From c6bf89cff07802f5ebc7f1b1deb2e390641ec1b6 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Thu, 27 Jan 2022 22:06:26 +0100
Subject: gnu: pigx-rnaseq: Fix Python module capture.

The build system expects all Python modules to be on PYTHONPATH.

* gnu/packages/bioinformatics.scm (pigx-rnaseq)[arguments]: Set PYTHONPATH
variable in new build phase.
---
 gnu/packages/bioinformatics.scm | 3 +++
 1 file changed, 3 insertions(+)

(limited to 'gnu/packages/bioinformatics.scm')

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index c872c9c45a..e501c84265 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10895,6 +10895,9 @@ once.  This package provides tools to perform Drop-seq analyses.")
          (add-before 'bootstrap 'autoreconf
            (lambda _
              (invoke "autoreconf" "-vif")))
+         (add-before 'configure 'set-PYTHONPATH
+           (lambda _
+             (setenv "PYTHONPATH" (getenv "GUIX_PYTHONPATH"))))
          (add-before 'check 'set-timezone
            ;; The readr package is picky about timezones.
            (lambda* (#:key inputs #:allow-other-keys)
-- 
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