From b38dd34f40ff9a779f9e8faf2c8d3739b6d6270f Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 26 Feb 2020 13:14:57 +0100 Subject: gnu: crossmap: Update to 0.3.8. * gnu/packages/bioinformatics.scm (crossmap): Update to 0.3.8. [arguments]: Remove to build with default Python. [inputs]: Add python-pybigwig; replace python2-bx-python, python2-numpy, and python2-pysam with their Python 3 variants. [native-inputs]: Replace python2-cython and python2-nose with their Python 3 variants. --- gnu/packages/bioinformatics.scm | 16 ++++++++-------- 1 file changed, 8 insertions(+), 8 deletions(-) (limited to 'gnu/packages/bioinformatics.scm') diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 7f2a852fb0..1f17c019f0 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -2272,23 +2272,23 @@ time.") (define-public crossmap (package (name "crossmap") - (version "0.2.9") + (version "0.3.8") (source (origin (method url-fetch) (uri (pypi-uri "CrossMap" version)) (sha256 (base32 - "1byhclrqnqpvc1rqkfh4jwj6yhn0x9y7jk47i0qcjlhk0pjkw92p")))) + "1sb2f2qbxya4fzw3yjl09vbrs8vfmw22zrygrvz004sf9gb1vkan")))) (build-system python-build-system) - (arguments `(#:python ,python-2)) (inputs - `(("python-bx-python" ,python2-bx-python) - ("python-numpy" ,python2-numpy) - ("python-pysam" ,python2-pysam) + `(("python-bx-python" ,python-bx-python) + ("python-numpy" ,python-numpy) + ("python-pybigwig" ,python-pybigwig) + ("python-pysam" ,python-pysam) ("zlib" ,zlib))) (native-inputs - `(("python-cython" ,python2-cython) - ("python-nose" ,python2-nose))) + `(("python-cython" ,python-cython) + ("python-nose" ,python-nose))) (home-page "http://crossmap.sourceforge.net/") (synopsis "Convert genome coordinates between assemblies") (description -- cgit v1.2.3