From fba62f8e926dc91e52b24376dc938f3ed6f17006 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 14 Apr 2020 14:07:57 +0200 Subject: gnu: pigx-chipseq: Update to 0.0.42. * gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.42. --- gnu/packages/bioinformatics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/bioinformatics.scm') diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 695e69e2b1..f79a6e0cf4 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -12768,7 +12768,7 @@ expression report comparing samples in an easily configurable manner.") (define-public pigx-chipseq (package (name "pigx-chipseq") - (version "0.0.41") + (version "0.0.42") (source (origin (method url-fetch) (uri (string-append "https://github.com/BIMSBbioinfo/pigx_chipseq/" @@ -12776,7 +12776,7 @@ expression report comparing samples in an easily configurable manner.") "/pigx_chipseq-" version ".tar.gz")) (sha256 (base32 - "0akbxdmsjsq5fzbwaap04hqjpsfgv1l6yrc2pwgbya1xgqvcq6vy")))) + "0xbvgqpk32a8iczhvac56cacr46rdkqb0allhhpvmj940idf72bi")))) (build-system gnu-build-system) ;; parts of the tests rely on access to the network (arguments '(#:tests? #f)) -- cgit v1.2.3 From 679609e179757a702f0384cf920b751b4940fc15 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 14 Apr 2020 16:12:39 +0200 Subject: gnu: r-s4vectors: Update to 0.24.4. * gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.24.4. --- gnu/packages/bioinformatics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/bioinformatics.scm') diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index f79a6e0cf4..2b46eb4ac9 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7502,13 +7502,13 @@ checks on R packages that are to be submitted to the Bioconductor repository.") (define-public r-s4vectors (package (name "r-s4vectors") - (version "0.24.3") + (version "0.24.4") (source (origin (method url-fetch) (uri (bioconductor-uri "S4Vectors" version)) (sha256 (base32 - "01f7dms4kw9ajwqlvh5s47riv748xrrs41na03byhjvn4fbdc44y")))) + "1fzs8j2d3wwfzm2fq63ywf68a4dbggyl5l098f148yn4jw7jd3bc")))) (properties `((upstream-name . "S4Vectors"))) (build-system r-build-system) -- cgit v1.2.3 From 1971d11db9ed9683d5036cd4c62deb564842e1f6 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 14 Apr 2020 16:14:02 +0200 Subject: gnu: r-delayedarray: Update to 0.12.3. * gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.12.3. [native-inputs]: Add r-knitr. --- gnu/packages/bioinformatics.scm | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) (limited to 'gnu/packages/bioinformatics.scm') diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 2b46eb4ac9..4741c8bc50 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7944,13 +7944,13 @@ tab-delimited (tabix) files.") (define-public r-delayedarray (package (name "r-delayedarray") - (version "0.12.2") + (version "0.12.3") (source (origin (method url-fetch) (uri (bioconductor-uri "DelayedArray" version)) (sha256 (base32 - "09lackgix5jpm16k0mz2zkibflfb4wzidbz4q32mlxmklf40037q")))) + "02i88ll2d7r83nk0wdj28akvsz3jq19g6ixpaahfy3jy5av4byv6")))) (properties `((upstream-name . "DelayedArray"))) (build-system r-build-system) @@ -7961,6 +7961,8 @@ tab-delimited (tabix) files.") ("r-iranges" ,r-iranges) ("r-matrix" ,r-matrix) ("r-matrixstats" ,r-matrixstats))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://bioconductor.org/packages/DelayedArray") (synopsis "Delayed operations on array-like objects") (description -- cgit v1.2.3