker): New variable.
---
 gnu/packages/cran.scm | 29 +++++++++++++++++++++++++++++
 1 file changed, 29 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 2fa16753d9..66fd2c733d 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -28016,3 +28016,32 @@ Application Program Interfaces (API)}.")
     (description
       "Tools for working with and comparing sets of points and intervals.")
     (license license:artistic2.0)))
+
+(define-public r-eyelinker
+  (package
+    (name "r-eyelinker")
+    (version "0.2.0")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (cran-uri "eyelinker" version))
+        (sha256
+          (base32
+            "14rfcdxad9iazwd46q6bm8gg1ryh6s8kf7arj00hhb7xz3gvk9c2"))))
+    (properties `((upstream-name . "eyelinker")))
+    (build-system r-build-system)
+    (propagated-inputs
+      `(("r-intervals" ,r-intervals)
+        ("r-readr" ,r-readr)
+        ("r-stringi" ,r-stringi)
+        ("r-stringr" ,r-stringr)
+        ("r-tibble" ,r-tibble)))
+    (native-inputs `(("r-knitr" ,r-knitr)))
+    (home-page
+      "https://github.com/a-hurst/eyelinker")
+    (synopsis
+      "Import ASC Files from EyeLink Eye Trackers")
+    (description
+      "Imports plain-text ASC data files from EyeLink eye trackers into
+(relatively) tidy data frames for analysis and visualization.")
+    (license license:gpl3)))
-- 
cgit v1.2.3


From ca3913d1f8d0582236989e516dc61ed38eec6ed9 Mon Sep 17 00:00:00 2001
From: Lars-Dominik Braun <ldb@leibniz-psychology.org>
Date: Mon, 15 Mar 2021 10:49:50 +0100
Subject: gnu: Add r-btm.

* gnu/packages/cran.scm (r-btm): New variable.
---
 gnu/packages/cran.scm | 31 +++++++++++++++++++++++++++++++
 1 file changed, 31 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 66fd2c733d..91cf7c550d 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -28045,3 +28045,34 @@ Application Program Interfaces (API)}.")
       "Imports plain-text ASC data files from EyeLink eye trackers into
 (relatively) tidy data frames for analysis and visualization.")
     (license license:gpl3)))
+
+(define-public r-btm
+  (package
+    (name "r-btm")
+    (version "0.3.5")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (cran-uri "BTM" version))
+        (sha256
+          (base32
+            "1x6bncb7r97z8bdyxnn2frdi9kyawfy6c2041mv9f42zdrfzm6jb"))))
+    (properties `((upstream-name . "BTM")))
+    (build-system r-build-system)
+    (propagated-inputs `(("r-rcpp" ,r-rcpp)))
+    (home-page "https://github.com/bnosac/BTM")
+    (synopsis "Biterm Topic Models for Short Text")
+    (description
+      "Biterm Topic Models find topics in collections of short texts.  It is a
+word co-occurrence based topic model that learns topics by modeling word-word
+co-occurrences patterns which are called biterms.  This in contrast to
+traditional topic models like Latent Dirichlet Allocation and Probabilistic
+Latent Semantic Analysis which are word-document co-occurrence topic models.  A
+biterm consists of two words co-occurring in the same short text window.  This
+context window can for example be a twitter message, a short answer on a
+survey, a sentence of a text or a document identifier.  The techniques are
+explained in detail in the paper 'A Biterm Topic Model For Short Text' by
+Xiaohui Yan, Jiafeng Guo, Yanyan Lan, Xueqi Cheng (2013)
+@url{https://github.com/xiaohuiyan/xiaohuiyan.github.io/blob/master/paper/\
+BTM-WWW13.pdf}.")
+    (license license:asl2.0)))
-- 
cgit v1.2.3


From c3163fe6b4265d8626f1794c40abdfab39721104 Mon Sep 17 00:00:00 2001
From: Lars-Dominik Braun <ldb@leibniz-psychology.org>
Date: Mon, 15 Mar 2021 10:51:41 +0100
Subject: gnu: Add r-textplot.

* gnu/packages/cran.scm (r-textplot): New variable.
---
 gnu/packages/cran.scm | 27 +++++++++++++++++++++++++++
 1 file changed, 27 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 91cf7c550d..5854ff6031 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -28076,3 +28076,30 @@ Xiaohui Yan, Jiafeng Guo, Yanyan Lan, Xueqi Cheng (2013)
 @url{https://github.com/xiaohuiyan/xiaohuiyan.github.io/blob/master/paper/\
 BTM-WWW13.pdf}.")
     (license license:asl2.0)))
+
+(define-public r-textplot
+  (package
+    (name "r-textplot")
+    (version "0.1.4")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (cran-uri "textplot" version))
+        (sha256
+          (base32
+            "1sgkndy2cxk8c76h8hwajn6f78w5jj2n8vsmaxh9kj931crzn8cy"))))
+    (properties `((upstream-name . "textplot")))
+    (build-system r-build-system)
+    (propagated-inputs
+      `(("r-data-table" ,r-data-table)
+        ("r-lattice" ,r-lattice)
+        ("r-matrix" ,r-matrix)))
+    (native-inputs `(("r-knitr" ,r-knitr)))
+    (home-page "https://github.com/bnosac/textplot")
+    (synopsis "Text Plots")
+    (description
+      "Visualise complex relations in texts.  This is done by providing
+functionalities for displaying text co-occurrence networks, text correlation
+networks, dependency relationships as well as text clustering.  Feel free to
+join the effort of providing interesting text visualisations.")
+    (license license:gpl2)))
-- 
cgit v1.2.3


From 3eeb7dbf04b5ee3120b3ebcf264d54a56ad934e2 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 15 Mar 2021 12:15:18 +0100
Subject: gnu: r-gkmsvm: Move back to (gnu packages cran).

* gnu/packages/bioconductor.scm (r-gkmsvm): Move this variable from here...
* gnu/packages/cran.scm (r-gkmsvm): ...to here.
---
 gnu/packages/bioconductor.scm | 27 ---------------------------
 gnu/packages/cran.scm         | 26 ++++++++++++++++++++++++++
 2 files changed, 26 insertions(+), 27 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 526c2eecbb..4f8e0562b1 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -4042,33 +4042,6 @@ visualising metrics relative to experiment run time or spatially over the
 surface of a flowcell.")
     (license license:expat)))
 
-;; This is a CRAN package, but it depends on packages from Bioconductor.
-(define-public r-gkmsvm
-  (package
-    (name "r-gkmsvm")
-    (version "0.81.0")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (cran-uri "gkmSVM" version))
-       (sha256
-        (base32
-         "119g5rhc7ffyviz04r04aj5z1g6abnj3ddd01g7db505sdr6lapj"))))
-    (properties `((upstream-name . "gkmSVM")))
-    (build-system r-build-system)
-    (propagated-inputs
-     `(("r-kernlab" ,r-kernlab)
-       ("r-rcpp" ,r-rcpp)
-       ("r-rocr" ,r-rocr)
-       ("r-seqinr" ,r-seqinr)))
-    (home-page "https://cran.r-project.org/web/packages/gkmSVM")
-    (synopsis "Gapped-kmer support vector machine")
-    (description
-     "This R package provides tools for training gapped-kmer SVM classifiers
-for DNA and protein sequences.  This package supports several sequence
-kernels, including: gkmSVM, kmer-SVM, mismatch kernel and wildcard kernel.")
-    (license license:gpl2+)))
-
 ;; This is a CRAN package, but it depends on multtest from Bioconductor.
 (define-public r-mutoss
   (package
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 5854ff6031..30c346d0c1 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -16471,6 +16471,32 @@ visualizations and provides the same flexible approach to building up plots
 layer by layer.")
     (license license:gpl3)))
 
+(define-public r-gkmsvm
+  (package
+    (name "r-gkmsvm")
+    (version "0.81.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "gkmSVM" version))
+       (sha256
+        (base32
+         "119g5rhc7ffyviz04r04aj5z1g6abnj3ddd01g7db505sdr6lapj"))))
+    (properties `((upstream-name . "gkmSVM")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-kernlab" ,r-kernlab)
+       ("r-rcpp" ,r-rcpp)
+       ("r-rocr" ,r-rocr)
+       ("r-seqinr" ,r-seqinr)))
+    (home-page "https://cran.r-project.org/web/packages/gkmSVM")
+    (synopsis "Gapped-kmer support vector machine")
+    (description
+     "This R package provides tools for training gapped-kmer SVM classifiers
+for DNA and protein sequences.  This package supports several sequence
+kernels, including: gkmSVM, kmer-SVM, mismatch kernel and wildcard kernel.")
+    (license license:gpl2+)))
+
 (define-public r-varselrf
   (package
     (name "r-varselrf")
-- 
cgit v1.2.3


From 78373e394dc1d0e04d76c491767ffa527920f3b3 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 15 Mar 2021 13:36:57 +0100
Subject: gnu: Add r-spatstat-sparse.

* gnu/packages/cran.scm (r-spatstat-sparse): New variable.
---
 gnu/packages/cran.scm | 27 +++++++++++++++++++++++++++
 1 file changed, 27 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 30c346d0c1..6ae746a093 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -24809,6 +24809,33 @@ diagonals.  This package allows you to compute the tensor product of arrays.")
 which may also be useful for other purposes.")
     (license license:gpl2+)))
 
+(define-public r-spatstat-sparse
+  (package
+    (name "r-spatstat-sparse")
+    (version "1.2-1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "spatstat.sparse" version))
+       (sha256
+        (base32
+         "1w312q7gxzchigxxzk9akscdsz66j5085lgjryamschjgp4f8yk2"))))
+    (properties
+     `((upstream-name . "spatstat.sparse")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-abind" ,r-abind)
+       ("r-matrix" ,r-matrix)
+       ("r-spatstat-utils" ,r-spatstat-utils)
+       ("r-tensor" ,r-tensor)))
+    (home-page "http://spatstat.org/")
+    (synopsis "Sparse three-dimensional arrays and linear algebra utilities")
+    (description
+     "This package defines sparse three-dimensional arrays and supports
+standard operations on them.  The package also includes utility functions for
+matrix calculations that are common in statistics, such as quadratic forms.")
+    (license license:gpl2+)))
+
 (define-public r-spatstat-data
   (package
     (name "r-spatstat-data")
-- 
cgit v1.2.3


From ddfe3f77a9354c166bdb6b09ae87e62a4c533eba Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 15 Mar 2021 13:39:00 +0100
Subject: gnu: Add r-spatstat-geom.

* gnu/packages/cran.scm (r-spatstat-geom): New variable.
---
 gnu/packages/cran.scm | 27 +++++++++++++++++++++++++++
 1 file changed, 27 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 6ae746a093..c70c734a8c 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -24859,6 +24859,33 @@ matrix calculations that are common in statistics, such as quadratic forms.")
 package.")
     (license license:gpl2+)))
 
+(define-public r-spatstat-geom
+  (package
+    (name "r-spatstat-geom")
+    (version "1.65-5")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "spatstat.geom" version))
+       (sha256
+        (base32
+         "0g0m5b3nbzpyblbp77n56k6aiw3fn23jkk72h9fhqlg1ydn2fzpk"))))
+    (properties `((upstream-name . "spatstat.geom")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-deldir" ,r-deldir)
+       ("r-polyclip" ,r-polyclip)
+       ("r-spatstat-data" ,r-spatstat-data)
+       ("r-spatstat-sparse" ,r-spatstat-sparse)
+       ("r-spatstat-utils" ,r-spatstat-utils)))
+    (home-page "http://spatstat.org/")
+    (synopsis "Geometrical functionality of the spatstat package")
+    (description
+     "This is a subset of the original spatstat package, containing the
+user-level code from spatstat which performs geometrical operations, except
+for the geometry of linear networks.")
+    (license license:gpl2+)))
+
 (define-public r-spatstat
   (package
     (name "r-spatstat")
-- 
cgit v1.2.3


From 3ebae705f993098a688eff88c07e75e52f5e67a6 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 15 Mar 2021 13:39:25 +0100
Subject: gnu: Add r-spatstat-core.

* gnu/packages/cran.scm (r-spatstat-core): New variable.
---
 gnu/packages/cran.scm | 32 ++++++++++++++++++++++++++++++++
 1 file changed, 32 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index c70c734a8c..5bc47ef53b 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -24886,6 +24886,38 @@ user-level code from spatstat which performs geometrical operations, except
 for the geometry of linear networks.")
     (license license:gpl2+)))
 
+(define-public r-spatstat-core
+  (package
+    (name "r-spatstat-core")
+    (version "1.65-5")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "spatstat.core" version))
+       (sha256
+        (base32
+         "0wq61sd53hwyk3fzjdc2prrr66n67zbwb5i3ii7kvyhfwx0xikm3"))))
+    (properties `((upstream-name . "spatstat.core")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-abind" ,r-abind)
+       ("r-goftest" ,r-goftest)
+       ("r-matrix" ,r-matrix)
+       ("r-mgcv" ,r-mgcv)
+       ("r-nlme" ,r-nlme)
+       ("r-rpart" ,r-rpart)
+       ("r-spatstat-data" ,r-spatstat-data)
+       ("r-spatstat-geom" ,r-spatstat-geom)
+       ("r-spatstat-sparse" ,r-spatstat-sparse)
+       ("r-spatstat-utils" ,r-spatstat-utils)
+       ("r-tensor" ,r-tensor)))
+    (home-page "http://spatstat.org/")
+    (synopsis "Core functionality of the spatstat package")
+    (description
+     "This is a subset of the original spatstat package, containing all of the
+user-level code from spatstat, except for the code for linear networks.")
+    (license license:gpl2+)))
+
 (define-public r-spatstat
   (package
     (name "r-spatstat")
-- 
cgit v1.2.3


From e1240e22f5b5029f2eab4ebc295e15336eb1927e Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 15 Mar 2021 13:39:48 +0100
Subject: gnu: Add r-spatstat-linnet.

* gnu/packages/cran.scm (r-spatstat-linnet): New variable.
---
 gnu/packages/cran.scm | 27 +++++++++++++++++++++++++++
 1 file changed, 27 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 5bc47ef53b..7cb8ef2dda 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -24918,6 +24918,33 @@ for the geometry of linear networks.")
 user-level code from spatstat, except for the code for linear networks.")
     (license license:gpl2+)))
 
+(define-public r-spatstat-linnet
+  (package
+    (name "r-spatstat-linnet")
+    (version "1.65-3")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "spatstat.linnet" version))
+       (sha256
+        (base32
+         "1y088r26h5yv006ydgcb4iwpvnc7ql857gky0hbi7xqqciqr8wdv"))))
+    (properties
+     `((upstream-name . "spatstat.linnet")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-matrix" ,r-matrix)
+       ("r-spatstat-core" ,r-spatstat-core)
+       ("r-spatstat-data" ,r-spatstat-data)
+       ("r-spatstat-geom" ,r-spatstat-geom)
+       ("r-spatstat-utils" ,r-spatstat-utils)))
+    (home-page "http://spatstat.org/")
+    (synopsis "Linear networks functionality of the spatstat package")
+    (description
+     "This is a subset of the spatstat package, containing its functionality
+for spatial data on a linear network.")
+    (license license:gpl2+)))
+
 (define-public r-spatstat
   (package
     (name "r-spatstat")
-- 
cgit v1.2.3


From 7bdef3789d1fa291ab00184150076f0275d2cd32 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 15 Mar 2021 13:41:02 +0100
Subject: gnu: r-zoo: Update to 1.8-9.

* gnu/packages/cran.scm (r-zoo): Update to 1.8-9.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 7cb8ef2dda..f2bee30f7c 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -343,13 +343,13 @@ the system clipboards.")
 (define-public r-zoo
   (package
     (name "r-zoo")
-    (version "1.8-8")
+    (version "1.8-9")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "zoo" version))
               (sha256
                (base32
-                "1rrw431jwaxd9xljp73f15rhcxvwc0xlyrmr0ghi5fj7a03c932f"))))
+                "18vjywalpgzqyk66gajb8x1yp8avdaaf11ykynld9fd8cy82bgmp"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-lattice" ,r-lattice)))
-- 
cgit v1.2.3


From 172da782db4cc161af05df2a82d057d53bb6fff1 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 15 Mar 2021 13:41:08 +0100
Subject: gnu: r-rvest: Update to 1.0.0.

* gnu/packages/cran.scm (r-rvest): Update to 1.0.0.
[propagated-inputs]: Add r-lifecycle, r-rlang, and r-tibble.
---
 gnu/packages/cran.scm | 7 +++++--
 1 file changed, 5 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index f2bee30f7c..6ef25cb61e 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -873,18 +873,21 @@ single step.")
 (define-public r-rvest
   (package
     (name "r-rvest")
-    (version "0.3.6")
+    (version "1.0.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "rvest" version))
        (sha256
-        (base32 "1yh2p429a0zr8pqmlw5rzf6m797j20j5w6xwxlqq0wrdbnif6bka"))))
+        (base32 "04spcv6nxlmx5bxncq0vybfqrs8jgjamzyrn6wmkdcwii8jvyn53"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-httr" ,r-httr)
+       ("r-lifecycle" ,r-lifecycle)
        ("r-magrittr" ,r-magrittr)
+       ("r-rlang" ,r-rlang)
        ("r-selectr" ,r-selectr)
+       ("r-tibble" ,r-tibble)
        ("r-xml2" ,r-xml2)))
     (native-inputs
      `(("r-knitr" ,r-knitr)))
-- 
cgit v1.2.3


From bfa09fd922b25e3c3793d9242bcaac2107c98a16 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 15 Mar 2021 13:41:12 +0100
Subject: gnu: r-lava: Update to 1.6.9.

* gnu/packages/cran.scm (r-lava): Update to 1.6.9.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 6ef25cb61e..5df2bbf011 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -3891,14 +3891,14 @@ available in a vignette.")
 (define-public r-lava
   (package
     (name "r-lava")
-    (version "1.6.8.1")
+    (version "1.6.9")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "lava" version))
        (sha256
         (base32
-         "1yiz8y3jhxkszgz9m9fialp9r27hy97xh0imfvs8ziv7dk43y93d"))))
+         "07difbrz8zmvdyns63958v0zw4hyv48956mcww8zh7064a564k83"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-numderiv" ,r-numderiv)
-- 
cgit v1.2.3


From 70257ad2c03a6d7dc81418f9b0a0f8ed20c8b86a Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 15 Mar 2021 13:41:15 +0100
Subject: gnu: r-ipred: Update to 0.9-11.

* gnu/packages/cran.scm (r-ipred): Update to 0.9-11.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 5df2bbf011..6c033f361a 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -4219,14 +4219,14 @@ provided.")
 (define-public r-ipred
   (package
     (name "r-ipred")
-    (version "0.9-10")
+    (version "0.9-11")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "ipred" version))
        (sha256
         (base32
-         "0p9cd2v47h71jbz8q0z6xykkaqpcp0mkpsfmd2bn961n1hfgpa63"))))
+         "04hfg27c72v0fz4091w3rgbc2vd7g6yl78y9plvsvh0vjlx8ymmp"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-class" ,r-class)
-- 
cgit v1.2.3


From d163c71e0a828674dd8e140c47467acbab5c43b4 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 15 Mar 2021 13:41:18 +0100
Subject: gnu: r-xfun: Update to 0.22.

* gnu/packages/cran.scm (r-xfun): Update to 0.22.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 6c033f361a..e120c613b1 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -5282,13 +5282,13 @@ iVAT).")
 (define-public r-xfun
   (package
     (name "r-xfun")
-    (version "0.21")
+    (version "0.22")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "xfun" version))
        (sha256
-        (base32 "18qjs81fn8q2d2drcan8gpgvrbgxgd0b659c92z19kg2h4c1g3k4"))))
+        (base32 "0ix3p0iw2c60whn5mvsflh0vhm4yixhw4s9d9v4023qhp077nw9y"))))
     (build-system r-build-system)
     ;; knitr itself depends on xfun
     #;
-- 
cgit v1.2.3


From 87d3f805b9494c7ac4cabe4f2ded0c8141a14629 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 15 Mar 2021 13:41:22 +0100
Subject: gnu: r-utf8: Update to 1.2.1.

* gnu/packages/cran.scm (r-utf8): Update to 1.2.1.
[native-inputs]: Add r-knitr.
---
 gnu/packages/cran.scm | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index e120c613b1..94218d0933 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -5304,15 +5304,17 @@ packages maintained by Yihui Xie.")
 (define-public r-utf8
   (package
     (name "r-utf8")
-    (version "1.1.4")
+    (version "1.2.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "utf8" version))
        (sha256
         (base32
-         "0m0ywg8k3blfiahxvh1i4zn9dksrlc937d2lbza5fc38zjnrrnpn"))))
+         "1yw7vjn3gpkqddc91rbfh4kk0zmn2kp0jycrd3066sissh01jhdk"))))
     (build-system r-build-system)
+    (native-inputs
+     `(("r-knitr" ,r-knitr)))
     (home-page "https://github.com/patperry/r-utf8")
     (synopsis "Unicode text processing")
     (description
-- 
cgit v1.2.3


From 77e5a20c43e90328d8576087fe9e34859370f3f0 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 15 Mar 2021 13:41:25 +0100
Subject: gnu: r-maptools: Update to 1.1-1.

* gnu/packages/cran.scm (r-maptools): Update to 1.1-1.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 94218d0933..fb6c1cc7a4 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -6911,14 +6911,14 @@ simple method for converting between file types.")
 (define-public r-maptools
   (package
     (name "r-maptools")
-    (version "1.0-2")
+    (version "1.1-1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "maptools" version))
        (sha256
         (base32
-         "0jgf3wg47jdnznxb3ncv4is9ackwviy4lzcyggqwzw3wh6jnvb6s"))))
+         "0pn4gwh2rl6pfh2vbc7ln86kzlg22cfpd02z95j7zpjidz2mva8l"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-foreign" ,r-foreign)
-- 
cgit v1.2.3


From 796a2241e302be0bff02fd10d2cf71ef33e642ca Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 15 Mar 2021 13:41:29 +0100
Subject: gnu: r-flextable: Update to 0.6.4.

* gnu/packages/cran.scm (r-flextable): Update to 0.6.4.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index fb6c1cc7a4..ce15619125 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -8330,14 +8330,14 @@ functions.")
 (define-public r-flextable
   (package
     (name "r-flextable")
-    (version "0.6.3")
+    (version "0.6.4")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "flextable" version))
        (sha256
         (base32
-         "0as80m19lvajc0vzllq9d9p63zglsm2ph7vdfg3jgk90jp8j76dg"))))
+         "1ykjfnqhn8nd9f3l4jj8hf1bbjjckkna3p7fdsg0a73c05a17yma"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-base64enc" ,r-base64enc)
-- 
cgit v1.2.3


From dfa052bbc9b4168d1797ba1ae1ff951a1a3c8bf3 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 15 Mar 2021 13:41:32 +0100
Subject: gnu: r-blockfest: Update to 2.0.

* gnu/packages/cran.scm (r-blockfest): Update to 2.0.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index ce15619125..759951bc41 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -8664,14 +8664,14 @@ procedures to speed up calculations in R.")
 (define-public r-blockfest
   (package
     (name "r-blockfest")
-    (version "1.8")
+    (version "2.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "BlockFeST" version))
        (sha256
         (base32
-         "12cbrmgqszlj729zrn9d1d7drbr0iay43knnmrzcxs6v7lfszsx5"))))
+         "1fcl3yc1cf09znqbj787d3fd2kl5rp63la7pxawsgmap7nxwkp65"))))
     (properties `((upstream-name . "BlockFeST")))
     (build-system r-build-system)
     (propagated-inputs `(("r-basix" ,r-basix)))
-- 
cgit v1.2.3


From b5aa552e6376cfc38809f9acce09e1ddf3cff032 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 15 Mar 2021 13:41:35 +0100
Subject: gnu: r-magick: Update to 2.7.0.

* gnu/packages/cran.scm (r-magick): Update to 2.7.0.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 759951bc41..837469ae02 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -9691,14 +9691,14 @@ samples is large and the number of mixture components is not too large.")
 (define-public r-magick
   (package
     (name "r-magick")
-    (version "2.6.0")
+    (version "2.7.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "magick" version))
        (sha256
         (base32
-         "1k4fqhxh2ppynl56fs044wpn4wk6gbv6lwp2x4x7j67zwcv56n36"))))
+         "0m1kij6pp7dmsrhl80h60iyccjqmbbb3zdnqdc9sgy1kj1x3pscp"))))
     (build-system r-build-system)
     (inputs
      `(("imagemagick" ,imagemagick)
-- 
cgit v1.2.3


From ecd03401c6c18f7487a4f4abb5adf07a23db14a0 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 15 Mar 2021 13:41:38 +0100
Subject: gnu: r-effectsize: Update to 0.4.4.

* gnu/packages/cran.scm (r-effectsize): Update to 0.4.4.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 837469ae02..c67769023c 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -10453,14 +10453,14 @@ results using @code{ggplot2}.")
 (define-public r-effectsize
   (package
     (name "r-effectsize")
-    (version "0.4.3")
+    (version "0.4.4")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "effectsize" version))
        (sha256
         (base32
-         "1hcrnax9wf0nwsb8nv15rxw8yy8w5dak16dw3w5bxi8xnf56lkz2"))))
+         "0mgkq12ym72ncakkjpkzkjglhksyhj3iw8v4a8fjgpf7prvn191g"))))
     (properties `((upstream-name . "effectsize")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From dae999bc48c8d0ac8853cb13550250645ce0f27b Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 15 Mar 2021 13:41:41 +0100
Subject: gnu: r-parallelly: Update to 1.24.0.

* gnu/packages/cran.scm (r-parallelly): Update to 1.24.0.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index c67769023c..4196a895cf 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -13701,14 +13701,14 @@ them in distributed compute environments.")
 (define-public r-parallelly
   (package
     (name "r-parallelly")
-    (version "1.23.0")
+    (version "1.24.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "parallelly" version))
        (sha256
         (base32
-         "025whcz55wj9jd73dalkbxh4l2331mqn758glr6hlf472lwf4v1p"))))
+         "1x04pxcyyzmg1rl9mcd7mmxglzmxgy40fmbwpy7vf5y7z15rzrp6"))))
     (properties `((upstream-name . "parallelly")))
     (build-system r-build-system)
     (home-page "https://github.com/HenrikBengtsson/parallelly")
-- 
cgit v1.2.3


From 58a2c438d3b420da1a4d84e165937283c5e143a7 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 15 Mar 2021 13:41:45 +0100
Subject: gnu: r-lavaan: Update to 0.6-8.

* gnu/packages/cran.scm (r-lavaan): Update to 0.6-8.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 4196a895cf..bf02a8fd49 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -14449,14 +14449,14 @@ probabilities from a standard bivariate normal CDF.")
 (define-public r-lavaan
   (package
     (name "r-lavaan")
-    (version "0.6-7")
+    (version "0.6-8")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "lavaan" version))
        (sha256
         (base32
-         "0ks62wrwghbm1brzmqvr92h5n1295dpc87m1g3xrfx0mkdaqdcdk"))))
+         "18l49f1v7nrngwra4v983ic8w1d4w23ws8xf36337dq0j6809qj0"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-mass" ,r-mass)
-- 
cgit v1.2.3


From 7bd5a643032e04fd662a1b2f24730c8121545681 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 15 Mar 2021 13:41:48 +0100
Subject: gnu: r-forecast: Update to 8.14.

* gnu/packages/cran.scm (r-forecast): Update to 8.14.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index bf02a8fd49..39db6a00e1 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -21892,14 +21892,14 @@ Raftery, Appl.Statistics, 1989); it includes inference and basic methods.")
 (define-public r-forecast
   (package
     (name "r-forecast")
-    (version "8.13")
+    (version "8.14")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "forecast" version))
        (sha256
         (base32
-         "0vrql5d4v28890np2m6ws1nr1fcl6frs1bz74vfkihkixcmkl3j9"))))
+         "12bfw029xb1dndcjyn2r7a51i7hnkkbdilp69k97sz2v8b7v1y3s"))))
     (properties `((upstream-name . "forecast")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From b0036b407c9a4db895f9e65e3b858e0f26f85b45 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 15 Mar 2021 13:41:51 +0100
Subject: gnu: r-brms: Update to 2.15.0.

* gnu/packages/cran.scm (r-brms): Update to 2.15.0.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 39db6a00e1..ee4528a7b3 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -24118,14 +24118,14 @@ vignette for more information and examples.")
 (define-public r-brms
   (package
     (name "r-brms")
-    (version "2.14.4")
+    (version "2.15.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "brms" version))
        (sha256
         (base32
-         "0mzwihhgmn405l6zq11a180q4k3chggj9qj0j7q838b9vrszg59j"))))
+         "0byc3fyvf9qbvvgwf55ih5d4br1nnxlbaidq9fvr11bmv38h25y1"))))
     (properties `((upstream-name . "brms")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From e4d4046999304a3693da80cf0fdfe5fd5753b2b7 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 15 Mar 2021 13:41:56 +0100
Subject: gnu: r-spatstat: Update to 2.0-1.

* gnu/packages/cran.scm (r-spatstat): Update to 2.0-1.
[propagated-inputs]: Remove r-abind, r-deldir, r-goftest, r-matrix, r-mgcv,
r-nlme, r-polyclip, r-rpart, and r-tensor; add r-spatstat-core,
r-spatstat-geom, and r-spatstat-linnet.
---
 gnu/packages/cran.scm | 18 ++++++------------
 1 file changed, 6 insertions(+), 12 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index ee4528a7b3..ffba66e80e 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -24953,28 +24953,22 @@ for spatial data on a linear network.")
 (define-public r-spatstat
   (package
     (name "r-spatstat")
-    (version "1.64-1")
+    (version "2.0-1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "spatstat" version))
        (sha256
         (base32
-         "06jmxfs9kz9qqi3ichfgn8dglwb87kq2nl578p83za5psv8cfgya"))))
+         "1xq11ijc0d0lbixxb3wnvyr4gplfj2d2i64ynsa089xd525zzzbw"))))
     (properties `((upstream-name . "spatstat")))
     (build-system r-build-system)
     (propagated-inputs
-     `(("r-abind" ,r-abind)
-       ("r-deldir" ,r-deldir)
-       ("r-goftest" ,r-goftest)
-       ("r-matrix" ,r-matrix)
-       ("r-mgcv" ,r-mgcv)
-       ("r-nlme" ,r-nlme)
-       ("r-polyclip" ,r-polyclip)
-       ("r-rpart" ,r-rpart)
+     `(("r-spatstat-core" ,r-spatstat-core)
        ("r-spatstat-data" ,r-spatstat-data)
-       ("r-spatstat-utils" ,r-spatstat-utils)
-       ("r-tensor" ,r-tensor)))
+       ("r-spatstat-geom" ,r-spatstat-geom)
+       ("r-spatstat-linnet" ,r-spatstat-linnet)
+       ("r-spatstat-utils" ,r-spatstat-utils)))
     (home-page "http://www.spatstat.org")
     (synopsis "Spatial Point Pattern analysis, model-fitting, simulation, tests")
     (description
-- 
cgit v1.2.3


From ee92bb90042cfbd99814f22913552a5ef9206240 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 15 Mar 2021 13:42:00 +0100
Subject: gnu: r-workflows: Update to 0.2.2.

* gnu/packages/cran.scm (r-workflows): Update to 0.2.2.
[propagated-inputs]: Add r-vctrs.
---
 gnu/packages/cran.scm | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index ffba66e80e..6351d0ca7a 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -25603,14 +25603,14 @@ more.")
 (define-public r-workflows
   (package
     (name "r-workflows")
-    (version "0.2.1")
+    (version "0.2.2")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "workflows" version))
        (sha256
         (base32
-         "1mk0pnmpqlhf143mvj9rwvjrrshirz6s83s5hbfalhnyw7hzkfb9"))))
+         "19ipcxx4qfz28cjkgr1vny03yhmbd3m2v64v30gk5pf73nazvmaz"))))
     (properties `((upstream-name . "workflows")))
     (build-system r-build-system)
     (propagated-inputs
@@ -25621,7 +25621,8 @@ more.")
        ("r-hardhat" ,r-hardhat)
        ("r-parsnip" ,r-parsnip)
        ("r-rlang" ,r-rlang)
-       ("r-tidyselect" ,r-tidyselect)))
+       ("r-tidyselect" ,r-tidyselect)
+       ("r-vctrs" ,r-vctrs)))
     (native-inputs
      `(("r-knitr" ,r-knitr)))
     (home-page "https://github.com/tidymodels/workflows")
-- 
cgit v1.2.3


From 921ecdba7c78d0b49bf8a26e97e978906236fc8d Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 15 Mar 2021 13:42:04 +0100
Subject: gnu: r-bbotk: Update to 0.3.1.

* gnu/packages/cran.scm (r-bbotk): Update to 0.3.1.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 6351d0ca7a..b08c41e98a 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -26963,14 +26963,14 @@ vector machines, and gradient boosting.")
 (define-public r-bbotk
   (package
     (name "r-bbotk")
-    (version "0.3.0")
+    (version "0.3.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "bbotk" version))
        (sha256
         (base32
-         "0kbjbwwq1fdfpl4xzy08hz4qvhjjchvz58icxq0dlbsmdyqwhwv0"))))
+         "1f29wxnxr73c4yp5afk05jqggpm7k1z8wiak8xsyw68h7xflq550"))))
     (properties `((upstream-name . "bbotk")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From ea23f17ece3ad97ff4d7b2d1c0b56d960d5de600 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 15 Mar 2021 13:42:07 +0100
Subject: gnu: r-mlr3tuning: Update to 0.8.0.

* gnu/packages/cran.scm (r-mlr3tuning): Update to 0.8.0.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index b08c41e98a..b000212858 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -26993,13 +26993,13 @@ annealing.")
 (define-public r-mlr3tuning
   (package
     (name "r-mlr3tuning")
-    (version "0.7.0")
+    (version "0.8.0")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "mlr3tuning" version))
               (sha256
                (base32
-                "0xpq16qij05nsfwg0qnfziqjvgk5wn0dgl0sb5gg3qsp1cs6vfqj"))))
+                "16rvsf0jf06yvalydbs7zzn2994hvvyfw975ydiyv3wy1qzgr8bv"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-bbotk" ,r-bbotk)
-- 
cgit v1.2.3


From bbc542b53c3fe592d092eefd3c7ad7acd465cfc1 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 15 Mar 2021 13:42:10 +0100
Subject: gnu: r-textshaping: Update to 0.3.2.

* gnu/packages/cran.scm (r-textshaping): Update to 0.3.2.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index b000212858..3afe67f7cf 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -27292,14 +27292,14 @@ clusterings as resolution increases.")
 (define-public r-textshaping
   (package
     (name "r-textshaping")
-    (version "0.3.1")
+    (version "0.3.2")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "textshaping" version))
        (sha256
         (base32
-         "16y3amb9cxwq126q1mxssx7kswzalqf9n2437mi5n7q1nqby6wlq"))))
+         "0fqh4z505b2qriqcj70g2hhdgiawd3w2rs9rqxdwizz5vk8jjygx"))))
     (properties `((upstream-name . "textshaping")))
     (build-system r-build-system)
     (inputs
-- 
cgit v1.2.3


From 29e992c03001ce0c6b4a5ed33d9db7d9593cc23b Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 15 Mar 2021 22:05:43 +0100
Subject: gnu: r-seurat: Fix build.

This is a follow-up to commit e4d4046999304a3693da80cf0fdfe5fd5753b2b7

* gnu/packages/cran.scm (r-seurat)[arguments]: Patch NAMESPACE file.
---
 gnu/packages/cran.scm | 12 ++++++++++++
 1 file changed, 12 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 3afe67f7cf..5617383cbc 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -26491,6 +26491,18 @@ other R users.")
                 "1mp3py00bmzj4541d8ry5sfzkpfzvnl9dpa8n4qhakd13dl30xdn"))))
     (properties `((upstream-name . "Seurat")))
     (build-system r-build-system)
+    ;; This is needed because r-spatstat has been split up and there has
+    ;; been no new release of Seurat since then.
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'fix-spatstat-import
+           (lambda _
+             (substitute* "NAMESPACE"
+               (("importFrom\\(spatstat,markvario\\)")
+                "importFrom(spatstat.core,markvario)")
+               (("importFrom\\(spatstat,ppp\\)")
+                "importFrom(spatstat.geom,ppp)")))))))
     (propagated-inputs
      `(("r-cluster" ,r-cluster)
        ("r-cowplot" ,r-cowplot)
-- 
cgit v1.2.3


From dd4670d40d59c058e140c32d92085f6d02b1cadb Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 22 Mar 2021 14:22:28 +0100
Subject: gnu: Add r-lsa.

* gnu/packages/cran.scm (r-lsa): New variable.
---
 gnu/packages/cran.scm | 26 ++++++++++++++++++++++++++
 1 file changed, 26 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 5617383cbc..b9842ca954 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -26204,6 +26204,32 @@ statistical analysis that share the underlying design philosophy, grammar, and
 data structures of the tidyverse.")
     (license license:gpl3)))
 
+(define-public r-lsa
+  (package
+    (name "r-lsa")
+    (version "0.73.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "lsa" version))
+       (sha256
+        (base32
+         "1a33irqa6qvbc02z12rgbgv8kxq2gmahy7j5bg8b23lvvaxif06b"))))
+    (properties `((upstream-name . "lsa")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-snowballc" ,r-snowballc)))
+    (home-page "https://cran.r-project.org/package=lsa")
+    (synopsis "Latent semantic analysis")
+    (description
+     "The basic idea of latent semantic analysis (LSA) is, that text do have a
+higher order (=latent semantic) structure which, however, is obscured by word
+usage (e.g. through the use of synonyms or polysemy).  By using conceptual
+indices that are derived statistically via a truncated singular value
+decomposition (a two-mode factor analysis) over a given document-term matrix,
+this variability problem can be overcome.")
+    (license license:gpl2+)))
+
 (define-public r-mlecens
   (package
     (name "r-mlecens")
-- 
cgit v1.2.3