From b540e5e6bba6e0047864abcc3a6dfec46ff6cd32 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Wed, 1 Jun 2022 12:57:22 +0200
Subject: gnu: pigx-scrnaseq: Update to 1.1.9.

* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 1.1.9.
[arguments]: Remove 'autoreconf phase.
[native-inputs]: Remove autoconf and automake.
---
 gnu/packages/bioinformatics.scm | 18 ++----------------
 1 file changed, 2 insertions(+), 16 deletions(-)

(limited to 'gnu/packages/bioinformatics.scm')

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 92d92e7d02..931eea7022 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10679,7 +10679,7 @@ methylation and segmentation.")
 (define-public pigx-scrnaseq
   (package
     (name "pigx-scrnaseq")
-    (version "1.1.8")
+    (version "1.1.9")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://github.com/BIMSBbioinfo/pigx_scrnaseq/"
@@ -10687,23 +10687,11 @@ methylation and segmentation.")
                                   "/pigx_scrnaseq-" version ".tar.gz"))
               (sha256
                (base32
-                "1lc42hl8mz95kilh0z39s3wnv092mhm6vl2i394n0yfvdzk4f885"))))
+                "0adx7877c3lhlrzfid76i8bc829wcmzvrm0jx47gyid8mxqb7vqs"))))
     (build-system gnu-build-system)
     (arguments
      `(#:phases
        (modify-phases %standard-phases
-         (add-before 'bootstrap 'autoreconf
-           (lambda _
-             ;; This was fixed in commit
-             ;; c4ac067438ae9312b5786a72e2bfb3d795e3ec8a, but there is no
-             ;; release with this fix.
-             (call-with-output-file "VERSION"
-               (lambda (port) (display ,version port)))
-             ;; https://github.com/BIMSBbioinfo/pigx_scrnaseq/issues/59
-             (substitute* "m4/ax_r_package.m4"
-               (("if\\(is.na\\(packageDescription\\(\"PKG\"\\)\\)\\)")
-                "if(system.file(package=\"PKG\") == \"\")"))
-             (invoke "autoreconf" "-vif")))
          (add-before 'configure 'set-additional-environment-variables
            (lambda _
              ;; Needed because of loompy
@@ -10752,8 +10740,6 @@ methylation and segmentation.")
            r-singlecellexperiment
            r-stringr
            r-yaml))
-    (native-inputs
-     (list autoconf automake))
     (home-page "https://bioinformatics.mdc-berlin.de/pigx/")
     (synopsis "Analysis pipeline for single-cell RNA sequencing experiments")
     (description
-- 
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