From 80eb01c7763e99603dac6c1e4ad41f521fed5c26 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 25 Mar 2019 14:34:41 +0100 Subject: gnu: r-gkmsvm: Move to (gnu packages bioconductor). * gnu/packages/bioinformatics.scm (r-gkmsvm): Move from here... * gnu/packages/bioconductor.scm (r-gkmsvm): ...to here. --- gnu/packages/bioinformatics.scm | 33 --------------------------------- 1 file changed, 33 deletions(-) (limited to 'gnu/packages/bioinformatics.scm') diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 1a942b6476..42c90ea949 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8533,39 +8533,6 @@ bound and non bound genomic regions to accurately identify transcription factors bound at the specific regions.") (license license:gpl2+))) -(define-public r-gkmsvm - (package - (name "r-gkmsvm") - (version "0.79.0") - (source - (origin - (method url-fetch) - (uri (cran-uri "gkmSVM" version)) - (sha256 - (base32 - "04dakbgfvfalz4rm4fvvybp506dn5fbj5g86ybfhrc6wywjllsz3")))) - (properties `((upstream-name . "gkmSVM"))) - (build-system r-build-system) - (propagated-inputs - `(("r-biocgenerics" ,r-biocgenerics) - ("r-biostrings" ,r-biostrings) - ("r-genomeinfodb" ,r-genomeinfodb) - ("r-genomicranges" ,r-genomicranges) - ("r-iranges" ,r-iranges) - ("r-kernlab" ,r-kernlab) - ("r-rcpp" ,r-rcpp) - ("r-rocr" ,r-rocr) - ("r-rtracklayer" ,r-rtracklayer) - ("r-s4vectors" ,r-s4vectors) - ("r-seqinr" ,r-seqinr))) - (home-page "https://cran.r-project.org/web/packages/gkmSVM") - (synopsis "Gapped-kmer support vector machine") - (description - "This R package provides tools for training gapped-kmer SVM classifiers -for DNA and protein sequences. This package supports several sequence -kernels, including: gkmSVM, kmer-SVM, mismatch kernel and wildcard kernel.") - (license license:gpl2+))) - (define-public r-tximport (package (name "r-tximport") -- cgit v1.2.3